The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
219
|
structure length |
166
|
Chain Sequence |
INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMDWLILPVYYDETKFDKSLETTLEIISEITRQLSTIASSLELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNLLS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the novel C-terminal domain of VPS30/ATG6 and its specific role in autophagy
rcsb |
| molecule tags |
Protein transport
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
Vacuolar protein sorting-associated protein 30
|
| total genus |
52
|
| structure length |
166
|
| sequence length |
219
|
| ec nomenclature | |
| pdb deposition date | 2012-02-28 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Actin-binding Protein, T-fimbrin; domain 1 | Actin-binding Protein, T-fimbrin; domain 1 |
#chains in the Genus database with same CATH superfamily 3VP7 A; 4DDP A; #chains in the Genus database with same CATH topology 1P2X A; 2D89 A; 2HL9 A; 2R8U A; 2IGP A; 3KY9 A; 1SH6 A; 2VZI B; 1WYP A; 3CO1 A; 1DXX A; 2EE7 A; 4Q58 A; 1WYM A; 3HOC A; 1MB8 A; 2VZG B; 4TXK A; 2K3S A; 3KMW B; 5J8E A; 1EUV A; 1WYQ A; 2HKP A; 5A37 A; 1TJT A; 2JV9 A; 5A4B A; 1WYR A; 3I6X A; 1WYL A; 3JAR M; 4TXI A; 3JAK M; 1AOA A; 1WIX A; 4LVR A; 5A36 A; 3JAL M; 4EDM A; 2WE6 A; 2D86 A; 1P5S A; 1BHD A; 2EYI A; 1AA2 A; 3EAY A; 1SH5 A; 2VE7 C; 2WA7 A; 1V5K A; 1WYN A; 4Q57 B; 2RR8 A; 2VE7 A; 2DK9 A; 1WKU A; 2YRN A; 2WFN A; 3FER A; 1RT8 A; 2EQO A; 4Q59 A; 3VP7 A; 1BKR A; 1UJO A; 2D85 A; 2E9K A; 4DDP A; 1PXY A; 3KMU B; 5A38 A; 1WJO A; 5FMU A; 2WA6 A; 5BVR A; 5L0O A; 5FMT A; 1UEG A; 2K2R A; 2EYN A; 2VZD A; 2D88 A; 3HOP A; 1WYO A; 3F7P A; 4B7L A; 1PA7 A; 3HOR A; 2WDT A; 2L3G A; 3REP B; 2VZC A; 2WA5 A; 2QJX A; 2HL8 A; 2R0O A; 4LVP A; 4EDN A; 1H67 A; 1QAG A; 4EDL A; 2D87 A; 2QJZ A; 1VKA A; #chains in the Genus database with same CATH homology 2HKP A; 3VP7 A; 5FMT A; 2VE7 A; 3EAY A; 4LVR A; 2HL9 A; 4DDP A; 2WDT A; 2IGP A; 2VE7 C; 2HL8 A; 4LVP A; 1EUV A; 5FMU A; 2WE6 A; 2EQO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
