2R8UA

Structure of fragment of human end-binding protein 1 (eb1) containing the n-terminal domain at 1.35 a resolution
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
131
structure length
131
Chain Sequence
MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of fragment of human end-binding protein 1 (EB1) containing the N-terminal domain at 1.35 A resolution
rcsb
molecule tags Cell cycle
source organism Homo sapiens
molecule keywords Microtubule-associated protein RP/EB family member 1
total genus 40
structure length 131
sequence length 131
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
A PF03271 EB1 EB1-like C-terminal motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2r8uA00
1WJOA 3HOCA 3KMWB 2D89A 1TJTA 3F7PA 2D86A 1WYPA 2WFNA 1P5SA 1WYLA 1WYNA 2EYIA 3HOPA 5J8EA 2D85A 1RT8A 4Q57B 2D88A 2R8UA 3JALM 2QJZA 1AA2A 1WIXA 3REPB 1DXXA 1PXYA 3FERA 3JAKM 2VZDA 5BVRA 1WYQA 3KMUB 2K2RA 4Q59A 5A38A 4B7LA 1UEGA 2K3SA 4Q58A 4TXKA 2D87A 3KY9A 2JV9A 1H67A 2DK9A 1WKUA 5A4BA 3CO1A 3HORA 2WA6A 1UJOA 1SH6A 2EYNA 3I6XA 2L3GA 1P2XA 1SH5A 2RR8A 1VKAA 4EDLA 1QAGA 2VZGB 2VZIB 4EDNA 1MB8A 5L0OA 2YRNA 2WA7A 2R0OA 4TXIA 1WYOA 1WYMA 4EDMA 2VZCA 1V5KA 1BHDA 1PA7A 3JARM 5A36A 2E9KA 5A37A 2WA5A 1WYRA 2QJXA 1AOAA 1BKRA 2EE7A
chains in the Genus database with same CATH superfamily
1WJOA 3HOCA 1EUVA 3KMWB 2D89A 1TJTA 3EAYA 3F7PA 2D86A 4LVRA 1WYPA 4LVPA 2WFNA 1P5SA 1WYLA 1WYNA 2EYIA 3HOPA 5J8EA 2D85A 1RT8A 4Q57B 2D88A 2R8UA 2WDTA 3JALM 2QJZA 2VE7C 1AA2A 1WIXA 2IGPA 3REPB 1DXXA 1PXYA 5FMTA 3FERA 3JAKM 2VZDA 5BVRA 1WYQA 3KMUB 2K2RA 4Q59A 5A38A 4B7LA 1UEGA 2K3SA 4Q58A 4TXKA 2D87A 3KY9A 2JV9A 1H67A 2DK9A 1WKUA 5A4BA 3CO1A 3HORA 2WA6A 2VE7A 1UJOA 1SH6A 2EYNA 3I6XA 2L3GA 1P2XA 1SH5A 2RR8A 1VKAA 4EDLA 1QAGA 3VP7A 2VZGB 2HL8A 2VZIB 4EDNA 1MB8A 5L0OA 5FMUA 4DDPA 2YRNA 2WA7A 2R0OA 4TXIA 1WYOA 1WYMA 4EDMA 2VZCA 2HL9A 1V5KA 1BHDA 1PA7A 3JARM 2EQOA 5A36A 2E9KA 5A37A 2WA5A 2HKPA 1WYRA 2QJXA 1AOAA 2WE6A 1BKRA 2EE7A
chains in the Genus database with same CATH topology
1WJOA 3HOCA 3KMWB 2D89A 1TJTA 3F7PA 2D86A 1WYPA 2WFNA 1P5SA 1WYLA 1WYNA 2EYIA 3HOPA 5J8EA 2D85A 1RT8A 4Q57B 2D88A 2R8UA 3JALM 2QJZA 1AA2A 1WIXA 3REPB 1DXXA 1PXYA 3FERA 3JAKM 2VZDA 5BVRA 1WYQA 3KMUB 2K2RA 4Q59A 5A38A 4B7LA 1UEGA 2K3SA 4Q58A 4TXKA 2D87A 3KY9A 2JV9A 1H67A 2DK9A 1WKUA 5A4BA 3CO1A 3HORA 2WA6A 1UJOA 1SH6A 2EYNA 3I6XA 2L3GA 1P2XA 1SH5A 2RR8A 1VKAA 4EDLA 1QAGA 2VZGB 2VZIB 4EDNA 1MB8A 5L0OA 2YRNA 2WA7A 2R0OA 4TXIA 1WYOA 1WYMA 4EDMA 2VZCA 1V5KA 1BHDA 1PA7A 3JARM 5A36A 2E9KA 5A37A 2WA5A 1WYRA 2QJXA 1AOAA 1BKRA 2EE7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WJO A;  3HOC A;  3KMW B;  2D89 A;  1TJT A;  3F7P A;  2D86 A;  1WYP A;  2WFN A;  1P5S A;  1WYL