3CO1A

Crystal structure of microtubule binding domain of human eb3
Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
132
structure length
132
Chain Sequence
GSMAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH5 (101-117)TI1 (6-9)AH1 (17-28)AH2 (42-51)TI2 (38-41)TI4 (125-128)AH4 (93-98)EMPTYTI5 (126-129)AH3 (68-85)3H2 (58-60)TI3 (62-65)TII1 (52-55)3H1 (35-38)Updating...
connected with : NaN
molecule tags Protein binding
source organism Homo sapiens
publication title Mammalian end binding proteins control persistent microtubule growth.
pubmed doi rcsb
molecule keywords Microtubule-associated protein RP/EB family member 3
total genus 39
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2008-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 3co1A00
2JV9A 4B7LA 1TJTA 1SH5A 4TXKA 3I6XA 1WYQA 2L3GA 3JARM 4EDLA 1MB8A 5L0OA 2D88A 2WA7A 3JAKM 1P2XA 1PA7A 1SH6A 3HORA 1WYNA 2R8UA 1WKUA 1WYLA 4EDNA 2D85A 2VZCA 3FERA 2D89A 1VKAA 2VZGB 4Q58A 1WJOA 3KMWB 1H67A 1BHDA 1BKRA 2EYIA 2QJXA 2DK9A 1WIXA 2K2RA 2WA6A 2QJZA 1QAGA 1WYPA 1AA2A 2VZIB 2E9KA 2WA5A 2WFNA 4Q59A 2EYNA 1DXXA 3CO1A 2R0OA 1RT8A 1UJOA 3KMUB 2K3SA 1AOAA 3HOPA 1WYOA 4Q57B 5J8EA 1WYRA 2RR8A 5BVRA 2EE7A 3F7PA 1WYMA 4EDMA 3JALM 2YRNA 2D86A 2D87A 1P5SA 3KY9A 2VZDA 5A4BA 3REPB 4TXIA 5A36A 5A37A 1PXYA 1UEGA 1V5KA 5A38A 3HOCA
chains in the Genus database with same CATH superfamily
2JV9A 4B7LA 1TJTA 3EAYA 1SH5A 4TXKA 3I6XA 1WYQA 2L3GA 3JARM 4EDLA 1MB8A 2IGPA 5L0OA 2WDTA 2D88A 2WA7A 3JAKM 4DDPA 1P2XA 1PA7A 1SH6A 3HORA 1WYNA 2R8UA 1WKUA 1WYLA 4EDNA 2D85A 2WE6A 2VZCA 3FERA 2HL8A 2D89A 1EUVA 3VP7A 1VKAA 2EQOA 2VZGB 4Q58A 1WJOA 3KMWB 1H67A 1BHDA 2HL9A 4LVRA 1BKRA 2EYIA 2QJXA 2DK9A 1WIXA 2K2RA 2WA6A 2HKPA 2QJZA 1QAGA 1WYPA 1AA2A 2VZIB 2E9KA 2WA5A 2WFNA 4Q59A 2EYNA 2VE7A 1DXXA 3CO1A 2R0OA 1RT8A 1UJOA 3KMUB 2K3SA 1AOAA 3HOPA 1WYOA 4Q57B 5J8EA 1WYRA 2RR8A 5BVRA 2EE7A 3F7PA 1WYMA 4EDMA 2VE7C 3JALM 2YRNA 5FMTA 4LVPA 2D86A 2D87A 5FMUA 1P5SA 3KY9A 2VZDA 5A4BA 3REPB 4TXIA 5A36A 5A37A 1PXYA 1UEGA 1V5KA 5A38A 3HOCA
chains in the Genus database with same CATH topology
2JV9A 4B7LA 1TJTA 1SH5A 4TXKA 3I6XA 1WYQA 2L3GA 3JARM 4EDLA 1MB8A 5L0OA 2D88A 2WA7A 3JAKM 1P2XA 1PA7A 1SH6A 3HORA 1WYNA 2R8UA 1WKUA 1WYLA 4EDNA 2D85A 2VZCA 3FERA 2D89A 1VKAA 2VZGB 4Q58A 1WJOA 3KMWB 1H67A 1BHDA 1BKRA 2EYIA 2QJXA 2DK9A 1WIXA 2K2RA 2WA6A 2QJZA 1QAGA 1WYPA 1AA2A 2VZIB 2E9KA 2WA5A 2WFNA 4Q59A 2EYNA 1DXXA 3CO1A 2R0OA 1RT8A 1UJOA 3KMUB 2K3SA 1AOAA 3HOPA 1WYOA 4Q57B 5J8EA 1WYRA 2RR8A 5BVRA 2EE7A 3F7PA 1WYMA 4EDMA 3JALM 2YRNA 2D86A 2D87A 1P5SA 3KY9A 2VZDA 5A4BA 3REPB 4TXIA 5A36A 5A37A 1PXYA 1UEGA 1V5KA 5A38A 3HOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JV9 A;  4B7L A;  1TJT A;  1SH5 A;  4TXK A;  3I6X A;  1WYQ A;  2L3G A;  3JAR M;  4EDL A;  1MB8 