2EYNA

Crystal structure of the actin-binding domain of human alpha-actinin 1 at 1.8 angstrom resolution
Total Genus 81

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
234
structure length
229
Chain Sequence
AGHMEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPKMRVHKISNVNKALDFIASKGVKLIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQEFLEPG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI8 (188-191)AH1 (28-45)AH3 (86-102)AH2 (63-73)TIV1 (52-55)3H1 (46-48)TI1 (54-57)TI3 (59-62)TIV2 (55-58)AH4 (112-117)AH5 (120-136)TI5 (161-164)TIV3 (140-143)S1 (140-141)TI4 (136-139)S2 (144-145)AH6 (146-159)TI6 (173-176)3H2 (171-173)AH7 (177-186)3H3 (193-195)TI9 (197-200)AH8 (201-216)AH9 (224-229)TI2 (57-60)TI7 (187-190)Updating...
connected with : NaN
molecule tags Structural protein
source organism Homo sapiens
publication title Crystal structure of the actin-binding domain of alpha-actinin 1: Evaluating two competing actin-binding models.
pubmed doi rcsb
molecule keywords Alpha-actinin 1
total genus 81
structure length 229
sequence length 234
ec nomenclature
pdb deposition date 2005-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2eynA02
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2eynA01
1UEGA 1AOAA 1AA2A 3JALM 2VZCA 5A37A 2D89A 3HORA 2D85A 4TXIA 1WKUA 1WYMA 1WYLA 3KMWB 5A4BA 1P2XA 1PA7A 1V5KA 2D87A 1SH6A 1VKAA 2WA7A 1QAGA 4Q59A 2YRNA 3KMUB 2EYNA 1SH5A 2JV9A 5J8EA 2EYIA 3REPB 2VZDA 2VZIB 2WA6A 4Q57B 1BHDA 1RT8A 1WYOA 1WJOA 2R0OA 1H67A 3JAKM 2RR8A 1WYRA 1WYNA 4B7LA 2K2RA 4Q58A 2EE7A 3I6XA 4EDLA 3JARM 2QJXA 5L0OA 2VZGB 1DXXA 3HOCA 5A36A 2E9KA 4TXKA 3KY9A 1WYQA 2WFNA 2WA5A 1WYPA 2K3SA 1UJOA 1TJTA 2DK9A 2R8UA 1BKRA 1P5SA 1WIXA 2D86A 2D88A 3CO1A 3FERA 3HOPA 4EDMA 4EDNA 2L3GA 5A38A 2QJZA 1PXYA 1MB8A 5BVRA 3F7PA
chains in the Genus database with same CATH superfamily
1UEGA 1AOAA 1AA2A 3JALM 2VZCA 5A37A 2D89A 3HORA 4LVRA 2D85A 4TXIA 4DDPA 1WKUA 1WYMA 1WYLA 3KMWB 2HL9A 2VE7A 5A4BA 1P2XA 2VE7C 1PA7A 1V5KA 2HL8A 2D87A 1SH6A 1VKAA 2WA7A 1QAGA 3VP7A 4Q59A 2YRNA 3EAYA 3KMUB 2EYNA 1SH5A 2JV9A 5J8EA 2EYIA 3REPB 2VZDA 2VZIB 2WA6A 4Q57B 1BHDA 1RT8A 1WYOA 1WJOA 2R0OA 1H67A 3JAKM 2RR8A 1WYRA 1WYNA 2IGPA 4B7LA 2K2RA 4Q58A 2EE7A 3I6XA 4EDLA 3JARM 2HKPA 2QJXA 5L0OA 2VZGB 1DXXA 3HOCA 5A36A 2E9KA 2WDTA 4TXKA 3KY9A 1WYQA 2WFNA 1EUVA 5FMTA 2WA5A 1WYPA 2K3SA 1UJOA 1TJTA 2DK9A 2R8UA 1BKRA 1P5SA 1WIXA 2D86A 2D88A 2EQOA 3CO1A 3FERA 3HOPA 4EDMA 4EDNA 2L3GA 2WE6A 5A38A 2QJZA 4LVPA 1PXYA 5FMUA 1MB8A 5BVRA 3F7PA
chains in the Genus database with same CATH topology
1UEGA 1AOAA 1AA2A 3JALM 2VZCA 5A37A 2D89A 3HORA 2D85A 4TXIA 1WKUA 1WYMA 1WYLA 3KMWB 5A4BA 1P2XA 1PA7A 1V5KA 2D87A 1SH6A 1VKAA 2WA7A 1QAGA 4Q59A 2YRNA 3KMUB 2EYNA 1SH5A 2JV9A 5J8EA 2EYIA 3REPB 2VZDA 2VZIB 2WA6A 4Q57B 1BHDA 1RT8A 1WYOA 1WJOA 2R0OA 1H67A 3JAKM 2RR8A 1WYRA 1WYNA 4B7LA 2K2RA 4Q58A 2EE7A 3I6XA 4EDLA 3JARM 2QJXA 5L0OA 2VZGB 1DXXA 3HOCA 5A36A 2E9KA 4TXKA 3KY9A 1WYQA 2WFNA 2WA5A 1WYPA 2K3SA 1UJOA 1TJTA 2DK9A 2R8UA 1BKRA 1P5SA 1WIXA 2D86A 2D88A 3CO1A 3FERA 3HOPA 4EDMA 4EDNA 2L3GA 5A38A 2QJZA 1PXYA 1MB8A 5BVRA 3F7PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UEG A;  1AOA A;  1AA2 A;  3JAL M;  2VZC A;  5A37 A;  2D89 A;  3HOR A;  2D85 A;  4TXI A;  1WKU A;  1WYM A;  1WYL A;  3KMW B;  5A4B A;  1P2X A;  1PA7 A;  1V5K A;  2D87 A;  1SH6 A;  1VKA A;  2WA7 A;  1QAG A;  4Q59 A;  2YRN A;  3KMU B;  2EYN A;  1SH5 A;  2JV9 A;  5J8E A;  2EYI A;  3REP B;  2VZD A;  2VZI B;  2WA6 A;  4Q57 B;  1BHD A;  1RT8 A;  1WYO A;  1WJO A;  2R0O A;  1H67 A;  3JAK M;  2RR8 A;  1WYR A;  1WYN A;  4B7L A;  2K2R A;  4Q58 A;  2EE7 A;  3I6X A;  4EDL A;  3JAR M;  2QJX A;  5L0O A;  2VZG B;  1DXX A;  3HOC A;  5A36 A;  2E9K A;  4TXK A;  3KY9 A;  1WYQ A;  2WFN A;  2WA5 A;  1WYP A;  2K3S A;  1UJO A;  1TJT A;  2DK9 A;  2R8U A;  1BKR A;  1P5S A;  1WIX A;  2D86 A;  2D88 A;  3CO1 A;  3FER A;  3HOP A;  4EDM A;  4EDN A;  2L3G A;  5A38 A;  2QJZ A;  1PXY A;  1MB8 A;  5BVR A;  3F7P A; 
#chains in the Genus database with same CATH topology
 1UEG A;  1AOA A;  1AA2 A;  3JAL M;  2VZC A;  5A37 A;  2D89 A;  3HOR A;  4LVR A;  2D85 A;  4TXI A;  4DDP A;  1WKU A;  1WYM A;  1WYL A;  3KMW B;  2HL9 A;  2VE7 A;  5A4B A;  1P2X A;  2VE7 C;  1PA7 A;  1V5K A;  2HL8 A;  2D87 A;  1SH6 A;  1VKA A;  2WA7 A;  1QAG A;  3VP7 A;  4Q59 A;  2YRN A;  3EAY A;  3KMU B;  2EYN A;  1SH5 A;  2JV9 A;  5J8E A;  2EYI A;  3REP B;  2VZD A;  2VZI B;  2WA6 A;  4Q57 B;  1BHD A;  1RT8 A;  1WYO A;  1WJO A;  2R0O A;  1H67 A;  3JAK M;  2RR8 A;  1WYR A;  1WYN A;  2IGP A;  4B7L A;  2K2R A;  4Q58 A;  2EE7 A;  3I6X A;  4EDL A;  3JAR M;  2HKP A;  2QJX A;  5L0O A;  2VZG B;  1DXX A;  3HOC A;  5A36 A;  2E9K A;  2WDT A;  4TXK A;  3KY9 A;  1WYQ A;  2WFN A;  1EUV A;  5FMT A;  2WA5 A;  1WYP A;  2K3S A;  1UJO A;  1TJT A;  2DK9 A;  2R8U A;  1BKR A;  1P5S A;  1WIX A;  2D86 A;  2D88 A;  2EQO A;  3CO1 A;  3FER A;  3HOP A;  4EDM A;  4EDN A;  2L3G A;  2WE6 A;  5A38 A;  2QJZ A;  4LVP A;  1PXY A;  5FMU A;  1MB8 A;  5BVR A;  3F7P A; 
#chains in the Genus database with same CATH homology
 1UEG A;  1AOA A;  1AA2 A;  3JAL M;  2VZC A;  5A37 A;  2D89 A;  3HOR A;  2D85 A;  4TXI A;  1WKU A;  1WYM A;  1WYL A;  3KMW B;  5A4B A;  1P2X A;  1PA7 A;  1V5K A;  2D87 A;  1SH6 A;  1VKA A;  2WA7 A;  1QAG A;  4Q59 A;  2YRN A;  3KMU B;  2EYN A;  1SH5 A;  2JV9 A;  5J8E A;  2EYI A;  3REP B;  2VZD A;  2VZI B;  2WA6 A;  4Q57 B;  1BHD A;  1RT8 A;  1WYO A;  1WJO A;  2R0O A;  1H67 A;  3JAK M;  2RR8 A;  1WYR A;  1WYN A;  4B7L A;  2K2R A;  4Q58 A;  2EE7 A;  3I6X A;  4EDL A;  3JAR M;  2QJX A;  5L0O A;  2VZG B;  1DXX A;  3HOC A;  5A36 A;  2E9K A;  4TXK A;  3KY9 A;  1WYQ A;  2WFN A;  2WA5 A;  1WYP A;  2K3S A;  1UJO A;  1TJT A;  2DK9 A;  2R8U A;  1BKR A;  1P5S A;  1WIX A;  2D86 A;  2D88 A;  3CO1 A;  3FER A;  3HOP A;  4EDM A;  4EDN A;  2L3G A;  5A38 A;  2QJZ A;  1PXY A;  1MB8 A;  5BVR A;  3F7P A; 
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