3VP7 | Genus

Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	52
sequence length	219
structure length	166
Chain Sequence	INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMDWLILPVYYDETKFDKSLETTLEIISEITRQLSTIASSLELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNLLS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 166 atoms

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166 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Protein transport
source organism	Saccharomyces cerevisiae
publication title	Structure of the novel C-terminal domain of VPS30/ATG6 and its specific role in autophagy rcsb
molecule keywords	Vacuolar protein sorting-associated protein 30
total genus	52
structure length	166
sequence length	219
ec nomenclature
pdb deposition date	2012-02-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.418.40	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin; domain 1	Actin-binding Protein, T-fimbrin; domain 1	3vp7A00

4DDPA 3VP7A
chains in the Genus database with same CATH superfamily

2HL8A 2EE7A 2EYIA 4TXIA 1WYNA 2D85A 4Q57B 2DK9A 3KMWB 4B7LA 1DXXA 2JV9A 1WYOA 2L3GA 3F7PA 2E9KA 2WDTA 5BVRA 1SH6A 5FMUA 1P2XA 2WA6A 4EDNA 3KY9A 2VE7A 3KMUB 2R0OA 1BKRA 2YRNA 2HKPA 1VKAA 2VZIB 5A36A 1WYPA 4Q59A 1AA2A 1WYQA 1WYRA 2D89A 1EUVA 3EAYA 1P5SA 4Q58A 1WJOA 2RR8A 2EQOA 3VP7A 2WE6A 3JARM 3I6XA 2VZGB 5J8EA 5FMTA 2QJZA 2D88A 2R8UA 3HOCA 3HOPA 2K2RA 3JAKM 2IGPA 2HL9A 3REPB 2WFNA 2WA5A 1WYLA 2WA7A 3CO1A 1UEGA 1TJTA 2K3SA 2D87A 1SH5A 1RT8A 1AOAA 1WYMA 5A38A 5L0OA 1H67A 3HORA 1WIXA 1MB8A 4EDMA 2VZCA 1QAGA 5A4BA 4TXKA 1UJOA 4LVPA 1PA7A 4EDLA 3JALM 1V5KA 2D86A 3FERA 1WKUA 1BHDA 1PXYA 2VE7C 4DDPA 2EYNA 2QJXA 5A37A 4LVRA 2VZDA
chains in the Genus database with same CATH topology

2WE6A 2HL8A 2VE7A 4LVPA 2IGPA 4LVRA 2WDTA 2VE7C 5FMTA 2EQOA 3VP7A 5FMUA 4DDPA 2HL9A 1EUVA 2HKPA 3EAYA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4DDP A;  3VP7 A; 
#chains in the Genus database with same CATH topology
 2HL8 A;  2EE7 A;  2EYI A;  4TXI A;  1WYN A;  2D85 A;  4Q57 B;  2DK9 A;  3KMW B;  4B7L A;  1DXX A;  2JV9 A;  1WYO A;  2L3G A;  3F7P A;  2E9K A;  2WDT A;  5BVR A;  1SH6 A;  5FMU A;  1P2X A;  2WA6 A;  4EDN A;  3KY9 A;  2VE7 A;  3KMU B;  2R0O A;  1BKR A;  2YRN A;  2HKP A;  1VKA A;  2VZI B;  5A36 A;  1WYP A;  4Q59 A;  1AA2 A;  1WYQ A;  1WYR A;  2D89 A;  1EUV A;  3EAY A;  1P5S A;  4Q58 A;  1WJO A;  2RR8 A;  2EQO A;  3VP7 A;  2WE6 A;  3JAR M;  3I6X A;  2VZG B;  5J8E A;  5FMT A;  2QJZ A;  2D88 A;  2R8U A;  3HOC A;  3HOP A;  2K2R A;  3JAK M;  2IGP A;  2HL9 A;  3REP B;  2WFN A;  2WA5 A;  1WYL A;  2WA7 A;  3CO1 A;  1UEG A;  1TJT A;  2K3S A;  2D87 A;  1SH5 A;  1RT8 A;  1AOA A;  1WYM A;  5A38 A;  5L0O A;  1H67 A;  3HOR A;  1WIX A;  1MB8 A;  4EDM A;  2VZC A;  1QAG A;  5A4B A;  4TXK A;  1UJO A;  4LVP A;  1PA7 A;  4EDL A;  3JAL M;  1V5K A;  2D86 A;  3FER A;  1WKU A;  1BHD A;  1PXY A;  2VE7 C;  4DDP A;  2EYN A;  2QJX A;  5A37 A;  4LVR A;  2VZD A; 
#chains in the Genus database with same CATH homology
 2WE6 A;  2HL8 A;  2VE7 A;  4LVP A;  2IGP A;  4LVR A;  2WDT A;  2VE7 C;  5FMT A;  2EQO A;  3VP7 A;  5FMU A;  4DDP A;  2HL9 A;  1EUV A;  2HKP A;  3EAY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3VP7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization