2E9KA

Solution structure of the ch domain from human mical-2
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
121
structure length
121
Chain Sequence
GSSGSSGDIRPSKLLTWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINFDSLNEDDAVENNQLAFDVAEREFGIPPVTTGKEMASAQEPDKLSMVMYLSKFYELFRGTPLRPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (11-22)EMPTYTIV2 (22-25)TIV4 (32-35)TIV5 (33-36)TI2 (35-38)AH3 (65-80)AH4 (88-93)AH2 (41-50)TI3 (37-40)TI4 (51-54)3H1 (57-59)TVIII2 (94-97)TI1 (34-37)TIV7 (61-64)TVIII1 (84-87)AH5 (99-113)Updating...
connected with : NaN
molecule tags Structural protein
source organism Homo sapiens
publication title Solution structure of the CH domain from human MICAL-2
rcsb
molecule keywords Protein MICAL-2
total genus 22
structure length 121
sequence length 121
ec nomenclature ec 1.14.13.225: F-actin monooxygenase.
pdb deposition date 2007-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2e9kA01
2D86A 4Q57B 1WYMA 2EE7A 2VZIB 5J8EA 2D88A 3HOPA 5A37A 2K3SA 1AA2A 2EYIA 3FERA 3KY9A 3F7PA 1WKUA 3REPB 1BHDA 3JALM 2YRNA 1WYNA 2WA6A 1P2XA 4B7LA 2EYNA 2D89A 1VKAA 2QJXA 3I6XA 1BKRA 1PA7A 2R0OA 1H67A 1DXXA 1P5SA 2K2RA 1AOAA 4Q59A 2WA5A 3HOCA 4TXIA 1PXYA 1SH5A 1WIXA 2R8UA 4EDNA 5BVRA 1V5KA 2WFNA 1RT8A 4Q58A 1WYOA 1UEGA 1MB8A 1QAGA 2DK9A 1WYLA 2VZDA 1SH6A 2L3GA 3KMWB 1TJTA 4EDMA 5A4BA 3KMUB 3HORA 2JV9A 2QJZA 2E9KA 3JARM 2WA7A 1UJOA 2D85A 5A36A 4TXKA 1WYPA 3JAKM 1WJOA 3CO1A 5A38A 5L0OA 2RR8A 1WYQA 2D87A 2VZGB 1WYRA 4EDLA 2VZCA
chains in the Genus database with same CATH superfamily
2D86A 4Q57B 1WYMA 2EE7A 2VZIB 5J8EA 2D88A 3HOPA 5A37A 2K3SA 1AA2A 2EYIA 3FERA 3KY9A 3F7PA 1WKUA 3REPB 1BHDA 3JALM 2YRNA 1WYNA 2WA6A 1P2XA 4B7LA 2EYNA 2VE7C 2VE7A 2D89A 1VKAA 2QJXA 3I6XA 1BKRA 1PA7A 2R0OA 1H67A 3EAYA 1DXXA 1P5SA 2K2RA 1AOAA 4Q59A 2WA5A 3HOCA 4TXIA 1PXYA 1SH5A 4LVPA 1WIXA 2R8UA 4EDNA 5BVRA 1V5KA 2WFNA 1RT8A 4Q58A 1WYOA 1UEGA 1MB8A 1QAGA 2DK9A 3VP7A 1WYLA 2IGPA 2VZDA 1SH6A 2L3GA 2HL9A 3KMWB 1TJTA 4EDMA 5A4BA 2WE6A 3HORA 3KMUB 4LVRA 2JV9A 2QJZA 2E9KA 2HL8A 2WA7A 3JARM 1UJOA 4DDPA 2D85A 5A36A 4TXKA 2EQOA 1WYPA 3JAKM 1WJOA 3CO1A 5A38A 5L0OA 2WDTA 5FMUA 2RR8A 2HKPA 1WYQA 2D87A 2VZGB 1EUVA 1WYRA 4EDLA 2VZCA 5FMTA
chains in the Genus database with same CATH topology
2D86A 4Q57B 1WYMA 2EE7A 2VZIB 5J8EA 2D88A 3HOPA 5A37A 2K3SA 1AA2A 2EYIA 3FERA 3KY9A 3F7PA 1WKUA 3REPB 1BHDA 3JALM 2YRNA 1WYNA 2WA6A 1P2XA 4B7LA 2EYNA 2D89A 1VKAA 2QJXA 3I6XA 1BKRA 1PA7A 2R0OA 1H67A 1DXXA 1P5SA 2K2RA 1AOAA 4Q59A 2WA5A 3HOCA 4TXIA 1PXYA 1SH5A 1WIXA 2R8UA 4EDNA 5BVRA 1V5KA 2WFNA 1RT8A 4Q58A 1WYOA 1UEGA 1MB8A 1QAGA 2DK9A 1WYLA 2VZDA 1SH6A 2L3GA 3KMWB 1TJTA 4EDMA 5A4BA 3KMUB 3HORA 2JV9A 2QJZA 2E9KA 3JARM 2WA7A 1UJOA 2D85A 5A36A 4TXKA 1WYPA 3JAKM 1WJOA 3CO1A 5A38A 5L0OA 2RR8A 1WYQA 2D87A 2VZGB 1WYRA 4EDLA 2VZCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D86 