3KMWB

Crystal structure of the ilk/alpha-parvin core complex (mgatp)
Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
124
structure length
124
Chain Sequence
AFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
source organism Homo sapiens
publication title The pseudoactive site of ILK is essential for its binding to alpha-Parvin and localization to focal adhesions.
pubmed doi rcsb
molecule keywords Integrin-linked kinase
total genus 40
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 3kmwB00
2VZCA 2L3GA 1RT8A 2D87A 2QJZA 4Q58A 2E9KA 1QAGA 2JV9A 2D86A 2R8UA 1WYQA 4TXIA 5BVRA 3FERA 2K2RA 2D88A 3HORA 2D85A 2EYIA 2D89A 4EDNA 1WYMA 1BHDA 2VZIB 2QJXA 1AA2A 1P5SA 3JALM 4TXKA 1WYOA 2VZDA 3KMWB 5A37A 2RR8A 2EE7A 5A4BA 1PXYA 1P2XA 5A38A 3HOPA 1UEGA 3JAKM 5A36A 4Q57B 1H67A 1WYNA 3HOCA 1DXXA 1WYRA 1BKRA 3KMUB 1WKUA 2YRNA 3REPB 1TJTA 3CO1A 5J8EA 1AOAA 2K3SA 4B7LA 1SH6A 1VKAA 5L0OA 1PA7A 4EDMA 1V5KA 1WYLA 3JARM 1WIXA 2WFNA 1WYPA 2EYNA 4EDLA 1MB8A 2R0OA 2VZGB 2WA6A 4Q59A 2WA5A 1SH5A 3KY9A 3F7PA 2DK9A 1UJOA 1WJOA 2WA7A 3I6XA
chains in the Genus database with same CATH superfamily
2VZCA 4LVPA 2L3GA 1RT8A 2D87A 2QJZA 4Q58A 2E9KA 2HL9A 1QAGA 2JV9A 2D86A 2R8UA 1WYQA 4TXIA 1EUVA 5BVRA 2IGPA 3FERA 2K2RA 2D88A 4LVRA 3EAYA 3HORA 2D85A 2EYIA 2D89A 4EDNA 2VE7A 1WYMA 1BHDA 2VZIB 2QJXA 1AA2A 1P5SA 3JALM 4TXKA 1WYOA 2VZDA 3KMWB 2WDTA 4DDPA 5A37A 2RR8A 2EE7A 5A4BA 1PXYA 1P2XA 5A38A 3HOPA 2VE7C 1UEGA 3VP7A 3JAKM 5A36A 4Q57B 1H67A 1WYNA 3HOCA 1DXXA 2HKPA 2HL8A 1WYRA 1BKRA 3KMUB 1WKUA 2YRNA 5FMTA 3REPB 1TJTA 3CO1A 5J8EA 1AOAA 2WE6A 2K3SA 4B7LA 1SH6A 1VKAA 5L0OA 1PA7A 4EDMA 1V5KA 5FMUA 1WYLA 3JARM 1WIXA 2WFNA 1WYPA 2EYNA 4EDLA 1MB8A 2R0OA 2VZGB 2WA6A 4Q59A 2WA5A 1SH5A 3KY9A 2EQOA 3F7PA 2DK9A 1UJOA 1WJOA 2WA7A 3I6XA
chains in the Genus database with same CATH topology
2VZCA 2L3GA 1RT8A 2D87A 2QJZA 4Q58A 2E9KA 1QAGA 2JV9A 2D86A 2R8UA 1WYQA 4TXIA 5BVRA 3FERA 2K2RA 2D88A 3HORA 2D85A 2EYIA 2D89A 4EDNA 1WYMA 1BHDA 2VZIB 2QJXA 1AA2A 1P5SA 3JALM 4TXKA 1WYOA 2VZDA 3KMWB 5A37A 2RR8A 2EE7A 5A4BA 1PXYA 1P2XA 5A38A 3HOPA 1UEGA 3JAKM 5A36A 4Q57B 1H67A 1WYNA 3HOCA 1DXXA 1WYRA 1BKRA 3KMUB 1WKUA 2YRNA 3REPB 1TJTA 3CO1A 5J8EA 1AOAA 2K3SA 4B7LA 1SH6A 1VKAA 5L0OA 1PA7A 4EDMA 1V5KA 1WYLA 3JARM 1WIXA 2WFNA 1WYPA 2EYNA 4EDLA 1MB8A 2R0OA 2VZGB 2WA6A 4Q59A 2WA5A 1SH5A 3KY9A 3F7PA 2DK9A 1UJOA 1WJOA 2WA7A 3I6XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VZC A;  2L3G A;  1RT8 A;  2D87 A;  2QJZ A;  4Q58 A;  2E9K A;  1QAG A;  2JV9 A;  2D86 A;  2R8U A;  1WYQ A;  4TXI A;  5BVR A;  3FER A;  2K2R A;  2D88 A;  3HOR A;  2D85 