2VZIB

Crystal structure of the c-terminal calponin homology domain of alpha- parvin in complex with paxillin ld4 motif
Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
126
structure length
126
Chain Sequence
RDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
source organism Homo sapiens
publication title Structural analysis of the interactions between paxillin LD motifs and alpha-parvin.
pubmed doi rcsb
molecule keywords Paxillin,Paxillin
total genus 47
structure length 126
sequence length 126
ec nomenclature
pdb deposition date 2008-08-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2vziB00
3F7PA 1WIXA 4TXIA 1P5SA 3JAKM 1H67A 1V5KA 2K2RA 1WYLA 4B7LA 5A38A 3KMWB 4Q59A 1P2XA 2VZDA 4EDMA 2D89A 5A4BA 2R8UA 4Q57B 1BKRA 3KY9A 2D88A 2JV9A 2DK9A 2EE7A 2L3GA 4Q58A 2WA7A 1WYQA 1SH5A 2YRNA 2WA6A 5A37A 1DXXA 2K3SA 3JALM 1UEGA 1WKUA 3JARM 1QAGA 1PA7A 3HOCA 2VZCA 3HOPA 2D85A 2E9KA 3HORA 5A36A 3I6XA 2D86A 2D87A 1RT8A 1TJTA 2R0OA 2QJZA 3CO1A 5J8EA 2RR8A 3REPB 1SH6A 2EYNA 1WYMA 1WYRA 1WYPA 1UJOA 1VKAA 4EDLA 1AA2A 3KMUB 1BHDA 2WFNA 5L0OA 2VZIB 2WA5A 4EDNA 5BVRA 1WYOA 1WJOA 4TXKA 2QJXA 1AOAA 1WYNA 1PXYA 2EYIA 3FERA 1MB8A 2VZGB
chains in the Genus database with same CATH superfamily
3F7PA 1WIXA 4TXIA 1P5SA 3JAKM 1H67A 1V5KA 2K2RA 2VE7C 1WYLA 2IGPA 4B7LA 4DDPA 5A38A 3KMWB 4Q59A 1P2XA 2VE7A 2HKPA 2VZDA 4EDMA 2HL9A 2EQOA 2D89A 5A4BA 4LVPA 2R8UA 4Q57B 1BKRA 2D88A 3KY9A 2JV9A 2DK9A 2EE7A 2L3GA 3VP7A 1EUVA 4Q58A 2WA7A 1WYQA 1SH5A 2YRNA 2WA6A 5A37A 1DXXA 4LVRA 2K3SA 3JALM 1UEGA 1WKUA 3JARM 1QAGA 1PA7A 2HL8A 3HOCA 3EAYA 2VZCA 3HOPA 2D85A 2E9KA 3HORA 5A36A 3I6XA 2D86A 2D87A 1RT8A 1TJTA 5FMUA 2R0OA 2QJZA 3CO1A 5J8EA 2RR8A 3REPB 1SH6A 2EYNA 2WE6A 1WYMA 1WYRA 1WYPA 1UJOA 1VKAA 5FMTA 4EDLA 1AA2A 3KMUB 1BHDA 2WFNA 5L0OA 2VZIB 2WA5A 4EDNA 5BVRA 1WYOA 1WJOA 4TXKA 2QJXA 1AOAA 1WYNA 1PXYA 2EYIA 3FERA 1MB8A 2VZGB 2WDTA
chains in the Genus database with same CATH topology
3F7PA 1WIXA 4TXIA 1P5SA 3JAKM 1H67A 1V5KA 2K2RA 1WYLA 4B7LA 5A38A 3KMWB 4Q59A 1P2XA 2VZDA 4EDMA 2D89A 5A4BA 2R8UA 4Q57B 1BKRA 3KY9A 2D88A 2JV9A 2DK9A 2EE7A 2L3GA 4Q58A 2WA7A 1WYQA 1SH5A 2YRNA 2WA6A 5A37A 1DXXA 2K3SA 3JALM 1UEGA 1WKUA 3JARM 1QAGA 1PA7A 3HOCA 2VZCA 3HOPA 2D85A 2E9KA 3HORA 5A36A 3I6XA 2D86A 2D87A 1RT8A 1TJTA 2R0OA 2QJZA 3CO1A 5J8EA 2RR8A 3REPB 1SH6A 2EYNA 1WYMA 1WYRA 1WYPA 1UJOA 1VKAA 4EDLA 1AA2A 3KMUB 1BHDA 2WFNA 5L0OA 2VZIB 2WA5A 4EDNA 5BVRA 1WYOA 1WJOA 4TXKA 2QJXA 1AOAA 1WYNA 1PXYA 2EYIA 3FERA 1MB8A 2VZGB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F7P A;  1WIX A;  4TXI A;  1P5S A;  3JAK M;  1H67 A;  1V5K A;  2K2R A;  1WYL A;  4B7L A;  5A38 A;  3KMW B;  4Q59 A;  