A;  4Q57 B;  1WYM A;  2EE7 A;  2VZI B;  5J8E A;  2D88 A;  3HOP A;  5A37 A;  2K3S A;  1AA2 A;  2EYI A;  3FER A;  3KY9 A;  3F7P A;  1WKU A;  3REP B;  1BHD A;  3JAL M;  2YRN A;  1WYN A;  2WA6 A;  1P2X A;  4B7L A;  2EYN A;  2D89 A;  1VKA A;  2QJX A;  3I6X A;  1BKR A;  1PA7 A;  2R0O A;  1H67 A;  1DXX A;  1P5S A;  2K2R A;  1AOA A;  4Q59 A;  2WA5 A;  3HOC A;  4TXI A;  1PXY A;  1SH5 A;  1WIX A;  2R8U A;  4EDN A;  5BVR A;  1V5K A;  2WFN A;  1RT8 A;  4Q58 A;  1WYO A;  1UEG A;  1MB8 A;  1QAG A;  2DK9 A;  1WYL A;  2VZD A;  1SH6 A;  2L3G A;  3KMW B;  1TJT A;  4EDM A;  5A4B A;  3KMU B;  3HOR A;  2JV9 A;  2QJZ A;  2E9K A;  3JAR M;  2WA7 A;  1UJO A;  2D85 A;  5A36 A;  4TXK A;  1WYP A;  3JAK M;  1WJO A;  3CO1 A;  5A38 A;  5L0O A;  2RR8 A;  1WYQ A;  2D87 A;  2VZG B;  1WYR A;  4EDL A;  2VZC A; 
#chains in the Genus database with same CATH topology
 2D86 A;  4Q57 B;  1WYM A;  2EE7 A;  2VZI B;  5J8E A;  2D88 A;  3HOP A;  5A37 A;  2K3S A;  1AA2 A;  2EYI A;  3FER A;  3KY9 A;  3F7P A;  1WKU A;  3REP B;  1BHD A;  3JAL M;  2YRN A;  1WYN A;  2WA6 A;  1P2X A;  4B7L A;  2EYN A;  2VE7 C;  2VE7 A;  2D89 A;  1VKA A;  2QJX A;  3I6X A;  1BKR A;  1PA7 A;  2R0O A;  1H67 A;  3EAY A;  1DXX A;  1P5S A;  2K2R A;  1AOA A;  4Q59 A;  2WA5 A;  3HOC A;  4TXI A;  1PXY A;  1SH5 A;  4LVP A;  1WIX A;  2R8U A;  4EDN A;  5BVR A;  1V5K A;  2WFN A;  1RT8 A;  4Q58 A;  1WYO A;  1UEG A;  1MB8 A;  1QAG A;  2DK9 A;  3VP7 A;  1WYL A;  2IGP A;  2VZD A;  1SH6 A;  2L3G A;  2HL9 A;  3KMW B;  1TJT A;  4EDM A;  5A4B A;  2WE6 A;  3HOR A;  3KMU B;  4LVR A;  2JV9 A;  2QJZ A;  2E9K A;  2HL8 A;  2WA7 A;  3JAR M;  1UJO A;  4DDP A;  2D85 A;  5A36 A;  4TXK A;  2EQO A;  1WYP A;  3JAK M;  1WJO A;  3CO1 A;  5A38 A;  5L0O A;  2WDT A;  5FMU A;  2RR8 A;  2HKP A;  1WYQ A;  2D87 A;  2VZG B;  1EUV A;  1WYR A;  4EDL A;  2VZC A;  5FMT A; 
#chains in the Genus database with same CATH homology
 2D86 A;  4Q57 B;  1WYM A;  2EE7 A;  2VZI B;  5J8E A;  2D88 A;  3HOP A;  5A37 A;  2K3S A;  1AA2 A;  2EYI A;  3FER A;  3KY9 A;  3F7P A;  1WKU A;  3REP B;  1BHD A;  3JAL M;  2YRN A;  1WYN A;  2WA6 A;  1P2X A;  4B7L A;  2EYN A;  2D89 A;  1VKA A;  2QJX A;  3I6X A;  1BKR A;  1PA7 A;  2R0O A;  1H67 A;  1DXX A;  1P5S A;  2K2R A;  1AOA A;  4Q59 A;  2WA5 A;  3HOC A;  4TXI A;  1PXY A;  1SH5 A;  1WIX A;  2R8U A;  4EDN A;  5BVR A;  1V5K A;  2WFN A;  1RT8 A;  4Q58 A;  1WYO A;  1UEG A;  1MB8 A;  1QAG A;  2DK9 A;  1WYL A;  2VZD A;  1SH6 A;  2L3G A;  3KMW B;  1TJT A;  4EDM A;  5A4B A;  3KMU B;  3HOR A;  2JV9 A;  2QJZ A;  2E9K A;  3JAR M;  2WA7 A;  1UJO A;  2D85 A;  5A36 A;  4TXK A;  1WYP A;  3JAK M;  1WJO A;  3CO1 A;  5A38 A;  5L0O A;  2RR8 A;  1WYQ A;  2D87 A;  2VZG B;  1WYR A;  4EDL A;  2VZC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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