A;  5L0O A;  2D88 A;  2WA7 A;  3JAK M;  1P2X A;  1PA7 A;  1SH6 A;  3HOR A;  1WYN A;  2R8U A;  1WKU A;  1WYL A;  4EDN A;  2D85 A;  2VZC A;  3FER A;  2D89 A;  1VKA A;  2VZG B;  4Q58 A;  1WJO A;  3KMW B;  1H67 A;  1BHD A;  1BKR A;  2EYI A;  2QJX A;  2DK9 A;  1WIX A;  2K2R A;  2WA6 A;  2QJZ A;  1QAG A;  1WYP A;  1AA2 A;  2VZI B;  2E9K A;  2WA5 A;  2WFN A;  4Q59 A;  2EYN A;  1DXX A;  3CO1 A;  2R0O A;  1RT8 A;  1UJO A;  3KMU B;  2K3S A;  1AOA A;  3HOP A;  1WYO A;  4Q57 B;  5J8E A;  1WYR A;  2RR8 A;  5BVR A;  2EE7 A;  3F7P A;  1WYM A;  4EDM A;  3JAL M;  2YRN A;  2D86 A;  2D87 A;  1P5S A;  3KY9 A;  2VZD A;  5A4B A;  3REP B;  4TXI A;  5A36 A;  5A37 A;  1PXY A;  1UEG A;  1V5K A;  5A38 A;  3HOC A; 
#chains in the Genus database with same CATH topology
 2JV9 A;  4B7L A;  1TJT A;  3EAY A;  1SH5 A;  4TXK A;  3I6X A;  1WYQ A;  2L3G A;  3JAR M;  4EDL A;  1MB8 A;  2IGP A;  5L0O A;  2WDT A;  2D88 A;  2WA7 A;  3JAK M;  4DDP A;  1P2X A;  1PA7 A;  1SH6 A;  3HOR A;  1WYN A;  2R8U A;  1WKU A;  1WYL A;  4EDN A;  2D85 A;  2WE6 A;  2VZC A;  3FER A;  2HL8 A;  2D89 A;  1EUV A;  3VP7 A;  1VKA A;  2EQO A;  2VZG B;  4Q58 A;  1WJO A;  3KMW B;  1H67 A;  1BHD A;  2HL9 A;  4LVR A;  1BKR A;  2EYI A;  2QJX A;  2DK9 A;  1WIX A;  2K2R A;  2WA6 A;  2HKP A;  2QJZ A;  1QAG A;  1WYP A;  1AA2 A;  2VZI B;  2E9K A;  2WA5 A;  2WFN A;  4Q59 A;  2EYN A;  2VE7 A;  1DXX A;  3CO1 A;  2R0O A;  1RT8 A;  1UJO A;  3KMU B;  2K3S A;  1AOA A;  3HOP A;  1WYO A;  4Q57 B;  5J8E A;  1WYR A;  2RR8 A;  5BVR A;  2EE7 A;  3F7P A;  1WYM A;  4EDM A;  2VE7 C;  3JAL M;  2YRN A;  5FMT A;  4LVP A;  2D86 A;  2D87 A;  5FMU A;  1P5S A;  3KY9 A;  2VZD A;  5A4B A;  3REP B;  4TXI A;  5A36 A;  5A37 A;  1PXY A;  1UEG A;  1V5K A;  5A38 A;  3HOC A; 
#chains in the Genus database with same CATH homology
 2JV9 A;  4B7L A;  1TJT A;  1SH5 A;  4TXK A;  3I6X A;  1WYQ A;  2L3G A;  3JAR M;  4EDL A;  1MB8 A;  5L0O A;  2D88 A;  2WA7 A;  3JAK M;  1P2X A;  1PA7 A;  1SH6 A;  3HOR A;  1WYN A;  2R8U A;  1WKU A;  1WYL A;  4EDN A;  2D85 A;  2VZC A;  3FER A;  2D89 A;  1VKA A;  2VZG B;  4Q58 A;  1WJO A;  3KMW B;  1H67 A;  1BHD A;  1BKR A;  2EYI A;  2QJX A;  2DK9 A;  1WIX A;  2K2R A;  2WA6 A;  2QJZ A;  1QAG A;  1WYP A;  1AA2 A;  2VZI B;  2E9K A;  2WA5 A;  2WFN A;  4Q59 A;  2EYN A;  1DXX A;  3CO1 A;  2R0O A;  1RT8 A;  1UJO A;  3KMU B;  2K3S A;  1AOA A;  3HOP A;  1WYO A;  4Q57 B;  5J8E A;  1WYR A;  2RR8 A;  5BVR A;  2EE7 A;  3F7P A;  1WYM A;  4EDM A;  3JAL M;  2YRN A;  2D86 A;  2D87 A;  1P5S A;  3KY9 A;  2VZD A;  5A4B A;  3REP B;  4TXI A;  5A36 A;  5A37 A;  1PXY A;  1UEG A;  1V5K A;  5A38 A;  3HOC A; 
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similar chains in the pdb database (?% sequence similarity)

 
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