2D88A

Solution structure of the ch domain from human mical-3 protein
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
121
structure length
121
Chain Sequence
GSSGSSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the CH domain from human MICAL-3 protein
rcsb
molecule tags Signaling protein, protein binding
source organism Homo sapiens
molecule keywords Protein MICAL-3
total genus 21
structure length 121
sequence length 121
ec nomenclature ec 1.14.13.225: F-actin monooxygenase.
pdb deposition date 2005-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2d88A01
5BVRA 4EDLA 2VZDA 2JV9A 2R0OA 1WKUA 5A4BA 4Q59A 5L0OA 1WYNA 1P2XA 1WIXA 2QJZA 5J8EA 3FERA 2VZIB 1WYLA 2WA5A 4Q58A 2WA6A 1BHDA 3F7PA 2EYNA 2VZCA 2D86A 3JARM 1WYMA 2QJXA 3REPB 4EDMA 3HOPA 1P5SA 1SH5A 4Q57B 3KY9A 2R8UA 3KMWB 1WYRA 2D88A 4EDNA 3KMUB 1WYOA 1WYQA 4B7LA 2WA7A 2EE7A 1DXXA 3JAKM 3CO1A 2L3GA 1RT8A 1PXYA 1WYPA 1TJTA 2EYIA 1V5KA 1AOAA 5A38A 1QAGA 2WFNA 3I6XA 5A37A 2D85A 2D89A 3HORA 1VKAA 1UEGA 4TXKA 4TXIA 5A36A 2VZGB 2DK9A 2RR8A 2D87A 3JALM 1PA7A 1SH6A 1AA2A 1MB8A 2K3SA 1WJOA 2E9KA 2YRNA 1H67A 3HOCA 1BKRA 1UJOA 2K2RA
chains in the Genus database with same CATH superfamily
5BVRA 4EDLA 2VZDA 2JV9A 2R0OA 1WKUA 5A4BA 4Q59A 5L0OA 1WYNA 4DDPA 1P2XA 1WIXA 2QJZA 5FMTA 5J8EA 2HL9A 2WDTA 3FERA 2VZIB 1WYLA 2WA5A 4Q58A 2WA6A 1BHDA 3F7PA 2EYNA 2VZCA 4LVRA 2D86A 3JARM 1WYMA 2QJXA 3REPB 4EDMA 3HOPA 1P5SA 1SH5A 4Q57B 3KY9A 2R8UA 3KMWB 1WYRA 2D88A 4EDNA 3KMUB 1WYOA 1WYQA 4B7LA 2WA7A 2EE7A 1DXXA 3JAKM 3CO1A 2EQOA 2L3GA 1RT8A 1PXYA 1WYPA 1TJTA 3EAYA 2EYIA 1V5KA 1AOAA 5A38A 1QAGA 2WFNA 4LVPA 2VE7C 2IGPA 3I6XA 5A37A 2HKPA 2HL8A 2D85A 2D89A 3HORA 1VKAA 1UEGA 4TXKA 2WE6A 4TXIA 5A36A 2VZGB 2DK9A 2RR8A 2D87A 3VP7A 5FMUA 3JALM 1PA7A 1SH6A 1AA2A 1MB8A 2K3SA 1WJOA 2E9KA 2YRNA 1H67A 3HOCA 1BKRA 2VE7A 1UJOA 2K2RA 1EUVA
chains in the Genus database with same CATH topology
5BVRA 4EDLA 2VZDA 2JV9A 2R0OA 1WKUA 5A4BA 4Q59A 5L0OA 1WYNA 1P2XA 1WIXA 2QJZA 5J8EA 3FERA 2VZIB 1WYLA 2WA5A 4Q58A 2WA6A 1BHDA 3F7PA 2EYNA 2VZCA 2D86A 3JARM 1WYMA 2QJXA 3REPB 4EDMA 3HOPA 1P5SA 1SH5A 4Q57B 3KY9A 2R8UA 3KMWB 1WYRA 2D88A 4EDNA 3KMUB 1WYOA 1WYQA 4B7LA 2WA7A 2EE7A 1DXXA 3JAKM 3CO1A 2L3GA 1RT8A 1PXYA 1WYPA 1TJTA 2EYIA 1V5KA 1AOAA 5A38A 1QAGA 2WFNA 3I6XA 5A37A 2D85A 2D89A 3HORA 1VKAA 1UEGA 4TXKA 4TXIA 5A36A 2VZGB 2DK9A 2RR8A 2D87A 3JALM 1PA7A 1SH6A 1AA2A 1MB8A 2K3SA 1WJOA 2E9KA 2YRNA 1H67A 3HOCA 1BKRA 1UJOA 2K2RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BVR A;  4EDL A;  2VZD A;  2JV9 A;  2R0O A;  1WKU A;  5A4B A;  4Q59 A;  5L0O A;  1WYN A;  1P2X A;  1WIX A;  2QJZ A;  5J8E A;  3FER A;  2VZI B;  1WYL A;  2WA5 A;  4Q58 A;  2WA6 A;  1BHD A;  3F7P A;  2EYN A;  2VZC A;  2D86 A;  3JAR M;  1WYM A;  2QJX A;  3REP B;  4EDM A;  3HOP A;  1P5S A;  1SH5 A;  4Q57 B;  3KY9 A;  2R8U A;  3KMW B;  1WYR A;  2D88 A;  4EDN A;  3KMU B;  1WYO A;  1WYQ A;  4B7L A;  2WA7 A;  2EE7 A;  1DXX A;  3JAK M;  3CO1 A;  2L3G A;  1RT8 A;  1PXY A;  1WYP A;  1TJT A;  2EYI A;  1V5K A;  1AOA A;  5A38 A;  1QAG A;  2WFN A;  3I6X A;  5A37 A;  2D85 A;  2D89 A;  3HOR A;  1VKA A;  1UEG A;  4TXK A;  4TXI A;  5A36 A;  2VZG B;  2DK9 A;  2RR8 A;  2D87 A;  3JAL M;  1PA7 A;  1SH6 A;  1AA2 A;  1MB8 A;  2K3S A;  1WJO A;  2E9K A;  2YRN A;  1H67 A;  3HOC A;  1BKR A;  1UJO A;  2K2R A; 
#chains in the Genus database with same CATH topology
 5BVR A;  4EDL A;  2VZD A;  2JV9 A;  2R0O A;  1WKU A;  5A4B A;  4Q59 A;  5L0O A;  1WYN A;  4DDP A;  1P2X A;  1WIX A;  2QJZ A;  5FMT A;  5J8E A;  2HL9 A;  2WDT A;  3FER A;  2VZI B;  1WYL A;  2WA5 A;  4Q58 A;  2WA6 A;  1BHD A;  3F7P A;  2EYN A;  2VZC A;  4LVR A;  2D86 A;  3JAR M;  1WYM A;  2QJX A;  3REP B;  4EDM A;  3HOP A;  1P5S A;  1SH5 A;  4Q57 B;  3KY9 A;  2R8U A;  3KMW B;  1WYR A;  2D88 A;  4EDN A;  3KMU B;  1WYO A;  1WYQ A;  4B7L A;  2WA7 A;  2EE7 A;  1DXX A;  3JAK M;  3CO1 A;  2EQO A;  2L3G A;  1RT8 A;  1PXY A;  1WYP A;  1TJT A;  3EAY A;  2EYI A;  1V5K A;  1AOA A;  5A38 A;  1QAG A;  2WFN A;  4LVP A;  2VE7 C;  2IGP A;  3I6X A;  5A37 A;  2HKP A;  2HL8 A;  2D85 A;  2D89 A;  3HOR A;  1VKA A;  1UEG A;  4TXK A;  2WE6 A;  4TXI A;  5A36 A;  2VZG B;  2DK9 A;  2RR8 A;  2D87 A;  3VP7 A;  5FMU A;  3JAL M;  1PA7 A;  1SH6 A;  1AA2 A;  1MB8 A;  2K3S A;  1WJO A;  2E9K A;  2YRN A;  1H67 A;  3HOC A;  1BKR A;  2VE7 A;  1UJO A;  2K2R A;  1EUV A; 
#chains in the Genus database with same CATH homology
 5BVR A;  4EDL A;  2VZD A;  2JV9 A;  2R0O A;  1WKU A;  5A4B A;  4Q59 A;  5L0O A;  1WYN A;  1P2X A;  1WIX A;  2QJZ A;  5J8E A;  3FER A;  2VZI B;  1WYL A;  2WA5 A;  4Q58 A;  2WA6 A;  1BHD A;  3F7P A;  2EYN A;  2VZC A;  2D86 A;  3JAR M;  1WYM A;  2QJX A;  3REP B;  4EDM A;  3HOP A;  1P5S A;  1SH5 A;  4Q57 B;  3KY9 A;  2R8U A;  3KMW B;  1WYR A;  2D88 A;  4EDN A;  3KMU B;  1WYO A;  1WYQ A;  4B7L A;  2WA7 A;  2EE7 A;  1DXX A;  3JAK M;  3CO1 A;  2L3G A;  1RT8 A;  1PXY A;  1WYP A;  1TJT A;  2EYI A;  1V5K A;  1AOA A;  5A38 A;  1QAG A;  2WFN A;  3I6X A;  5A37 A;  2D85 A;  2D89 A;  3HOR A;  1VKA A;  1UEG A;  4TXK A;  4TXI A;  5A36 A;  2VZG B;  2DK9 A;  2RR8 A;  2D87 A;  3JAL M;  1PA7 A;  1SH6 A;  1AA2 A;  1MB8 A;  2K3S A;  1WJO A;  2E9K A;  2YRN A;  1H67 A;  3HOC A;  1BKR A;  1UJO A;  2K2R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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