2D89 | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	119
structure length	119
Chain Sequence	GSSGSSGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 119 atoms

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119 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein, protein binding
source organism	Homo sapiens
publication title	Solution structure of the CH domain from human EH domain binding protein 1 rcsb
molecule keywords	EHBP1 protein
total genus	24
structure length	119
sequence length	119
ec nomenclature
pdb deposition date	2005-12-02

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin; domain 1	Calponin-like domain	2d89A01

2L3GA 3JALM 1P5SA 2EYNA 2R0OA 5L0OA 3HOCA 1P2XA 2WA5A 2JV9A 3HOPA 1WYMA 2QJXA 3CO1A 2R8UA 2D85A 2D87A 3KMWB 1WIXA 5BVRA 4EDLA 2WA6A 1PA7A 1AOAA 2DK9A 1SH5A 3F7PA 2D89A 2K3SA 1AA2A 2E9KA 4EDMA 4EDNA 1SH6A 5J8EA 1MB8A 1TJTA 2VZIB 3KY9A 1WJOA 1V5KA 3HORA 1WYRA 1UJOA 1RT8A 4Q58A 1WYOA 1PXYA 2VZGB 4Q59A 5A36A 1WKUA 1WYPA 1VKAA 5A37A 1BHDA 2RR8A 2QJZA 3KMUB 1DXXA 3FERA 1WYLA 2WA7A 4TXIA 1WYQA 4TXKA 3JARM 2D88A 1QAGA 1BKRA 2VZDA 4B7LA 1UEGA 5A38A 2D86A 2K2RA 2VZCA 2EE7A 2EYIA 2YRNA 4Q57B 5A4BA 2WFNA 3JAKM 3REPB 1WYNA 1H67A 3I6XA
chains in the Genus database with same CATH superfamily

