4LVP | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	126
structure length	124
Chain Sequence	AMGDVSYIVDSLGLPPFSYQMSLLSFTEKGPQELLQLLSDVFSTISPQKVDVAKEVPDQTADRLIGFLKIIKYRPNVQDPLLFRQLVAAGDRETLYQILRWVVPQAQLLEKRAFVGYYLSFPDM

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 124 atoms

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124 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Chlamydomonas reinhardtii
publication title	Molecular Basis of Tubulin Transport Within the Cilium by IFT74 and IFT81. pubmed doi rcsb
molecule keywords	Intraflagellar transport protein 81
total genus	38
structure length	124
sequence length	126
ec nomenclature
pdb deposition date	2013-07-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF18383	IFT81_CH	Intraflagellar transport 81 calponin homology domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.418.70	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin; domain 1	Actin-binding Protein, T-fimbrin; domain 1	4lvpA00

4LVRA 4LVPA
chains in the Genus database with same CATH superfamily

2RR8A 4Q58A 2WA7A 1PA7A 3JARM 1H67A 1PXYA 2WA6A 2EQOA 3REPB 4LVPA 5J8EA 4Q57B 4TXIA 2D89A 1WYRA 1P2XA 5A37A 3JALM 3KY9A 3KMWB 2VZCA 1MB8A 1P5SA 1RT8A 1V5KA 2EYIA 1WYOA 2D86A 5A36A 2HL8A 2D87A 2K3SA 2QJZA 1UEGA 2EYNA 2VZDA 1WYNA 2HL9A 2VE7C 4LVRA 5FMTA 5BVRA 3I6XA 1WJOA 1WYLA 4EDNA 1DXXA 5L0OA 2D85A 2QJXA 2R8UA 3HOCA 2WE6A 4TXKA 1WIXA 2K2RA 1EUVA 1VKAA 2WA5A 3F7PA 3FERA 2VZGB 2DK9A 4Q59A 2HKPA 1SH5A 4EDMA 1BHDA 1BKRA 1WYMA 1TJTA 2WDTA 1WYQA 2YRNA 2JV9A 5FMUA 2E9KA 5A38A 2EE7A 3VP7A 2VE7A 1WYPA 3JAKM 2L3GA 3KMUB 1UJOA 2IGPA 1AOAA 4DDPA 3HOPA 1QAGA 3HORA 1SH6A 2D88A 4EDLA 1WKUA 1AA2A 3EAYA 4B7LA 2WFNA 2R0OA 5A4BA 3CO1A 2VZIB
chains in the Genus database with same CATH topology

5FMTA 3EAYA 3VP7A 4DDPA 2EQOA 2VE7A 2WE6A 2HKPA 4LVPA 2HL8A 1EUVA 2VE7C 4LVRA 2IGPA 5FMUA 2HL9A 2WDTA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4LVR A;  4LVP A; 
#chains in the Genus database with same CATH topology
 2RR8 A;  4Q58 A;  2WA7 A;  1PA7 A;  3JAR M;  1H67 A;  1PXY A;  2WA6 A;  2EQO A;  3REP B;  4LVP A;  5J8E A;  4Q57 B;  4TXI A;  2D89 A;  1WYR A;  1P2X A;  5A37 A;  3JAL M;  3KY9 A;  3KMW B;  2VZC A;  1MB8 A;  1P5S A;  1RT8 A;  1V5K A;  2EYI A;  1WYO A;  2D86 A;  5A36 A;  2HL8 A;  2D87 A;  2K3S A;  2QJZ A;  1UEG A;  2EYN A;  2VZD A;  1WYN A;  2HL9 A;  2VE7 C;  4LVR A;  5FMT A;  5BVR A;  3I6X A;  1WJO A;  1WYL A;  4EDN A;  1DXX A;  5L0O A;  2D85 A;  2QJX A;  2R8U A;  3HOC A;  2WE6 A;  4TXK A;  1WIX A;  2K2R A;  1EUV A;  1VKA A;  2WA5 A;  3F7P A;  3FER A;  2VZG B;  2DK9 A;  4Q59 A;  2HKP A;  1SH5 A;  4EDM A;  1BHD A;  1BKR A;  1WYM A;  1TJT A;  2WDT A;  1WYQ A;  2YRN A;  2JV9 A;  5FMU A;  2E9K A;  5A38 A;  2EE7 A;  3VP7 A;  2VE7 A;  1WYP A;  3JAK M;  2L3G A;  3KMU B;  1UJO A;  2IGP A;  1AOA A;  4DDP A;  3HOP A;  1QAG A;  3HOR A;  1SH6 A;  2D88 A;  4EDL A;  1WKU A;  1AA2 A;  3EAY A;  4B7L A;  2WFN A;  2R0O A;  5A4B A;  3CO1 A;  2VZI B; 
#chains in the Genus database with same CATH homology
 5FMT A;  3EAY A;  3VP7 A;  4DDP A;  2EQO A;  2VE7 A;  2WE6 A;  2HKP A;  4LVP A;  2HL8 A;  1EUV A;  2VE7 C;  4LVR A;  2IGP A;  5FMU A;  2HL9 A;  2WDT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4LVPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations