2QJZA

Structural basis of microtubule plus end tracking by xmap215, clip-170 and eb1
Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
121
structure length
121
Chain Sequence
DNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH5 (101-118)TI1 (16-19)AH1 (21-28)TIV1 (17-21)3H2 (58-60)EMPTY3H1 (35-40)AH2 (42-47)TII1 (52-55)AH3 (68-84)TIV2 (49-53)O1 (56-58)AH4 (93-97)TIV3 (62-65)O2 (91-93)Updating...
connected with : NaN
molecule tags Protein binding
source organism Homo sapiens
publication title Structural Basis of Microtubule Plus End Tracking by XMAP215, CLIP-170, and EB1.
pubmed doi rcsb
molecule keywords Microtubule-associated protein RP/EB family member 1
total genus 37
structure length 121
sequence length 121
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2qjzA00
1MB8A 2D85A 2VZGB 1H67A 3KMUB 5A37A 1WYLA 3F7PA 4EDMA 2D89A 5A36A 1RT8A 1WYNA 2VZIB 1WYPA 1V5KA 2R0OA 1PA7A 1UJOA 1P2XA 2QJXA 2K2RA 3HOCA 1WKUA 2EE7A 3JALM 3CO1A 5BVRA 3FERA 1P5SA 1WYMA 4Q58A 1WIXA 3KY9A 1SH5A 5A38A 1VKAA 1DXXA 2WA7A 3KMWB 1SH6A 2WA6A 2WFNA 5J8EA 2YRNA 4Q59A 1AA2A 2EYNA 1UEGA 3JAKM 2EYIA 1BHDA 4TXIA 2VZDA 5L0OA 2JV9A 2K3SA 4EDLA 2WA5A 3REPB 3I6XA 3JARM 1WYOA 4B7LA 2E9KA 2DK9A 1WYQA 2D88A 2R8UA 2D87A 4TXKA 4EDNA 1WJOA 4Q57B 2VZCA 1PXYA 1AOAA 1WYRA 3HORA 5A4BA 2L3GA 2QJZA 1QAGA 2D86A 1TJTA 2RR8A 3HOPA 1BKRA
chains in the Genus database with same CATH superfamily
1MB8A 2D85A 2WE6A 4LVPA 2VZGB 1H67A 3KMUB 5A37A 1WYLA 3F7PA 4EDMA 2D89A 1EUVA 5A36A 3VP7A 1RT8A 1WYNA 2VZIB 1WYPA 1V5KA 2R0OA 1PA7A 1UJOA 2IGPA 1P2XA 5FMUA 2QJXA 2K2RA 3HOCA 1WKUA 2HKPA 2EE7A 3JALM 3CO1A 5BVRA 3FERA 1P5SA 1WYMA 4Q58A 1WIXA 3KY9A 1SH5A 5A38A 1VKAA 1DXXA 2WA7A 3KMWB 1SH6A 2WA6A 2WFNA 2HL8A 2VE7C 5J8EA 2HL9A 3EAYA 2YRNA 4Q59A 1AA2A 2EYNA 4LVRA 1UEGA 5FMTA 3JAKM 2EYIA 1BHDA 4TXIA 2VZDA 5L0OA 2VE7A 2JV9A 2K3SA 4DDPA 4EDLA 2WA5A 3REPB 2EQOA 3I6XA 3JARM 1WYOA 2WDTA 4B7LA 2E9KA 2DK9A 1WYQA 2D88A 2R8UA 2D87A 4TXKA 4EDNA 1WJOA 4Q57B 2VZCA 1PXYA 1AOAA 1WYRA 3HORA 5A4BA 2L3GA 2QJZA 1QAGA 2D86A 1TJTA 2RR8A 3HOPA 1BKRA
chains in the Genus database with same CATH topology
1MB8A 2D85A 2VZGB 1H67A 3KMUB 5A37A 1WYLA 3F7PA 4EDMA 2D89A 5A36A 1RT8A 1WYNA 2VZIB 1WYPA 1V5KA 2R0OA 1PA7A 1UJOA 1P2XA 2QJXA 2K2RA 3HOCA 1WKUA 2EE7A 3JALM 3CO1A 5BVRA 3FERA 1P5SA 1WYMA 4Q58A 1WIXA 3KY9A 1SH5A 5A38A 1VKAA 1DXXA 2WA7A 3KMWB 1SH6A 2WA6A 2WFNA 5J8EA 2YRNA 4Q59A 1AA2A 2EYNA 1UEGA 3JAKM 2EYIA 1BHDA 4TXIA 2VZDA 5L0OA 2JV9A 2K3SA 4EDLA 2WA5A 3REPB 3I6XA 3JARM 1WYOA 4B7LA 2E9KA 2DK9A 1WYQA 2D88A 2R8UA 2D87A 4TXKA 4EDNA 1WJOA 4Q57B 2VZCA 1PXYA 1AOAA 1WYRA 3HORA 5A4BA 2L3GA 2QJZA 1QAGA 2D86A 1TJTA 2RR8A 3HOPA 1BKRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MB8 A;  2D85 A;  2VZG B;  1H67 A;  3KMU B;  5A37 A;  1WYL A;  3F7P A;  4EDM A;  2D89 A;  5A36 A;  1RT8 A;  1WYN A;  2VZI B;  1WYP A;  1V5K A;  2R0O A;  1PA7 A;  1UJO A;  1P2X A;  2QJX A;  2K2R A;  3HOC A;  1WKU A;  2EE7 A;  3JAL M;  3CO1 A;  5BVR A;  3FER A;  1P5S A;  1WYM A;  4Q58 A;  1WIX A;  3KY9 A;  1SH5 A;  5A38 A;  1VKA A;  1DXX A;  2WA7 A;  3KMW B;  1SH6 A;  2WA6 A;  2WFN A;  5J8E A;  2YRN A;  4Q59 A;  1AA2 A;  2EYN A;  1UEG A;  3JAK M;  2EYI A;  1BHD A;  4TXI A;  2VZD A;  5L0O A;  2JV9 A;  2K3S A;  4EDL A;  2WA5 A;  3REP B;  3I6X A;  3JAR M;  1WYO A;  4B7L A;  2E9K A;  2DK9 A;  1WYQ A;  2D88 A;  2R8U A;  2D87 A;  4TXK A;  4EDN A;  1WJO A;  4Q57 B;  2VZC A;  1PXY A;  1AOA A;  1WYR A;  3HOR A;  5A4B A;  2L3G A;  2QJZ A;  1QAG A;  2D86 A;  1TJT A;  2RR8 A;  3HOP A;  1BKR A; 
#chains in the Genus database with same CATH topology
 1MB8 A;  2D85 A;  2WE6 A;  4LVP A;  2VZG B;  1H67 A;  3KMU B;  5A37 A;  1WYL A;  3F7P A;  4EDM A;  2D89 A;  1EUV A;  5A36 A;  3VP7 A;  1RT8 A;  1WYN A;  2VZI B;  1WYP A;  1V5K A;  2R0O A;  1PA7 A;  1UJO A;  2IGP A;  1P2X A;  5FMU A;  2QJX A;  2K2R A;  3HOC A;  1WKU A;  2HKP A;  2EE7 A;  3JAL M;  3CO1 A;  5BVR A;  3FER A;  1P5S A;  1WYM A;  4Q58 A;  1WIX A;  3KY9 A;  1SH5 A;  5A38 A;  1VKA A;  1DXX A;  2WA7 A;  3KMW B;  1SH6 A;  2WA6 A;  2WFN A;  2HL8 A;  2VE7 C;  5J8E A;  2HL9 A;  3EAY A;  2YRN A;  4Q59 A;  1AA2 A;  2EYN A;  4LVR A;  1UEG A;  5FMT A;  3JAK M;  2EYI A;  1BHD A;  4TXI A;  2VZD A;  5L0O A;  2VE7 A;  2JV9 A;  2K3S A;  4DDP A;  4EDL A;  2WA5 A;  3REP B;  2EQO A;  3I6X A;  3JAR M;  1WYO A;  2WDT A;  4B7L A;  2E9K A;  2DK9 A;  1WYQ A;  2D88 A;  2R8U A;  2D87 A;  4TXK A;  4EDN A;  1WJO A;  4Q57 B;  2VZC A;  1PXY A;  1AOA A;  1WYR A;  3HOR A;  5A4B A;  2L3G A;  2QJZ A;  1QAG A;  2D86 A;  1TJT A;  2RR8 A;  3HOP A;  1BKR A; 
#chains in the Genus database with same CATH homology
 1MB8 A;  2D85 A;  2VZG B;  1H67 A;  3KMU B;  5A37 A;  1WYL A;  3F7P A;  4EDM A;  2D89 A;  5A36 A;  1RT8 A;  1WYN A;  2VZI B;  1WYP A;  1V5K A;  2R0O A;  1PA7 A;  1UJO A;  1P2X A;  2QJX A;  2K2R A;  3HOC A;  1WKU A;  2EE7 A;  3JAL M;  3CO1 A;  5BVR A;  3FER A;  1P5S A;  1WYM A;  4Q58 A;  1WIX A;  3KY9 A;  1SH5 A;  5A38 A;  1VKA A;  1DXX A;  2WA7 A;  3KMW B;  1SH6 A;  2WA6 A;  2WFN A;  5J8E A;  2YRN A;  4Q59 A;  1AA2 A;  2EYN A;  1UEG A;  3JAK M;  2EYI A;  1BHD A;  4TXI A;  2VZD A;  5L0O A;  2JV9 A;  2K3S A;  4EDL A;  2WA5 A;  3REP B;  3I6X A;  3JAR M;  1WYO A;  4B7L A;  2E9K A;  2DK9 A;  1WYQ A;  2D88 A;  2R8U A;  2D87 A;  4TXK A;  4EDN A;  1WJO A;  4Q57 B;  2VZC A;  1PXY A;  1AOA A;  1WYR A;  3HOR A;  5A4B A;  2L3G A;  2QJZ A;  1QAG A;  2D86 A;  1TJT A;  2RR8 A;  3HOP A;  1BKR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.