The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
139
|
sequence length |
413
|
structure length |
413
|
Chain Sequence |
AFIERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLPKNTGMLPYINSNDVKTLIEQDYSIKIDKIVRIVIEGKQYIKAEASIVNSLDFKDDVSKGDLWGKENYSDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGEYAVLLNHGSKFKINKVDSYKDGTVTKLILDATLIN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Arginine ADP-ribosylation mechanism based on structural snapshots of iota-toxin and actin complex
pubmed doi rcsb |
| molecule keywords |
Iota toxin component Ia
|
| molecule tags |
Toxin/structural protein
|
| source organism |
Clostridium perfringens
|
| total genus |
139
|
| structure length |
413
|
| sequence length |
413
|
| ec nomenclature |
ec
2.4.2.31: NAD(+)--protein-arginine ADP-ribosyltransferase. |
| pdb deposition date | 2012-09-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03496 | ADPrib_exo_Tox | ADP-ribosyltransferase exoenzyme |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Toxin ADP-ribosyltransferase; Chain A, domain 1 | Toxin ADP-ribosyltransferase; Chain A, domain 1 | ||
| Alpha Beta | Alpha-Beta Complex | Toxin ADP-ribosyltransferase; Chain A, domain 1 | Toxin ADP-ribosyltransferase; Chain A, domain 1 |
#chains in the Genus database with same CATH superfamily 5D1S A; 4PKV A; 5H03 A; 4GF1 A; 1GY0 A; 4XM8 A; 2GWM A; 4XM6 A; 1GZF A; 3BUZ A; 2C8C A; 4DV8 A; 2J3V A; 1OG4 A; 5DZQ A; 4PKR A; 2C8B X; 1GIR A; 1J7N A; 1PWP A; 2WN7 A; 5H04 A; 1PWU A; 1GXZ A; 2GWL A; 2C8G A; 4XM7 A; 4GY2 A; 4WF6 A; 1G24 A; 5GTT A; 1OG1 A; 4H0X A; 2BOV B; 1PWQ A; 5D1U A; 2C8D A; 2A78 B; 2A9K B; 1GZE A; 3BW8 A; 1PWV A; 4XSG B; 1UZI A; 1R4B A; 2WN4 A; 4ELN A; 4H0Y A; 1ZXV A; 1OJQ A; 3U0J A; 4PKU A; 4PKW A; 1QS1 A; 1PWW A; 4PKT A; 2C89 A; 2WN5 A; 2WN8 A; 4TR5 A; 3NTS A; 1JKY A; 5D1T A; 4PKQ A; 1R45 A; 2J3Z A; 4FXQ A; 4XSH B; 1OG3 A; 2J3X A; 2WN6 A; 1GIQ A; 2C8F E; 2C8A A; 4FK7 A; 1QS2 A; 4H0V A; 5BWM B; 1YQY A; 1OJZ A; 4PKS A; 2C8E E; 1GXY A; 4H03 A; 2C8H A; 4FML A; 4H0T A; #chains in the Genus database with same CATH topology 5D1S A; 4PKV A; 5H03 A; 4GF1 A; 1GY0 A; 4XM8 A; 2GWM A; 4XM6 A; 1GZF A; 3BUZ A; 2C8C A; 4DV8 A; 2J3V A; 1OG4 A; 5DZQ A; 4PKR A; 2C8B X; 1GIR A; 1J7N A; 1PWP A; 2WN7 A; 5H04 A; 1PWU A; 1GXZ A; 2GWL A; 2C8G A; 4XM7 A; 4GY2 A; 4WF6 A; 1G24 A; 5GTT A; 1OG1 A; 4H0X A; 2BOV B; 1PWQ A; 5D1U A; 2C8D A; 2A78 B; 2A9K B; 1GZE A; 3BW8 A; 1PWV A; 4XSG B; 1UZI A; 1R4B A; 2WN4 A; 4ELN A; 4H0Y A; 1ZXV A; 1OJQ A; 3U0J A; 4PKU A; 4PKW A; 1QS1 A; 1PWW A; 4PKT A; 2C89 A; 2WN5 A; 2WN8 A; 4TR5 A; 3NTS A; 1JKY A; 5D1T A; 4PKQ A; 1R45 A; 2J3Z A; 4FXQ A; 4XSH B; 1OG3 A; 2J3X A; 2WN6 A; 1GIQ A; 2C8F E; 2C8A A; 4FK7 A; 1QS2 A; 4H0V A; 5BWM B; 1YQY A; 1OJZ A; 4PKS A; 2C8E E; 1GXY A; 4H03 A; 2C8H A; 4FML A; 4H0T A; #chains in the Genus database with same CATH homology 5D1S A; 4PKV A; 5H03 A; 4GF1 A; 1GY0 A; 4XM8 A; 2GWM A; 4XM6 A; 1GZF A; 3BUZ A; 2C8C A; 4DV8 A; 2J3V A; 1OG4 A; 5DZQ A; 4PKR A; 2C8B X; 1GIR A; 1J7N A; 1PWP A; 2WN7 A; 5H04 A; 1PWU A; 1GXZ A; 2GWL A; 2C8G A; 4XM7 A; 4GY2 A; 4WF6 A; 1G24 A; 5GTT A; 1OG1 A; 4H0X A; 2BOV B; 1PWQ A; 5D1U A; 2C8D A; 2A78 B; 2A9K B; 1GZE A; 3BW8 A; 1PWV A; 4XSG B; 1UZI A; 1R4B A; 2WN4 A; 4ELN A; 4H0Y A; 1ZXV A; 1OJQ A; 3U0J A; 4PKU A; 4PKW A; 1QS1 A; 1PWW A; 4PKT A; 2C89 A; 2WN5 A; 2WN8 A; 4TR5 A; 3NTS A; 1JKY A; 5D1T A; 4PKQ A; 1R45 A; 2J3Z A; 4FXQ A; 4XSH B; 1OG3 A; 2J3X A; 2WN6 A; 1GIQ A; 2C8F E; 2C8A A; 4FK7 A; 1QS2 A; 4H0V A; 5BWM B; 1YQY A; 1OJZ A; 4PKS A; 2C8E E; 1GXY A; 4H03 A; 2C8H A; 4FML A; 4H0T A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
