4EDMA

Crystal structure of beta-parvin ch2 domain
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
127
structure length
127
Chain Sequence
ERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYFVPLHHFYLTPESFDQKVHNVSFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTKYKNVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for paxillin binding and focal adhesion targeting of beta-parvin.
pubmed doi rcsb
molecule tags Signaling protein
source organism Homo sapiens
molecule keywords Beta-parvin
total genus 38
structure length 127
sequence length 127
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4edmA00
1WKUA 1MB8A 5A4BA 2L3GA 2QJXA 3F7PA 1WYMA 1WYLA 2JV9A 3REPB 1AA2A 3HORA 1SH5A 2D85A 3CO1A 1QAGA 5L0OA 3KY9A 2R8UA 1P2XA 1VKAA 3JALM 2D89A 3JAKM 2K2RA 5J8EA 2EYNA 2D86A 2QJZA 2VZCA 4EDNA 2DK9A 1WYRA 3FERA 1RT8A 2D87A 2R0OA 4Q59A 1BKRA 4Q57B 4TXIA 1V5KA 1BHDA 3I6XA 5A37A 2VZIB 1H67A 2E9KA 3HOPA 1PXYA 1TJTA 2VZDA 1P5SA 1WYOA 1UEGA 4TXKA 2D88A 2RR8A 5A36A 5BVRA 3JARM 2YRNA 2K3SA 4B7LA 3HOCA 1WJOA 3KMWB 1AOAA 2EE7A 2EYIA 2WA5A 2VZGB 2WA7A 2WFNA 1SH6A 1WIXA 1WYQA 4EDLA 4EDMA 4Q58A 1DXXA 1PA7A 1UJOA 1WYNA 3KMUB 5A38A 1WYPA 2WA6A
chains in the Genus database with same CATH superfamily
2VE7C 1WKUA 1MB8A 5A4BA 2L3GA 2QJXA 4DDPA 3F7PA 1WYMA 1WYLA 2JV9A 3REPB 1AA2A 3HORA 1SH5A 2WE6A 2D85A 2VE7A 3CO1A 1QAGA 4LVRA 5L0OA 3KY9A 2R8UA 1P2XA 1VKAA 3JALM 2D89A 3JAKM 2K2RA 5J8EA 2EYNA 2D86A 2QJZA 2VZCA 4EDNA 2DK9A 1WYRA 3FERA 1RT8A 2D87A 2R0OA 4Q59A 4LVPA 1BKRA 4Q57B 2HL9A 4TXIA 2WDTA 1V5KA 3VP7A 1BHDA 3I6XA 5A37A 2IGPA 2VZIB 1H67A 2E9KA 2HKPA 3HOPA 1PXYA 2HL8A 5FMTA 1TJTA 3EAYA 2VZDA 1P5SA 1WYOA 5FMUA 1UEGA 4TXKA 2EQOA 2D88A 1EUVA 2RR8A 5A36A 5BVRA 3JARM 2YRNA 2K3SA 4B7LA 3HOCA 1WJOA 3KMWB 1AOAA 2EE7A 2EYIA 2WA5A 2VZGB 2WA7A 2WFNA 1SH6A 1WIXA 1WYQA 4EDLA 4EDMA 4Q58A 1DXXA 1PA7A 1UJOA 1WYNA 3KMUB 5A38A 1WYPA 2WA6A
chains in the Genus database with same CATH topology
1WKUA 1MB8A 5A4BA 2L3GA 2QJXA 3F7PA 1WYMA 1WYLA 2JV9A 3REPB 1AA2A 3HORA 1SH5A 2D85A 3CO1A 1QAGA 5L0OA 3KY9A 2R8UA 1P2XA 1VKAA 3JALM 2D89A 3JAKM 2K2RA 5J8EA 2EYNA 2D86A 2QJZA 2VZCA 4EDNA 2DK9A 1WYRA 3FERA 1RT8A 2D87A 2R0OA 4Q59A 1BKRA 4Q57B 4TXIA 1V5KA 1BHDA 3I6XA 5A37A 2VZIB 1H67A 2E9KA 3HOPA 1PXYA 1TJTA 2VZDA 1P5SA 1WYOA 1UEGA 4TXKA 2D88A 2RR8A 5A36A 5BVRA 3JARM 2YRNA 2K3SA 4B7LA 3HOCA 1WJOA 3KMWB 1AOAA 2EE7A 2EYIA 2WA5A 2VZGB 2WA7A 2WFNA 1SH6A 1WIXA 1WYQA 4EDLA 4EDMA 4Q58A 1DXXA 1PA7A 1UJOA 1WYNA 3KMUB 5A38A 1WYPA 2WA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WKU A;  1MB8 A;  5A4B A;  2L3G A;  2QJX A;  3F7P A;  1WYM A;  1WYL A;  2JV9 A;  3REP B;  1AA2 A;  3HOR A;  1SH5 A;  2D85 A;  3CO1 A;  