1WYRA

Solution structure of the ch domain of human rho guanine nucleotide exchange factor 6
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
121
structure length
121
Chain Sequence
GSSGSSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVEIFDPDDLYSGVNFSKVLSTLLAVNKATESGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (31-41)TVIII1 (28-31)AH3 (43-52)TIV1 (53-56)TVIII2 (55-58)AH4 (67-84)TVIII3 (61-64)AH5 (91-96)EMPTYAH6 (100-114)TVIII4 (97-100)AH1 (8-18)Updating...
connected with : NaN
molecule tags Structural protein
source organism Homo sapiens
publication title Solution structure of the CH domain of human Rho guanine nucleotide exchange factor 6
rcsb
molecule keywords Rho guanine nucleotide exchange factor 6
total genus 24
structure length 121
sequence length 121
ec nomenclature
pdb deposition date 2005-02-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1wyrA00
4EDMA 1RT8A 1BKRA 1AOAA 2DK9A 3HOPA 1DXXA 5L0OA 3KMWB 1WYRA 3I6XA 1UEGA 1VKAA 4TXIA 2RR8A 1MB8A 1AA2A 2EYIA 3KMUB 5A37A 3JARM 1WKUA 2EYNA 1TJTA 2VZIB 4B7LA 2D88A 2D89A 5BVRA 2VZGB 2E9KA 3HORA 1BHDA 5A36A 4TXKA 4EDNA 3JAKM 2VZDA 2WFNA 2QJXA 3JALM 4Q57B 4Q58A 3FERA 1P5SA 5A4BA 1UJOA 2WA6A 3REPB 3HOCA 3KY9A 2YRNA 1QAGA 2L3GA 2JV9A 2K3SA 1WYLA 1P2XA 2QJZA 4EDLA 2VZCA 1WYPA 3CO1A 2D87A 2R8UA 3F7PA 1WYNA 1PXYA 2R0OA 1WYMA 1H67A 2D85A 1WYOA 1V5KA 1WYQA 1SH5A 4Q59A 1PA7A 2D86A 2K2RA 1WIXA 5A38A 2EE7A 2WA7A 5J8EA 1WJOA 1SH6A 2WA5A
chains in the Genus database with same CATH superfamily
4EDMA 1RT8A 1BKRA 1AOAA 2DK9A 3HOPA 1DXXA 5L0OA 3KMWB 1WYRA 2HKPA 2VE7C 2WDTA 4DDPA 3I6XA 1UEGA 1VKAA 4TXIA 2RR8A 1MB8A 1AA2A 2EYIA 3KMUB 5A37A 3JARM 1WKUA 2IGPA 2EYNA 3VP7A 1TJTA 2VZIB 4B7LA 2D88A 2D89A 5BVRA 2VZGB 2E9KA 3HORA 1BHDA 5A36A 4TXKA 4EDNA 2HL9A 3JAKM 2VZDA 2WFNA 2QJXA 3JALM 4Q57B 4Q58A 2WE6A 3FERA 4LVPA 1P5SA 5A4BA 1UJOA 2WA6A 3REPB 5FMTA 3HOCA 3KY9A 2YRNA 1QAGA 2L3GA 2JV9A 2K3SA 1WYLA 2EQOA 1P2XA 2QJZA 4LVRA 4EDLA 2VZCA 1WYPA 1EUVA 3CO1A 2D87A 2R8UA 3F7PA 1WYNA 1PXYA 2R0OA 1WYMA 1H67A 2D85A 2HL8A 1WYOA 2VE7A 1V5KA 1WYQA 1SH5A 4Q59A 1PA7A 2D86A 2K2RA 1WIXA 5A38A 5FMUA 2EE7A 3EAYA 2WA7A 5J8EA 1WJOA 1SH6A 2WA5A
chains in the Genus database with same CATH topology
4EDMA 1RT8A 1BKRA 1AOAA 2DK9A 3HOPA 1DXXA 5L0OA 3KMWB 1WYRA 3I6XA 1UEGA 1VKAA 4TXIA 2RR8A 1MB8A 1AA2A 2EYIA 3KMUB 5A37A 3JARM 1WKUA 2EYNA 1TJTA 2VZIB 4B7LA 2D88A 2D89A 5BVRA 2VZGB 2E9KA 3HORA 1BHDA 5A36A 4TXKA 4EDNA 3JAKM 2VZDA 2WFNA 2QJXA 3JALM 4Q57B 4Q58A 3FERA 1P5SA 5A4BA 1UJOA 2WA6A 3REPB 3HOCA 3KY9A 2YRNA 1QAGA 2L3GA 2JV9A 2K3SA 1WYLA 1P2XA 2QJZA 4EDLA 2VZCA 1WYPA 3CO1A 2D87A 2R8UA 3F7PA 1WYNA 1PXYA 2R0OA 1WYMA 1H67A 2D85A 1WYOA 1V5KA 1WYQA 1SH5A 4Q59A 1PA7A 2D86A 2K2RA 1WIXA 5A38A 2EE7A 2WA7A 5J8EA 1WJOA 1SH6A 2WA5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EDM A;  1RT8 A;  1BKR A;  1AOA A;  2DK9 A;  3HOP A;  1DXX A;  5L0O A;  3KMW B;  1WYR A;  3I6X A;  1UEG A;  1VKA A;  4TXI A;  2RR8 A;  1MB8 A;  1AA2 A;  2EYI A;  3KMU B;  5A37 A;  3JAR M;  1WKU A;  2EYN A;  1TJT A;  2VZI B;  4B7L A;  2D88 A;  2D89 A;  5BVR A;  2VZG B;  2E9K A;  3HOR A;  1BHD A;  5A36 A;  4TXK A;  4EDN A;  3JAK M;  2VZD A;  2WFN A;  2QJX A;  3JAL M;  4Q57 B;  4Q58 A;  3FER A;  1P5S A;  5A4B A;  1UJO A;  2WA6 A;  3REP B;  3HOC A;  3KY9 A;  2YRN A;  1QAG A;  2L3G A;  2JV9 A;  2K3S A;  1WYL A;  1P2X A;  2QJZ A;  4EDL A;  2VZC A;  1WYP A;  3CO1 A;  2D87 A;  2R8U A;  3F7P A;  1WYN A;  1PXY A;  2R0O A;  1WYM A;  1H67 A;  2D85 A;  1WYO A;  1V5K A;  1WYQ A;  1SH5 A;  4Q59 A;  1PA7 A;  2D86 A;  2K2R A;  1WIX A;  5A38 A;  2EE7 A;  2WA7 A;  5J8E A;  1WJO A;  1SH6 A;  2WA5 A; 
#chains in the Genus database with same CATH topology
 4EDM A;  1RT8 A;  1BKR A;  1AOA A;  2DK9 A;  3HOP A;  1DXX A;  5L0O A;  3KMW B;  1WYR A;  2HKP A;  2VE7 C;  2WDT A;  4DDP A;  3I6X A;  1UEG A;  1VKA A;  4TXI A;  2RR8 A;  1MB8 A;  1AA2 A;  2EYI A;  3KMU B;  5A37 A;  3JAR M;  1WKU A;  2IGP A;  2EYN A;  3VP7 A;  1TJT A;  2VZI B;  4B7L A;  2D88 A;  2D89 A;  5BVR A;  2VZG B;  2E9K A;  3HOR A;  1BHD A;  5A36 A;  4TXK A;  4EDN A;  2HL9 A;  3JAK M;  2VZD A;  2WFN A;  2QJX A;  3JAL M;  4Q57 B;  4Q58 A;  2WE6 A;  3FER A;  4LVP A;  1P5S A;  5A4B A;  1UJO A;  2WA6 A;  3REP B;  5FMT A;  3HOC A;  3KY9 A;  2YRN A;  1QAG A;  2L3G A;  2JV9 A;  2K3S A;  1WYL A;  2EQO A;  1P2X A;  2QJZ A;  4LVR A;  4EDL A;  2VZC A;  1WYP A;  1EUV A;  3CO1 A;  2D87 A;  2R8U A;  3F7P A;  1WYN A;  1PXY A;  2R0O A;  1WYM A;  1H67 A;  2D85 A;  2HL8 A;  1WYO A;  2VE7 A;  1V5K A;  1WYQ A;  1SH5 A;  4Q59 A;  1PA7 A;  2D86 A;  2K2R A;  1WIX A;  5A38 A;  5FMU A;  2EE7 A;  3EAY A;  2WA7 A;  5J8E A;  1WJO A;  1SH6 A;  2WA5 A; 
#chains in the Genus database with same CATH homology
 4EDM A;  1RT8 A;  1BKR A;  1AOA A;  2DK9 A;  3HOP A;  1DXX A;  5L0O A;  3KMW B;  1WYR A;  3I6X A;  1UEG A;  1VKA A;  4TXI A;  2RR8 A;  1MB8 A;  1AA2 A;  2EYI A;  3KMU B;  5A37 A;  3JAR M;  1WKU A;  2EYN A;  1TJT A;  2VZI B;  4B7L A;  2D88 A;  2D89 A;  5BVR A;  2VZG B;  2E9K A;  3HOR A;  1BHD A;  5A36 A;  4TXK A;  4EDN A;  3JAK M;  2VZD A;  2WFN A;  2QJX A;  3JAL M;  4Q57 B;  4Q58 A;  3FER A;  1P5S A;  5A4B A;  1UJO A;  2WA6 A;  3REP B;  3HOC A;  3KY9 A;  2YRN A;  1QAG A;  2L3G A;  2JV9 A;  2K3S A;  1WYL A;  1P2X A;  2QJZ A;  4EDL A;  2VZC A;  1WYP A;  3CO1 A;  2D87 A;  2R8U A;  3F7P A;  1WYN A;  1PXY A;  2R0O A;  1WYM A;  1H67 A;  2D85 A;  1WYO A;  1V5K A;  1WYQ A;  1SH5 A;  4Q59 A;  1PA7 A;  2D86 A;  2K2R A;  1WIX A;  5A38 A;  2EE7 A;  2WA7 A;  5J8E A;  1WJO A;  1SH6 A;  2WA5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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