1P2X A;  2VZD A;  4EDM A;  2D89 A;  5A4B A;  2R8U A;  4Q57 B;  1BKR A;  3KY9 A;  2D88 A;  2JV9 A;  2DK9 A;  2EE7 A;  2L3G A;  4Q58 A;  2WA7 A;  1WYQ A;  1SH5 A;  2YRN A;  2WA6 A;  5A37 A;  1DXX A;  2K3S A;  3JAL M;  1UEG A;  1WKU A;  3JAR M;  1QAG A;  1PA7 A;  3HOC A;  2VZC A;  3HOP A;  2D85 A;  2E9K A;  3HOR A;  5A36 A;  3I6X A;  2D86 A;  2D87 A;  1RT8 A;  1TJT A;  2R0O A;  2QJZ A;  3CO1 A;  5J8E A;  2RR8 A;  3REP B;  1SH6 A;  2EYN A;  1WYM A;  1WYR A;  1WYP A;  1UJO A;  1VKA A;  4EDL A;  1AA2 A;  3KMU B;  1BHD A;  2WFN A;  5L0O A;  2VZI B;  2WA5 A;  4EDN A;  5BVR A;  1WYO A;  1WJO A;  4TXK A;  2QJX A;  1AOA A;  1WYN A;  1PXY A;  2EYI A;  3FER A;  1MB8 A;  2VZG B; 
#chains in the Genus database with same CATH topology
 3F7P A;  1WIX A;  4TXI A;  1P5S A;  3JAK M;  1H67 A;  1V5K A;  2K2R A;  2VE7 C;  1WYL A;  2IGP A;  4B7L A;  4DDP A;  5A38 A;  3KMW B;  4Q59 A;  1P2X A;  2VE7 A;  2HKP A;  2VZD A;  4EDM A;  2HL9 A;  2EQO A;  2D89 A;  5A4B A;  4LVP A;  2R8U A;  4Q57 B;  1BKR A;  2D88 A;  3KY9 A;  2JV9 A;  2DK9 A;  2EE7 A;  2L3G A;  3VP7 A;  1EUV A;  4Q58 A;  2WA7 A;  1WYQ A;  1SH5 A;  2YRN A;  2WA6 A;  5A37 A;  1DXX A;  4LVR A;  2K3S A;  3JAL M;  1UEG A;  1WKU A;  3JAR M;  1QAG A;  1PA7 A;  2HL8 A;  3HOC A;  3EAY A;  2VZC A;  3HOP A;  2D85 A;  2E9K A;  3HOR A;  5A36 A;  3I6X A;  2D86 A;  2D87 A;  1RT8 A;  1TJT A;  5FMU A;  2R0O A;  2QJZ A;  3CO1 A;  5J8E A;  2RR8 A;  3REP B;  1SH6 A;  2EYN A;  2WE6 A;  1WYM A;  1WYR A;  1WYP A;  1UJO A;  1VKA A;  5FMT A;  4EDL A;  1AA2 A;  3KMU B;  1BHD A;  2WFN A;  5L0O A;  2VZI B;  2WA5 A;  4EDN A;  5BVR A;  1WYO A;  1WJO A;  4TXK A;  2QJX A;  1AOA A;  1WYN A;  1PXY A;  2EYI A;  3FER A;  1MB8 A;  2VZG B;  2WDT A; 
#chains in the Genus database with same CATH homology
 3F7P A;  1WIX A;  4TXI A;  1P5S A;  3JAK M;  1H67 A;  1V5K A;  2K2R A;  1WYL A;  4B7L A;  5A38 A;  3KMW B;  4Q59 A;  1P2X A;  2VZD A;  4EDM A;  2D89 A;  5A4B A;  2R8U A;  4Q57 B;  1BKR A;  3KY9 A;  2D88 A;  2JV9 A;  2DK9 A;  2EE7 A;  2L3G A;  4Q58 A;  2WA7 A;  1WYQ A;  1SH5 A;  2YRN A;  2WA6 A;  5A37 A;  1DXX A;  2K3S A;  3JAL M;  1UEG A;  1WKU A;  3JAR M;  1QAG A;  1PA7 A;  3HOC A;  2VZC A;  3HOP A;  2D85 A;  2E9K A;  3HOR A;  5A36 A;  3I6X A;  2D86 A;  2D87 A;  1RT8 A;  1TJT A;  2R0O A;  2QJZ A;  3CO1 A;  5J8E A;  2RR8 A;  3REP B;  1SH6 A;  2EYN A;  1WYM A;  1WYR A;  1WYP A;  1UJO A;  1VKA A;  4EDL A;  1AA2 A;  3KMU B;  1BHD A;  2WFN A;  5L0O A;  2VZI B;  2WA5 A;  4EDN A;  5BVR A;  1WYO A;  1WJO A;  4TXK A;  2QJX A;  1AOA A;  1WYN A;  1PXY A;  2EYI A;  3FER A;  1MB8 A;  2VZG B; 
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