2L3GA 3JALM 1P5SA 2EYNA 2R0OA 2EQOA 5L0OA 5FMUA 3HOCA 1P2XA 2WA5A 2JV9A 3HOPA 1WYMA 2QJXA 3CO1A 2R8UA 2D85A 2D87A 3KMWB 1WIXA 5BVRA 4EDLA 2WA6A 1PA7A 2VE7A 1AOAA 2DK9A 2IGPA 1SH5A 3F7PA 2VE7C 2D89A 2K3SA 1AA2A 2E9KA 3VP7A 4EDMA 4EDNA 1SH6A 5J8EA 1MB8A 1TJTA 2VZIB 3KY9A 2HL9A 2WE6A 1WJOA 1V5KA 3HORA 1WYRA 1UJOA 1RT8A 4Q58A 1WYOA 1PXYA 4LVPA 2HL8A 2VZGB 4LVRA 3EAYA 1EUVA 4DDPA 4Q59A 5A36A 1WKUA 1WYPA 1VKAA 5A37A 1BHDA 2RR8A 2QJZA 3KMUB 1DXXA 3FERA 1WYLA 2WA7A 4TXIA 1WYQA 4TXKA 3JARM 5FMTA 2D88A 1QAGA 1BKRA 2VZDA 4B7LA 1UEGA 5A38A 2D86A 2K2RA 2VZCA 2EE7A 2EYIA 2YRNA 4Q57B 5A4BA 2HKPA 2WDTA 2WFNA 3JAKM 3REPB 1WYNA 1H67A 3I6XA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2L3G A;  3JAL M;  1P5S A;  2EYN A;  2R0O A;  5L0O A;  3HOC A;  1P2X A;  2WA5 A;  2JV9 A;  3HOP A;  1WYM A;  2QJX A;  3CO1 A;  2R8U A;  2D85 A;  2D87 A;  3KMW B;  1WIX A;  5BVR A;  4EDL A;  2WA6 A;  1PA7 A;  1AOA A;  2DK9 A;  1SH5 A;  3F7P A;  2D89 A;  2K3S A;  1AA2 A;  2E9K A;  4EDM A;  4EDN A;  1SH6 A;  5J8E A;  1MB8 A;  1TJT A;  2VZI B;  3KY9 A;  1WJO A;  1V5K A;  3HOR A;  1WYR A;  1UJO A;  1RT8 A;  4Q58 A;  1WYO A;  1PXY A;  2VZG B;  4Q59 A;  5A36 A;  1WKU A;  1WYP A;  1VKA A;  5A37 A;  1BHD A;  2RR8 A;  2QJZ A;  3KMU B;  1DXX A;  3FER A;  1WYL A;  2WA7 A;  4TXI A;  1WYQ A;  4TXK A;  3JAR M;  2D88 A;  1QAG A;  1BKR A;  2VZD A;  4B7L A;  1UEG A;  5A38 A;  2D86 A;  2K2R A;  2VZC A;  2EE7 A;  2EYI A;  2YRN A;  4Q57 B;  5A4B A;  2WFN A;  3JAK M;  3REP B;  1WYN A;  1H67 A;  3I6X A; 
#chains in the Genus database with same CATH topology
 2L3G A;  3JAL M;  1P5S A;  2EYN A;  2R0O A;  2EQO A;  5L0O A;  5FMU A;  3HOC A;  1P2X A;  2WA5 A;  2JV9 A;  3HOP A;  1WYM A;  2QJX A;  3CO1 A;  2R8U A;  2D85 A;  2D87 A;  3KMW B;  1WIX A;  5BVR A;  4EDL A;  2WA6 A;  1PA7 A;  2VE7 A;  1AOA A;  2DK9 A;  2IGP A;  1SH5 A;  3F7P A;  2VE7 C;  2D89 A;  2K3S A;  1AA2 A;  2E9K A;  3VP7 A;  4EDM A;  4EDN A;  1SH6 A;  5J8E A;  1MB8 A;  1TJT A;  2VZI B;  3KY9 A;  2HL9 A;  2WE6 A;  1WJO A;  1V5K A;  3HOR A;  1WYR A;  1UJO A;  1RT8 A;  4Q58 A;  1WYO A;  1PXY A;  4LVP A;  2HL8 A;  2VZG B;  4LVR A;  3EAY A;  1EUV A;  4DDP A;  4Q59 A;  5A36 A;  1WKU A;  1WYP A;  1VKA A;  5A37 A;  1BHD A;  2RR8 A;  2QJZ A;  3KMU B;  1DXX A;  3FER A;  1WYL A;  2WA7 A;  4TXI A;  1WYQ A;  4TXK A;  3JAR M;  5FMT A;  2D88 A;  1QAG A;  1BKR A;  2VZD A;  4B7L A;  1UEG A;  5A38 A;  2D86 A;  2K2R A;  2VZC A;  2EE7 A;  2EYI A;  2YRN A;  4Q57 B;  5A4B A;  2HKP A;  2WDT A;  2WFN A;  3JAK M;  3REP B;  1WYN A;  1H67 A;  3I6X A; 
#chains in the Genus database with same CATH homology
 2L3G A;  3JAL M;  1P5S A;  2EYN A;  2R0O A;  5L0O A;  3HOC A;  1P2X A;  2WA5 A;  2JV9 A;  3HOP A;  1WYM A;  2QJX A;  3CO1 A;  2R8U A;  2D85 A;  2D87 A;  3KMW B;  1WIX A;  5BVR A;  4EDL A;  2WA6 A;  1PA7 A;  1AOA A;  2DK9 A;  1SH5 A;  3F7P A;  2D89 A;  2K3S A;  1AA2 A;  2E9K A;  4EDM A;  4EDN A;  1SH6 A;  5J8E A;  1MB8 A;  1TJT A;  2VZI B;  3KY9 A;  1WJO A;  1V5K A;  3HOR A;  1WYR A;  1UJO A;  1RT8 A;  4Q58 A;  1WYO A;  1PXY A;  2VZG B;  4Q59 A;  5A36 A;  1WKU A;  1WYP A;  1VKA A;  5A37 A;  1BHD A;  2RR8 A;  2QJZ A;  3KMU B;  1DXX A;  3FER A;  1WYL A;  2WA7 A;  4TXI A;  1WYQ A;  4TXK A;  3JAR M;  2D88 A;  1QAG A;  1BKR A;  2VZD A;  4B7L A;  1UEG A;  5A38 A;  2D86 A;  2K2R A;  2VZC A;  2EE7 A;  2EYI A;  2YRN A;  4Q57 B;  5A4B A;  2WFN A;  3JAK M;  3REP B;  1WYN A;  1H67 A;  3I6X A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2D89A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN