2D89A

Solution structure of the ch domain from human eh domain binding protein 1
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
119
structure length
119
Chain Sequence
GSSGSSGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the CH domain from human EH domain binding protein 1
rcsb
molecule tags Structural protein, protein binding
source organism Homo sapiens
molecule keywords EHBP1 protein
total genus 24
structure length 119
sequence length 119
ec nomenclature
pdb deposition date 2005-12-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2d89A01
2VZCA 2QJZA 2WA6A 4TXKA 3REPB 5A37A 4EDNA 1MB8A 3FERA 1WYLA 5BVRA 2JV9A 1BKRA 1AA2A 4B7LA 5L0OA 1RT8A 1QAGA 2D87A 3I6XA 5A4BA 2WFNA 1WYOA 1PXYA 3HOCA 2R0OA 3KMWB 2D88A 2WA5A 2QJXA 4EDMA 2EE7A 5A36A 4TXIA 5J8EA 2VZGB 4EDLA 2L3GA 1H67A 4Q59A 3CO1A 2D86A 1VKAA 2RR8A 1V5KA 2EYIA 3KY9A 2E9KA 3JALM 1P2XA 1P5SA 1WYNA 4Q57B 3HORA 1WIXA 1TJTA 1AOAA 3HOPA 1WYQA 1PA7A 2D85A 2WA7A 1UEGA 2YRNA 1WYMA 2K3SA 1SH5A 1DXXA 1UJOA 3F7PA 1WJOA 3JARM 2DK9A 2VZDA 2K2RA 5A38A 1BHDA 1WYRA 3KMUB 1WKUA 2R8UA 1WYPA 4Q58A 1SH6A 2EYNA 2D89A 2VZIB 3JAKM
chains in the Genus database with same CATH superfamily
2VZCA 2QJZA 4LVPA 2WA6A 4TXKA 5FMTA 3REPB 5A37A 4EDNA 1MB8A 3FERA 1WYLA 5FMUA 5BVRA 2JV9A 1BKRA 1AA2A 4B7LA 4DDPA 5L0OA 1RT8A 1QAGA 2D87A 3VP7A 3I6XA 5A4BA 2WFNA 3EAYA 1WYOA 1PXYA 3HOCA 2HKPA 2R0OA 2WDTA 3KMWB 2D88A 2WA5A 2QJXA 4EDMA 2EE7A 4LVRA 2EQOA 5A36A 4TXIA 5J8EA 2VZGB 4EDLA 2L3GA 1H67A 4Q59A 3CO1A 2D86A 1VKAA 2RR8A 1V5KA 2EYIA 3KY9A 2IGPA 2E9KA 3JALM 1P2XA 1P5SA 1WYNA 4Q57B 3HORA 1WIXA 1TJTA 1AOAA 3HOPA 1WYQA 2VE7C 1PA7A 2D85A 2WA7A 1UEGA 2YRNA 2HL9A 1WYMA 2K3SA 1SH5A 2WE6A 1DXXA 1UJOA 2HL8A 2VE7A 3F7PA 1WJOA 3JARM 2DK9A 2VZDA 1EUVA 2K2RA 5A38A 1BHDA 1WYRA 3KMUB 1WKUA 2R8UA 1WYPA 4Q58A 1SH6A 2EYNA 2D89A 2VZIB 3JAKM
chains in the Genus database with same CATH topology
2VZCA 2QJZA 2WA6A 4TXKA 3REPB 5A37A 4EDNA 1MB8A 3FERA 1WYLA 5BVRA 2JV9A 1BKRA 1AA2A 4B7LA 5L0OA 1RT8A 1QAGA 2D87A 3I6XA 5A4BA 2WFNA 1WYOA 1PXYA 3HOCA 2R0OA 3KMWB 2D88A 2WA5A 2QJXA 4EDMA 2EE7A 5A36A 4TXIA 5J8EA 2VZGB 4EDLA 2L3GA 1H67A 4Q59A 3CO1A 2D86A 1VKAA 2RR8A 1V5KA 2EYIA 3KY9A 2E9KA 3JALM 1P2XA 1P5SA 1WYNA 4Q57B 3HORA 1WIXA 1TJTA 1AOAA 3HOPA 1WYQA 1PA7A 2D85A 2WA7A 1UEGA 2YRNA 1WYMA 2K3SA 1SH5A 1DXXA 1UJOA 3F7PA 1WJOA 3JARM 2DK9A 2VZDA 2K2RA 5A38A 1BHDA 1WYRA 3KMUB 1WKUA 2R8UA 1WYPA 4Q58A 1SH6A 2EYNA 2D89A 2VZIB 3JAKM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VZC A;  2QJZ A;  2WA6 A;  4TXK A;  3REP B;  5A37 A;  4EDN A;  1MB8 A;  3FER A;  1WYL A;  5BVR A;  2JV9 A;  1BKR A;  1AA2 A;  4B7L A;  5L0O A;  1RT8 A;  1QAG A;  2D87 