2VZGB

Crystal structure of the c-terminal calponin homology domain of alpha- parvin in complex with paxillin ld2 motif
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
126
structure length
126
Chain Sequence
RDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural analysis of the interactions between paxillin LD motifs and alpha-parvin.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Homo sapiens
molecule keywords Paxillin
total genus 44
structure length 126
sequence length 126
ec nomenclature
pdb deposition date 2008-08-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2vzgB00
4EDLA 2VZGB 2WA6A 2QJXA 3CO1A 5L0OA 3KY9A 3FERA 2QJZA 1BHDA 1SH5A 3KMWB 1H67A 1UJOA 3KMUB 3F7PA 1WYNA 4EDMA 3HORA 4Q57B 3JARM 2JV9A 1WYPA 2RR8A 3HOCA 1QAGA 2R8UA 5A4BA 3I6XA 2D85A 2K2RA 5J8EA 1WIXA 1WYLA 1P5SA 2WA5A 1PA7A 2D86A 4Q59A 2EE7A 1DXXA 1BKRA 2EYIA 3JAKM 2VZIB 1WKUA 5A38A 1V5KA 2YRNA 2R0OA 2D88A 1WYQA 2EYNA 5BVRA 2E9KA 4Q58A 1SH6A 5A36A 1UEGA 4TXKA 1RT8A 3HOPA 4TXIA 1WJOA 2D89A 1AOAA 2DK9A 4EDNA 2VZCA 5A37A 1AA2A 2L3GA 3JALM 1TJTA 1WYMA 1PXYA 2WA7A 3REPB 1P2XA 2K3SA 1MB8A 1WYRA 1WYOA 1VKAA 2VZDA 4B7LA 2WFNA 2D87A
chains in the Genus database with same CATH superfamily
4EDLA 2VZGB 2WA6A 5FMUA 4LVRA 2QJXA 3CO1A 5L0OA 3KY9A 4DDPA 3FERA 2QJZA 1BHDA 1SH5A 3KMWB 2WDTA 2VE7A 1H67A 1EUVA 1UJOA 3KMUB 4LVPA 3F7PA 1WYNA 4EDMA 3HORA 4Q57B 3JARM 2JV9A 1WYPA 2HL9A 2IGPA 2RR8A 3HOCA 1QAGA 2R8UA 2VE7C 5A4BA 5FMTA 3I6XA 2D85A 2K2RA 5J8EA 1WIXA 1WYLA 1P5SA 2WA5A 1PA7A 2D86A 4Q59A 2HL8A 2EE7A 1DXXA 1BKRA 2EYIA 3JAKM 2VZIB 1WKUA 5A38A 1V5KA 2YRNA 2R0OA 2D88A 1WYQA 2EYNA 5BVRA 2E9KA 2WE6A 4Q58A 1SH6A 5A36A 1UEGA 4TXKA 1RT8A 3HOPA 3EAYA 1WJOA 4TXIA 2D89A 1AOAA 2DK9A 4EDNA 2VZCA 5A37A 1AA2A 2L3GA 3JALM 1TJTA 1WYMA 1PXYA 2WA7A 3REPB 2EQOA 1P2XA 2K3SA 1MB8A 3VP7A 1WYRA 1WYOA 1VKAA 2VZDA 4B7LA 2WFNA 2D87A 2HKPA
chains in the Genus database with same CATH topology
4EDLA 2VZGB 2WA6A 2QJXA 3CO1A 5L0OA 3KY9A 3FERA 2QJZA 1BHDA 1SH5A 3KMWB 1H67A 1UJOA 3KMUB 3F7PA 1WYNA 4EDMA 3HORA 4Q57B 3JARM 2JV9A 1WYPA 2RR8A 3HOCA 1QAGA 2R8UA 5A4BA 3I6XA 2D85A 2K2RA 5J8EA 1WIXA 1WYLA 1P5SA 2WA5A 1PA7A 2D86A 4Q59A 2EE7A 1DXXA 1BKRA 2EYIA 3JAKM 2VZIB 1WKUA 5A38A 1V5KA 2YRNA 2R0OA 2D88A 1WYQA 2EYNA 5BVRA 2E9KA 4Q58A 1SH6A 5A36A 1UEGA 4TXKA 1RT8A 3HOPA 4TXIA 1WJOA 2D89A 1AOAA 2DK9A 4EDNA 2VZCA 5A37A 1AA2A 2L3GA 3JALM 1TJTA 1WYMA 1PXYA 2WA7A 3REPB 1P2XA 2K3SA 1MB8A 1WYRA 1WYOA 1VKAA 2VZDA 4B7LA 2WFNA 2D87A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EDL A;  2VZG B;  2WA6 A;  2QJX A;  3CO1 A;  5L0O A;  3KY9 A;  3FER A;  2QJZ A;  1BHD A;  1SH5 A;  3KMW B;  1H67 A;  1UJO A;  3KMU B;  3F7P A;  1WYN