2D88A

Solution structure of the ch domain from human mical-3 protein
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
121
structure length
121
Chain Sequence
GSSGSSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the CH domain from human MICAL-3 protein
rcsb
molecule tags Signaling protein, protein binding
source organism Homo sapiens
molecule keywords Protein MICAL-3
total genus 21
structure length 121
sequence length 121
ec nomenclature ec 1.14.13.225: F-actin monooxygenase.
pdb deposition date 2005-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2d88A01
4EDNA 1AA2A 4Q59A 1WIXA 1QAGA 2D88A 2RR8A 2R0OA 4B7LA 5A4BA 5A36A 2VZCA 5L0OA 1RT8A 3HOCA 1PA7A 1WJOA 5J8EA 2K3SA 2WA5A 1WKUA 2K2RA 1SH5A 1VKAA 4Q57B 3JALM 1WYPA 1H67A 3I6XA 3F7PA 1P2XA 3REPB 2D85A 3HORA 4TXIA 1PXYA 2DK9A 1WYRA 1DXXA 2D89A 3KMUB 2WFNA 3KMWB 2VZIB 3KY9A 2D86A 3HOPA 5A37A 1WYNA 1BKRA 1AOAA 3JAKM 2VZGB 2D87A 2YRNA 4EDMA 1P5SA 2QJZA 2R8UA 4EDLA 3CO1A 3JARM 1MB8A 2EE7A 2QJXA 2JV9A 2EYNA 3FERA 1BHDA 1SH6A 1WYMA 2E9KA 4TXKA 1WYQA 1TJTA 2EYIA 5BVRA 1UJOA 2WA7A 5A38A 4Q58A 1WYOA 2VZDA 1UEGA 1WYLA 2L3GA 2WA6A 1V5KA
chains in the Genus database with same CATH superfamily
4EDNA 1AA2A 4Q59A 2WE6A 1WIXA 1QAGA 2D88A 2RR8A 2R0OA 4B7LA 5A4BA 5A36A 2VZCA 5L0OA 2IGPA 1RT8A 3HOCA 2HKPA 1PA7A 1WJOA 5J8EA 2K3SA 2WA5A 1WKUA 2K2RA 1SH5A 1VKAA 2WDTA 4Q57B 3JALM 1WYPA 1H67A 3I6XA 3F7PA 1P2XA 3REPB 2D85A 3HORA 2VE7A 4TXIA 1PXYA 2DK9A 1WYRA 1DXXA 2HL8A 2D89A 3KMUB 5FMTA 2WFNA 3KMWB 2VZIB 3KY9A 3VP7A 2D86A 3HOPA 5A37A 1WYNA 1BKRA 1AOAA 3JAKM 2VZGB 2D87A 2YRNA 4EDMA 1P5SA 2QJZA 2HL9A 2R8UA 2VE7C 4EDLA 3CO1A 3JARM 1MB8A 2EE7A 2QJXA 2JV9A 2EYNA 3FERA 1BHDA 1SH6A 1WYMA 1EUVA 2E9KA 3EAYA 4TXKA 1WYQA 1TJTA 5FMUA 2EYIA 4DDPA 5BVRA 1UJOA 2WA7A 5A38A 4Q58A 1WYOA 4LVRA 2VZDA 1UEGA 1WYLA 2L3GA 2WA6A 4LVPA 2EQOA 1V5KA
chains in the Genus database with same CATH topology
4EDNA 1AA2A 4Q59A 1WIXA 1QAGA 2D88A 2RR8A 2R0OA 4B7LA 5A4BA 5A36A 2VZCA 5L0OA 1RT8A 3HOCA 1PA7A 1WJOA 5J8EA 2K3SA 2WA5A 1WKUA 2K2RA 1SH5A 1VKAA 4Q57B 3JALM 1WYPA 1H67A 3I6XA 3F7PA 1P2XA 3REPB 2D85A 3HORA 4TXIA 1PXYA 2DK9A 1WYRA 1DXXA 2D89A 3KMUB 2WFNA 3KMWB 2VZIB 3KY9A 2D86A 3HOPA 5A37A 1WYNA 1BKRA 1AOAA 3JAKM 2VZGB 2D87A 2YRNA 4EDMA 1P5SA 2QJZA 2R8UA 4EDLA 3CO1A 3JARM 1MB8A 2EE7A 2QJXA 2JV9A 2EYNA 3FERA 1BHDA 1SH6A 1WYMA 2E9KA 4TXKA 1WYQA 1TJTA 2EYIA 5BVRA 1UJOA 2WA7A 5A38A 4Q58A 1WYOA 2VZDA 1UEGA 1WYLA 2L3GA 2WA6A 1V5KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EDN A;  1AA2 A;  4Q59 A;  1WIX A;  1QAG A;  2D88 A;  2RR8 A;  2R0O A;  4B7L A;  5A4B A;  5A36 A;  2VZC A;  5L0O A;  1RT8 A;  3HOC A;  1PA7 A;  1WJO A;  5J8E