4LVRA

Crystal structure of ift81 n-terminal domain
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
124
structure length
120
Chain Sequence
MGDVSYIVDSLGLPPFSYQMSLLSFTEKGPQELLQLLSDVFSTIQKVDVAKEVPDQTADRLIGFLKIIKYRPNVQDPLLFRQLVAAGDRETLYQILRWVVPQAQLLEKRAFVGYYLSFPD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Basis of Tubulin Transport Within the Cilium by IFT74 and IFT81.
pubmed doi rcsb
molecule tags Transport protein
source organism Chlamydomonas reinhardtii
molecule keywords Intraflagellar transport protein 81
total genus 36
structure length 120
sequence length 124
ec nomenclature
pdb deposition date 2013-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18383 IFT81_CH Intraflagellar transport 81 calponin homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.70 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 4lvrA00
4LVRA 4LVPA
chains in the Genus database with same CATH superfamily
4Q59A 2D89A 1AOAA 2VZDA 2JV9A 3HOPA 5A4BA 2DK9A 2VE7A 2VZCA 1DXXA 1WYNA 2EYIA 2D88A 4Q57B 1WIXA 5A36A 1V5KA 2WFNA 1WJOA 2WDTA 5J8EA 5FMUA 2WA6A 3KY9A 1PA7A 2WA7A 2HL8A 1TJTA 5A38A 3VP7A 3F7PA 3CO1A 2EQOA 1P5SA 1QAGA 3EAYA 2R0OA 3HORA 4LVPA 3I6XA 2D87A 3KMUB 2WA5A 2HL9A 2D85A 2D86A 4EDLA 5L0OA 1WKUA 1AA2A 2L3GA 2K2RA 3KMWB 2K3SA 2RR8A 4EDMA 1EUVA 1PXYA 2VZIB 2YRNA 1WYOA 2IGPA 4Q58A 2E9KA 3JALM 2EYNA 2R8UA 4B7LA 2EE7A 1UEGA 3FERA 1VKAA 3JAKM 5BVRA 1SH5A 1MB8A 3JARM 2VZGB 1RT8A 1SH6A 2QJXA 1WYQA 1WYRA 5FMTA 1H67A 2WE6A 1WYLA 2QJZA 1UJOA 3REPB 4DDPA 4TXIA 5A37A 1P2XA 1WYMA 4EDNA 2HKPA 4LVRA 1BKRA 1BHDA 1WYPA 3HOCA 4TXKA 2VE7C
chains in the Genus database with same CATH topology
2HKPA 2HL8A 4LVRA 4DDPA 5FMTA 2IGPA 3VP7A 2WE6A 2HL9A 1EUVA 2WDTA 2VE7C 2EQOA 5FMUA 4LVPA 3EAYA 2VE7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LVR A;  4LVP A; 
#chains in the Genus database with same CATH topology
 4Q59 A;  2D89 A;  1AOA A;  2VZD A;  2JV9 A;  3HOP A;  5A4B A;  2DK9 A;  2VE7 A;  2VZC A;  1DXX A;  1WYN A;  2EYI A;  2D88 A;  4Q57 B;  1WIX A;  5A36 A;  1V5K A;  2WFN A;  1WJO A;  2WDT A;  5J8E A;  5FMU A;  2WA6 A;  3KY9 A;  1PA7 A;  2WA7 A;  2HL8 A;  1TJT A;  5A38 A;  3VP7 A;  3F7P A;  3CO1 A;  2EQO A;  1P5S A;  1QAG A;  3EAY A;  2R0O A;  3HOR A;  4LVP A;  3I6X A;  2D87 A;  3KMU B;  2WA5 A;  2HL9 A;  2D85 A;  2D86 A;  4EDL A;  5L0O A;  1WKU A;  1AA2 A;  2L3G A;  2K2R A;  3KMW B;  2K3S A;  2RR8 A;  4EDM A;  1EUV A;  1PXY A;  2VZI B;  2YRN A;  1WYO A;  2IGP A;  4Q58 A;  2E9K A;  3JAL M;  2EYN A;  2R8U A;  4B7L A;  2EE7 A;  1UEG A;  3FER A;  1VKA A;  3JAK M;  5BVR A;  1SH5 A;  1MB8 A;  3JAR M;  2VZG B;  1RT8 A;  1SH6 A;  2QJX A;  1WYQ A;  1WYR A;  5FMT A;  1H67 A;  2WE6 A;  1WYL A;  2QJZ A;  1UJO A;  3REP B;  4DDP A;  4TXI A;  5A37 A;  1P2X A;  1WYM A;  4EDN A;  2HKP A;  4LVR A;  1BKR A;  1BHD A;  1WYP A;  3HOC A;  4TXK A;  2VE7 C; 
#chains in the Genus database with same CATH homology
 2HKP A;  2HL8 A;  4LVR A;  4DDP A;  5FMT A;  2IGP A;  3VP7 A;  2WE6 A;  2HL9 A;  1EUV A;  2WDT A;  2VE7 C;  2EQO A;  5FMU A;  4LVP A;  3EAY A;  2VE7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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