A;  1WYN A;  2EYI A;  3HOP A;  5J8E A;  2D85 A;  1RT8 A;  4Q57 B;  2D88 A;  2R8U A;  3JAL M;  2QJZ A;  1AA2 A;  1WIX A;  3REP B;  1DXX A;  1PXY A;  3FER A;  3JAK M;  2VZD A;  5BVR A;  1WYQ A;  3KMU B;  2K2R A;  4Q59 A;  5A38 A;  4B7L A;  1UEG A;  2K3S A;  4Q58 A;  4TXK A;  2D87 A;  3KY9 A;  2JV9 A;  1H67 A;  2DK9 A;  1WKU A;  5A4B A;  3CO1 A;  3HOR A;  2WA6 A;  1UJO A;  1SH6 A;  2EYN A;  3I6X A;  2L3G A;  1P2X A;  1SH5 A;  2RR8 A;  1VKA A;  4EDL A;  1QAG A;  2VZG B;  2VZI B;  4EDN A;  1MB8 A;  5L0O A;  2YRN A;  2WA7 A;  2R0O A;  4TXI A;  1WYO A;  1WYM A;  4EDM A;  2VZC A;  1V5K A;  1BHD A;  1PA7 A;  3JAR M;  5A36 A;  2E9K A;  5A37 A;  2WA5 A;  1WYR A;  2QJX A;  1AOA A;  1BKR A;  2EE7 A; 
#chains in the Genus database with same CATH topology
 1WJO A;  3HOC A;  1EUV A;  3KMW B;  2D89 A;  1TJT A;  3EAY A;  3F7P A;  2D86 A;  4LVR A;  1WYP A;  4LVP A;  2WFN A;  1P5S A;  1WYL A;  1WYN A;  2EYI A;  3HOP A;  5J8E A;  2D85 A;  1RT8 A;  4Q57 B;  2D88 A;  2R8U A;  2WDT A;  3JAL M;  2QJZ A;  2VE7 C;  1AA2 A;  1WIX A;  2IGP A;  3REP B;  1DXX A;  1PXY A;  5FMT A;  3FER A;  3JAK M;  2VZD A;  5BVR A;  1WYQ A;  3KMU B;  2K2R A;  4Q59 A;  5A38 A;  4B7L A;  1UEG A;  2K3S A;  4Q58 A;  4TXK A;  2D87 A;  3KY9 A;  2JV9 A;  1H67 A;  2DK9 A;  1WKU A;  5A4B A;  3CO1 A;  3HOR A;  2WA6 A;  2VE7 A;  1UJO A;  1SH6 A;  2EYN A;  3I6X A;  2L3G A;  1P2X A;  1SH5 A;  2RR8 A;  1VKA A;  4EDL A;  1QAG A;  3VP7 A;  2VZG B;  2HL8 A;  2VZI B;  4EDN A;  1MB8 A;  5L0O A;  5FMU A;  4DDP A;  2YRN A;  2WA7 A;  2R0O A;  4TXI A;  1WYO A;  1WYM A;  4EDM A;  2VZC A;  2HL9 A;  1V5K A;  1BHD A;  1PA7 A;  3JAR M;  2EQO A;  5A36 A;  2E9K A;  5A37 A;  2WA5 A;  2HKP A;  1WYR A;  2QJX A;  1AOA A;  2WE6 A;  1BKR A;  2EE7 A; 
#chains in the Genus database with same CATH homology
 1WJO A;  3HOC A;  3KMW B;  2D89 A;  1TJT A;  3F7P A;  2D86 A;  1WYP A;  2WFN A;  1P5S A;  1WYL A;  1WYN A;  2EYI A;  3HOP A;  5J8E A;  2D85 A;  1RT8 A;  4Q57 B;  2D88 A;  2R8U A;  3JAL M;  2QJZ A;  1AA2 A;  1WIX A;  3REP B;  1DXX A;  1PXY A;  3FER A;  3JAK M;  2VZD A;  5BVR A;  1WYQ A;  3KMU B;  2K2R A;  4Q59 A;  5A38 A;  4B7L A;  1UEG A;  2K3S A;  4Q58 A;  4TXK A;  2D87 A;  3KY9 A;  2JV9 A;  1H67 A;  2DK9 A;  1WKU A;  5A4B A;  3CO1 A;  3HOR A;  2WA6 A;  1UJO A;  1SH6 A;  2EYN A;  3I6X A;  2L3G A;  1P2X A;  1SH5 A;  2RR8 A;  1VKA A;  4EDL A;  1QAG A;  2VZG B;  2VZI B;  4EDN A;  1MB8 A;  5L0O A;  2YRN A;  2WA7 A;  2R0O A;  4TXI A;  1WYO A;  1WYM A;  4EDM A;  2VZC A;  1V5K A;  1BHD A;  1PA7 A;  3JAR M;  5A36 A;  2E9K A;  5A37 A;  2WA5 A;  1WYR A;  2QJX A;  1AOA A;  1BKR A;  2EE7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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