A;  2EYI A;  2D89 A;  4EDN A;  1WYM A;  1BHD A;  2VZI B;  2QJX A;  1AA2 A;  1P5S A;  3JAL M;  4TXK A;  1WYO A;  2VZD A;  3KMW B;  5A37 A;  2RR8 A;  2EE7 A;  5A4B A;  1PXY A;  1P2X A;  5A38 A;  3HOP A;  1UEG A;  3JAK M;  5A36 A;  4Q57 B;  1H67 A;  1WYN A;  3HOC A;  1DXX A;  1WYR A;  1BKR A;  3KMU B;  1WKU A;  2YRN A;  3REP B;  1TJT A;  3CO1 A;  5J8E A;  1AOA A;  2K3S A;  4B7L A;  1SH6 A;  1VKA A;  5L0O A;  1PA7 A;  4EDM A;  1V5K A;  1WYL A;  3JAR M;  1WIX A;  2WFN A;  1WYP A;  2EYN A;  4EDL A;  1MB8 A;  2R0O A;  2VZG B;  2WA6 A;  4Q59 A;  2WA5 A;  1SH5 A;  3KY9 A;  3F7P A;  2DK9 A;  1UJO A;  1WJO A;  2WA7 A;  3I6X A; 
#chains in the Genus database with same CATH topology
 2VZC A;  4LVP A;  2L3G A;  1RT8 A;  2D87 A;  2QJZ A;  4Q58 A;  2E9K A;  2HL9 A;  1QAG A;  2JV9 A;  2D86 A;  2R8U A;  1WYQ A;  4TXI A;  1EUV A;  5BVR A;  2IGP A;  3FER A;  2K2R A;  2D88 A;  4LVR A;  3EAY A;  3HOR A;  2D85 A;  2EYI A;  2D89 A;  4EDN A;  2VE7 A;  1WYM A;  1BHD A;  2VZI B;  2QJX A;  1AA2 A;  1P5S A;  3JAL M;  4TXK A;  1WYO A;  2VZD A;  3KMW B;  2WDT A;  4DDP A;  5A37 A;  2RR8 A;  2EE7 A;  5A4B A;  1PXY A;  1P2X A;  5A38 A;  3HOP A;  2VE7 C;  1UEG A;  3VP7 A;  3JAK M;  5A36 A;  4Q57 B;  1H67 A;  1WYN A;  3HOC A;  1DXX A;  2HKP A;  2HL8 A;  1WYR A;  1BKR A;  3KMU B;  1WKU A;  2YRN A;  5FMT A;  3REP B;  1TJT A;  3CO1 A;  5J8E A;  1AOA A;  2WE6 A;  2K3S A;  4B7L A;  1SH6 A;  1VKA A;  5L0O A;  1PA7 A;  4EDM A;  1V5K A;  5FMU A;  1WYL A;  3JAR M;  1WIX A;  2WFN A;  1WYP A;  2EYN A;  4EDL A;  1MB8 A;  2R0O A;  2VZG B;  2WA6 A;  4Q59 A;  2WA5 A;  1SH5 A;  3KY9 A;  2EQO A;  3F7P A;  2DK9 A;  1UJO A;  1WJO A;  2WA7 A;  3I6X A; 
#chains in the Genus database with same CATH homology
 2VZC A;  2L3G A;  1RT8 A;  2D87 A;  2QJZ A;  4Q58 A;  2E9K A;  1QAG A;  2JV9 A;  2D86 A;  2R8U A;  1WYQ A;  4TXI A;  5BVR A;  3FER A;  2K2R A;  2D88 A;  3HOR A;  2D85 A;  2EYI A;  2D89 A;  4EDN A;  1WYM A;  1BHD A;  2VZI B;  2QJX A;  1AA2 A;  1P5S A;  3JAL M;  4TXK A;  1WYO A;  2VZD A;  3KMW B;  5A37 A;  2RR8 A;  2EE7 A;  5A4B A;  1PXY A;  1P2X A;  5A38 A;  3HOP A;  1UEG A;  3JAK M;  5A36 A;  4Q57 B;  1H67 A;  1WYN A;  3HOC A;  1DXX A;  1WYR A;  1BKR A;  3KMU B;  1WKU A;  2YRN A;  3REP B;  1TJT A;  3CO1 A;  5J8E A;  1AOA A;  2K3S A;  4B7L A;  1SH6 A;  1VKA A;  5L0O A;  1PA7 A;  4EDM A;  1V5K A;  1WYL A;  3JAR M;  1WIX A;  2WFN A;  1WYP A;  2EYN A;  4EDL A;  1MB8 A;  2R0O A;  2VZG B;  2WA6 A;  4Q59 A;  2WA5 A;  1SH5 A;  3KY9 A;  3F7P A;  2DK9 A;  1UJO A;  1WJO A;  2WA7 A;  3I6X A; 
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