A;  4EDM A;  3HOR A;  4Q57 B;  3JAR M;  2JV9 A;  1WYP A;  2RR8 A;  3HOC A;  1QAG A;  2R8U A;  5A4B A;  3I6X A;  2D85 A;  2K2R A;  5J8E A;  1WIX A;  1WYL A;  1P5S A;  2WA5 A;  1PA7 A;  2D86 A;  4Q59 A;  2EE7 A;  1DXX A;  1BKR A;  2EYI A;  3JAK M;  2VZI B;  1WKU A;  5A38 A;  1V5K A;  2YRN A;  2R0O A;  2D88 A;  1WYQ A;  2EYN A;  5BVR A;  2E9K A;  4Q58 A;  1SH6 A;  5A36 A;  1UEG A;  4TXK A;  1RT8 A;  3HOP A;  4TXI A;  1WJO A;  2D89 A;  1AOA A;  2DK9 A;  4EDN A;  2VZC A;  5A37 A;  1AA2 A;  2L3G A;  3JAL M;  1TJT A;  1WYM A;  1PXY A;  2WA7 A;  3REP B;  1P2X A;  2K3S A;  1MB8 A;  1WYR A;  1WYO A;  1VKA A;  2VZD A;  4B7L A;  2WFN A;  2D87 A; 
#chains in the Genus database with same CATH topology
 4EDL A;  2VZG B;  2WA6 A;  5FMU A;  4LVR A;  2QJX A;  3CO1 A;  5L0O A;  3KY9 A;  4DDP A;  3FER A;  2QJZ A;  1BHD A;  1SH5 A;  3KMW B;  2WDT A;  2VE7 A;  1H67 A;  1EUV A;  1UJO A;  3KMU B;  4LVP A;  3F7P A;  1WYN A;  4EDM A;  3HOR A;  4Q57 B;  3JAR M;  2JV9 A;  1WYP A;  2HL9 A;  2IGP A;  2RR8 A;  3HOC A;  1QAG A;  2R8U A;  2VE7 C;  5A4B A;  5FMT A;  3I6X A;  2D85 A;  2K2R A;  5J8E A;  1WIX A;  1WYL A;  1P5S A;  2WA5 A;  1PA7 A;  2D86 A;  4Q59 A;  2HL8 A;  2EE7 A;  1DXX A;  1BKR A;  2EYI A;  3JAK M;  2VZI B;  1WKU A;  5A38 A;  1V5K A;  2YRN A;  2R0O A;  2D88 A;  1WYQ A;  2EYN A;  5BVR A;  2E9K A;  2WE6 A;  4Q58 A;  1SH6 A;  5A36 A;  1UEG A;  4TXK A;  1RT8 A;  3HOP A;  3EAY A;  1WJO A;  4TXI A;  2D89 A;  1AOA A;  2DK9 A;  4EDN A;  2VZC A;  5A37 A;  1AA2 A;  2L3G A;  3JAL M;  1TJT A;  1WYM A;  1PXY A;  2WA7 A;  3REP B;  2EQO A;  1P2X A;  2K3S A;  1MB8 A;  3VP7 A;  1WYR A;  1WYO A;  1VKA A;  2VZD A;  4B7L A;  2WFN A;  2D87 A;  2HKP A; 
#chains in the Genus database with same CATH homology
 4EDL A;  2VZG B;  2WA6 A;  2QJX A;  3CO1 A;  5L0O A;  3KY9 A;  3FER A;  2QJZ A;  1BHD A;  1SH5 A;  3KMW B;  1H67 A;  1UJO A;  3KMU B;  3F7P A;  1WYN A;  4EDM A;  3HOR A;  4Q57 B;  3JAR M;  2JV9 A;  1WYP A;  2RR8 A;  3HOC A;  1QAG A;  2R8U A;  5A4B A;  3I6X A;  2D85 A;  2K2R A;  5J8E A;  1WIX A;  1WYL A;  1P5S A;  2WA5 A;  1PA7 A;  2D86 A;  4Q59 A;  2EE7 A;  1DXX A;  1BKR A;  2EYI A;  3JAK M;  2VZI B;  1WKU A;  5A38 A;  1V5K A;  2YRN A;  2R0O A;  2D88 A;  1WYQ A;  2EYN A;  5BVR A;  2E9K A;  4Q58 A;  1SH6 A;  5A36 A;  1UEG A;  4TXK A;  1RT8 A;  3HOP A;  4TXI A;  1WJO A;  2D89 A;  1AOA A;  2DK9 A;  4EDN A;  2VZC A;  5A37 A;  1AA2 A;  2L3G A;  3JAL M;  1TJT A;  1WYM A;  1PXY A;  2WA7 A;  3REP B;  1P2X A;  2K3S A;  1MB8 A;  1WYR A;  1WYO A;  1VKA A;  2VZD A;  4B7L A;  2WFN A;  2D87 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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