3VP7A

Crystal structure of the beta-alpha repeated, autophagy-specific (bara) domain of vps30/atg6
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
219
structure length
166
Chain Sequence
INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMDWLILPVYYDETKFDKSLETTLEIISEITRQLSTIASSLELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNLLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of the novel C-terminal domain of VPS30/ATG6 and its specific role in autophagy
rcsb
molecule tags Protein transport
source organism Saccharomyces cerevisiae
molecule keywords Vacuolar protein sorting-associated protein 30
total genus 52
structure length 166
sequence length 219
ec nomenclature
pdb deposition date 2012-02-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.40 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 3vp7A00
3VP7A 4DDPA
chains in the Genus database with same CATH superfamily
4LVPA 5J8EA 3KMUB 2VZCA 2JV9A 2VE7C 3JALM 2E9KA 1WYOA 2K3SA 1RT8A 1TJTA 4EDMA 1MB8A 5L0OA 4LVRA 3HOCA 2RR8A 3HOPA 2L3GA 1AOAA 2DK9A 3REPB 5A4BA 1PA7A 4DDPA 5A37A 5FMTA 2D89A 2HL8A 2QJXA 4Q59A 2EYIA 2EYNA 3KMWB 2WA7A 1QAGA 1UEGA 2R8UA 2D85A 4B7LA 1WYPA 3HORA 1VKAA 1WJOA 1WYMA 5A38A 4Q57B 1SH6A 3EAYA 5FMUA 1WYQA 2EE7A 5BVRA 1EUVA 4Q58A 1BKRA 1SH5A 1WYRA 2K2RA 1H67A 3JARM 1P5SA 1UJOA 5A36A 1P2XA 1BHDA 1AA2A 3F7PA 1WKUA 4TXIA 3VP7A 1V5KA 2D88A 2WFNA 2WDTA 4TXKA 1WYNA 1WIXA 2HKPA 2HL9A 3I6XA 2WA6A 2WE6A 2QJZA 2VZGB 4EDLA 3FERA 2VZDA 2VE7A 2WA5A 2D87A 1DXXA 1PXYA 2VZIB 2IGPA 3CO1A 2YRNA 2EQOA 2D86A 4EDNA 2R0OA 3JAKM 3KY9A 1WYLA
chains in the Genus database with same CATH topology
2VE7C 2HL8A 2WE6A 2HKPA 2EQOA 2VE7A 4LVPA 5FMTA 3EAYA 4LVRA 2HL9A 3VP7A 5FMUA 4DDPA 2WDTA 2IGPA 1EUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VP7 A;  4DDP A; 
#chains in the Genus database with same CATH topology
 4LVP A;  5J8E A;  3KMU B;  2VZC A;  2JV9 A;  2VE7 C;  3JAL M;  2E9K A;  1WYO A;  2K3S A;  1RT8 A;  1TJT A;  4EDM A;  1MB8 A;  5L0O A;  4LVR A;  3HOC A;  2RR8 A;  3HOP A;  2L3G A;  1AOA A;  2DK9 A;  3REP B;  5A4B A;  1PA7 A;  4DDP A;  5A37 A;  5FMT A;  2D89 A;  2HL8 A;  2QJX A;  4Q59 A;  2EYI A;  2EYN A;  3KMW B;  2WA7 A;  1QAG A;  1UEG A;  2R8U A;  2D85 A;  4B7L A;  1WYP A;  3HOR A;  1VKA A;  1WJO A;  1WYM A;  5A38 A;  4Q57 B;  1SH6 A;  3EAY A;  5FMU A;  1WYQ A;  2EE7 A;  5BVR A;  1EUV A;  4Q58 A;  1BKR A;  1SH5 A;  1WYR A;  2K2R A;  1H67 A;  3JAR M;  1P5S A;  1UJO A;  5A36 A;  1P2X A;  1BHD A;  1AA2 A;  3F7P A;  1WKU A;  4TXI A;  3VP7 A;  1V5K A;  2D88 A;  2WFN A;  2WDT A;  4TXK A;  1WYN A;  1WIX A;  2HKP A;  2HL9 A;  3I6X A;  2WA6 A;  2WE6 A;  2QJZ A;  2VZG B;  4EDL A;  3FER A;  2VZD A;  2VE7 A;  2WA5 A;  2D87 A;  1DXX A;  1PXY A;  2VZI B;  2IGP A;  3CO1 A;  2YRN A;  2EQO A;  2D86 A;  4EDN A;  2R0O A;  3JAK M;  3KY9 A;  1WYL A; 
#chains in the Genus database with same CATH homology
 2VE7 C;  2HL8 A;  2WE6 A;  2HKP A;  2EQO A;  2VE7 A;  4LVP A;  5FMT A;  3EAY A;  4LVR A;  2HL9 A;  3VP7 A;  5FMU A;  4DDP A;  2WDT A;  2IGP A;  1EUV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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