1QAG A;  5L0O A;  3KY9 A;  2R8U A;  1P2X A;  1VKA A;  3JAL M;  2D89 A;  3JAK M;  2K2R A;  5J8E A;  2EYN A;  2D86 A;  2QJZ A;  2VZC A;  4EDN A;  2DK9 A;  1WYR A;  3FER A;  1RT8 A;  2D87 A;  2R0O A;  4Q59 A;  1BKR A;  4Q57 B;  4TXI A;  1V5K A;  1BHD A;  3I6X A;  5A37 A;  2VZI B;  1H67 A;  2E9K A;  3HOP A;  1PXY A;  1TJT A;  2VZD A;  1P5S A;  1WYO A;  1UEG A;  4TXK A;  2D88 A;  2RR8 A;  5A36 A;  5BVR A;  3JAR M;  2YRN A;  2K3S A;  4B7L A;  3HOC A;  1WJO A;  3KMW B;  1AOA A;  2EE7 A;  2EYI A;  2WA5 A;  2VZG B;  2WA7 A;  2WFN A;  1SH6 A;  1WIX A;  1WYQ A;  4EDL A;  4EDM A;  4Q58 A;  1DXX A;  1PA7 A;  1UJO A;  1WYN A;  3KMU B;  5A38 A;  1WYP A;  2WA6 A; 
#chains in the Genus database with same CATH topology
 2VE7 C;  1WKU A;  1MB8 A;  5A4B A;  2L3G A;  2QJX A;  4DDP A;  3F7P A;  1WYM A;  1WYL A;  2JV9 A;  3REP B;  1AA2 A;  3HOR A;  1SH5 A;  2WE6 A;  2D85 A;  2VE7 A;  3CO1 A;  1QAG A;  4LVR A;  5L0O A;  3KY9 A;  2R8U A;  1P2X A;  1VKA A;  3JAL M;  2D89 A;  3JAK M;  2K2R A;  5J8E A;  2EYN A;  2D86 A;  2QJZ A;  2VZC A;  4EDN A;  2DK9 A;  1WYR A;  3FER A;  1RT8 A;  2D87 A;  2R0O A;  4Q59 A;  4LVP A;  1BKR A;  4Q57 B;  2HL9 A;  4TXI A;  2WDT A;  1V5K A;  3VP7 A;  1BHD A;  3I6X A;  5A37 A;  2IGP A;  2VZI B;  1H67 A;  2E9K A;  2HKP A;  3HOP A;  1PXY A;  2HL8 A;  5FMT A;  1TJT A;  3EAY A;  2VZD A;  1P5S A;  1WYO A;  5FMU A;  1UEG A;  4TXK A;  2EQO A;  2D88 A;  1EUV A;  2RR8 A;  5A36 A;  5BVR A;  3JAR M;  2YRN A;  2K3S A;  4B7L A;  3HOC A;  1WJO A;  3KMW B;  1AOA A;  2EE7 A;  2EYI A;  2WA5 A;  2VZG B;  2WA7 A;  2WFN A;  1SH6 A;  1WIX A;  1WYQ A;  4EDL A;  4EDM A;  4Q58 A;  1DXX A;  1PA7 A;  1UJO A;  1WYN A;  3KMU B;  5A38 A;  1WYP A;  2WA6 A; 
#chains in the Genus database with same CATH homology
 1WKU A;  1MB8 A;  5A4B A;  2L3G A;  2QJX A;  3F7P A;  1WYM A;  1WYL A;  2JV9 A;  3REP B;  1AA2 A;  3HOR A;  1SH5 A;  2D85 A;  3CO1 A;  1QAG A;  5L0O A;  3KY9 A;  2R8U A;  1P2X A;  1VKA A;  3JAL M;  2D89 A;  3JAK M;  2K2R A;  5J8E A;  2EYN A;  2D86 A;  2QJZ A;  2VZC A;  4EDN A;  2DK9 A;  1WYR A;  3FER A;  1RT8 A;  2D87 A;  2R0O A;  4Q59 A;  1BKR A;  4Q57 B;  4TXI A;  1V5K A;  1BHD A;  3I6X A;  5A37 A;  2VZI B;  1H67 A;  2E9K A;  3HOP A;  1PXY A;  1TJT A;  2VZD A;  1P5S A;  1WYO A;  1UEG A;  4TXK A;  2D88 A;  2RR8 A;  5A36 A;  5BVR A;  3JAR M;  2YRN A;  2K3S A;  4B7L A;  3HOC A;  1WJO A;  3KMW B;  1AOA A;  2EE7 A;  2EYI A;  2WA5 A;  2VZG B;  2WA7 A;  2WFN A;  1SH6 A;  1WIX A;  1WYQ A;  4EDL A;  4EDM A;  4Q58 A;  1DXX A;  1PA7 A;  1UJO A;  1WYN A;  3KMU B;  5A38 A;  1WYP A;  2WA6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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