A;  2K3S A;  2WA5 A;  1WKU A;  2K2R A;  1SH5 A;  1VKA A;  4Q57 B;  3JAL M;  1WYP A;  1H67 A;  3I6X A;  3F7P A;  1P2X A;  3REP B;  2D85 A;  3HOR A;  4TXI A;  1PXY A;  2DK9 A;  1WYR A;  1DXX A;  2D89 A;  3KMU B;  2WFN A;  3KMW B;  2VZI B;  3KY9 A;  2D86 A;  3HOP A;  5A37 A;  1WYN A;  1BKR A;  1AOA A;  3JAK M;  2VZG B;  2D87 A;  2YRN A;  4EDM A;  1P5S A;  2QJZ A;  2R8U A;  4EDL A;  3CO1 A;  3JAR M;  1MB8 A;  2EE7 A;  2QJX A;  2JV9 A;  2EYN A;  3FER A;  1BHD A;  1SH6 A;  1WYM A;  2E9K A;  4TXK A;  1WYQ A;  1TJT A;  2EYI A;  5BVR A;  1UJO A;  2WA7 A;  5A38 A;  4Q58 A;  1WYO A;  2VZD A;  1UEG A;  1WYL A;  2L3G A;  2WA6 A;  1V5K A; 
#chains in the Genus database with same CATH topology
 4EDN A;  1AA2 A;  4Q59 A;  2WE6 A;  1WIX A;  1QAG A;  2D88 A;  2RR8 A;  2R0O A;  4B7L A;  5A4B A;  5A36 A;  2VZC A;  5L0O A;  2IGP A;  1RT8 A;  3HOC A;  2HKP A;  1PA7 A;  1WJO A;  5J8E A;  2K3S A;  2WA5 A;  1WKU A;  2K2R A;  1SH5 A;  1VKA A;  2WDT A;  4Q57 B;  3JAL M;  1WYP A;  1H67 A;  3I6X A;  3F7P A;  1P2X A;  3REP B;  2D85 A;  3HOR A;  2VE7 A;  4TXI A;  1PXY A;  2DK9 A;  1WYR A;  1DXX A;  2HL8 A;  2D89 A;  3KMU B;  5FMT A;  2WFN A;  3KMW B;  2VZI B;  3KY9 A;  3VP7 A;  2D86 A;  3HOP A;  5A37 A;  1WYN A;  1BKR A;  1AOA A;  3JAK M;  2VZG B;  2D87 A;  2YRN A;  4EDM A;  1P5S A;  2QJZ A;  2HL9 A;  2R8U A;  2VE7 C;  4EDL A;  3CO1 A;  3JAR M;  1MB8 A;  2EE7 A;  2QJX A;  2JV9 A;  2EYN A;  3FER A;  1BHD A;  1SH6 A;  1WYM A;  1EUV A;  2E9K A;  3EAY A;  4TXK A;  1WYQ A;  1TJT A;  5FMU A;  2EYI A;  4DDP A;  5BVR A;  1UJO A;  2WA7 A;  5A38 A;  4Q58 A;  1WYO A;  4LVR A;  2VZD A;  1UEG A;  1WYL A;  2L3G A;  2WA6 A;  4LVP A;  2EQO A;  1V5K A; 
#chains in the Genus database with same CATH homology
 4EDN A;  1AA2 A;  4Q59 A;  1WIX A;  1QAG A;  2D88 A;  2RR8 A;  2R0O A;  4B7L A;  5A4B A;  5A36 A;  2VZC A;  5L0O A;  1RT8 A;  3HOC A;  1PA7 A;  1WJO A;  5J8E A;  2K3S A;  2WA5 A;  1WKU A;  2K2R A;  1SH5 A;  1VKA A;  4Q57 B;  3JAL M;  1WYP A;  1H67 A;  3I6X A;  3F7P A;  1P2X A;  3REP B;  2D85 A;  3HOR A;  4TXI A;  1PXY A;  2DK9 A;  1WYR A;  1DXX A;  2D89 A;  3KMU B;  2WFN A;  3KMW B;  2VZI B;  3KY9 A;  2D86 A;  3HOP A;  5A37 A;  1WYN A;  1BKR A;  1AOA A;  3JAK M;  2VZG B;  2D87 A;  2YRN A;  4EDM A;  1P5S A;  2QJZ A;  2R8U A;  4EDL A;  3CO1 A;  3JAR M;  1MB8 A;  2EE7 A;  2QJX A;  2JV9 A;  2EYN A;  3FER A;  1BHD A;  1SH6 A;  1WYM A;  2E9K A;  4TXK A;  1WYQ A;  1TJT A;  2EYI A;  5BVR A;  1UJO A;  2WA7 A;  5A38 A;  4Q58 A;  1WYO A;  2VZD A;  1UEG A;  1WYL A;  2L3G A;  2WA6 A;  1V5K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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