A;  3I6X A;  5A4B A;  2WFN A;  1WYO A;  1PXY A;  3HOC A;  2R0O A;  3KMW B;  2D88 A;  2WA5 A;  2QJX A;  4EDM A;  2EE7 A;  5A36 A;  4TXI A;  5J8E A;  2VZG B;  4EDL A;  2L3G A;  1H67 A;  4Q59 A;  3CO1 A;  2D86 A;  1VKA A;  2RR8 A;  1V5K A;  2EYI A;  3KY9 A;  2E9K A;  3JAL M;  1P2X A;  1P5S A;  1WYN A;  4Q57 B;  3HOR A;  1WIX A;  1TJT A;  1AOA A;  3HOP A;  1WYQ A;  1PA7 A;  2D85 A;  2WA7 A;  1UEG A;  2YRN A;  1WYM A;  2K3S A;  1SH5 A;  1DXX A;  1UJO A;  3F7P A;  1WJO A;  3JAR M;  2DK9 A;  2VZD A;  2K2R A;  5A38 A;  1BHD A;  1WYR A;  3KMU B;  1WKU A;  2R8U A;  1WYP A;  4Q58 A;  1SH6 A;  2EYN A;  2D89 A;  2VZI B;  3JAK M; 
#chains in the Genus database with same CATH topology
 2VZC A;  2QJZ A;  4LVP A;  2WA6 A;  4TXK A;  5FMT A;  3REP B;  5A37 A;  4EDN A;  1MB8 A;  3FER A;  1WYL A;  5FMU A;  5BVR A;  2JV9 A;  1BKR A;  1AA2 A;  4B7L A;  4DDP A;  5L0O A;  1RT8 A;  1QAG A;  2D87 A;  3VP7 A;  3I6X A;  5A4B A;  2WFN A;  3EAY A;  1WYO A;  1PXY A;  3HOC A;  2HKP A;  2R0O A;  2WDT A;  3KMW B;  2D88 A;  2WA5 A;  2QJX A;  4EDM A;  2EE7 A;  4LVR A;  2EQO A;  5A36 A;  4TXI A;  5J8E A;  2VZG B;  4EDL A;  2L3G A;  1H67 A;  4Q59 A;  3CO1 A;  2D86 A;  1VKA A;  2RR8 A;  1V5K A;  2EYI A;  3KY9 A;  2IGP A;  2E9K A;  3JAL M;  1P2X A;  1P5S A;  1WYN A;  4Q57 B;  3HOR A;  1WIX A;  1TJT A;  1AOA A;  3HOP A;  1WYQ A;  2VE7 C;  1PA7 A;  2D85 A;  2WA7 A;  1UEG A;  2YRN A;  2HL9 A;  1WYM A;  2K3S A;  1SH5 A;  2WE6 A;  1DXX A;  1UJO A;  2HL8 A;  2VE7 A;  3F7P A;  1WJO A;  3JAR M;  2DK9 A;  2VZD A;  1EUV A;  2K2R A;  5A38 A;  1BHD A;  1WYR A;  3KMU B;  1WKU A;  2R8U A;  1WYP A;  4Q58 A;  1SH6 A;  2EYN A;  2D89 A;  2VZI B;  3JAK M; 
#chains in the Genus database with same CATH homology
 2VZC A;  2QJZ A;  2WA6 A;  4TXK A;  3REP B;  5A37 A;  4EDN A;  1MB8 A;  3FER A;  1WYL A;  5BVR A;  2JV9 A;  1BKR A;  1AA2 A;  4B7L A;  5L0O A;  1RT8 A;  1QAG A;  2D87 A;  3I6X A;  5A4B A;  2WFN A;  1WYO A;  1PXY A;  3HOC A;  2R0O A;  3KMW B;  2D88 A;  2WA5 A;  2QJX A;  4EDM A;  2EE7 A;  5A36 A;  4TXI A;  5J8E A;  2VZG B;  4EDL A;  2L3G A;  1H67 A;  4Q59 A;  3CO1 A;  2D86 A;  1VKA A;  2RR8 A;  1V5K A;  2EYI A;  3KY9 A;  2E9K A;  3JAL M;  1P2X A;  1P5S A;  1WYN A;  4Q57 B;  3HOR A;  1WIX A;  1TJT A;  1AOA A;  3HOP A;  1WYQ A;  1PA7 A;  2D85 A;  2WA7 A;  1UEG A;  2YRN A;  1WYM A;  2K3S A;  1SH5 A;  1DXX A;  1UJO A;  3F7P A;  1WJO A;  3JAR M;  2DK9 A;  2VZD A;  2K2R A;  5A38 A;  1BHD A;  1WYR A;  3KMU B;  1WKU A;  2R8U A;  1WYP A;  4Q58 A;  1SH6 A;  2EYN A;  2D89 A;  2VZI B;  3JAK M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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