4LVRA

Crystal structure of ift81 n-terminal domain
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
124
structure length
120
Chain Sequence
MGDVSYIVDSLGLPPFSYQMSLLSFTEKGPQELLQLLSDVFSTIQKVDVAKEVPDQTADRLIGFLKIIKYRPNVQDPLLFRQLVAAGDRETLYQILRWVVPQAQLLEKRAFVGYYLSFPD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Basis of Tubulin Transport Within the Cilium by IFT74 and IFT81.
pubmed doi rcsb
molecule tags Transport protein
source organism Chlamydomonas reinhardtii
molecule keywords Intraflagellar transport protein 81
total genus 36
structure length 120
sequence length 124
ec nomenclature
pdb deposition date 2013-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18383 IFT81_CH Intraflagellar transport 81 calponin homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.70 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 4lvrA00
4LVRA 4LVPA
chains in the Genus database with same CATH superfamily
1TJTA 2WA7A 1WYLA 4B7LA 3HOPA 5FMTA 2VZDA 2QJXA 2HL8A 1SH5A 2YRNA 4TXIA 1BHDA 2K3SA 2VZIB 1WYQA 1MB8A 2HKPA 3REPB 2L3GA 3JALM 1WIXA 1RT8A 4Q57B 3JARM 4LVPA 5L0OA 2D85A 3KY9A 2EYIA 2D89A 1QAGA 2EE7A 1H67A 1P2XA 1WYPA 2JV9A 2K2RA 2D87A 2WFNA 2IGPA 2WA5A 3HORA 2WE6A 1AOAA 2EYNA 2D86A 1P5SA 1AA2A 5A38A 4TXKA 2VZGB 1BKRA 3HOCA 5FMUA 3I6XA 1SH6A 1UEGA 2E9KA 3F7PA 1PA7A 1WKUA 4Q58A 5A36A 2RR8A 3KMUB 5J8EA 2R0OA 2WA6A 4DDPA 2WDTA 3JAKM 4EDLA 3VP7A 3EAYA 2VZCA 2VE7A 5A37A 1PXYA 1WJOA 2QJZA 5BVRA 2R8UA 1EUVA 1UJOA 1WYRA 3CO1A 5A4BA 2D88A 1DXXA 1VKAA 2DK9A 1WYMA 3KMWB 2HL9A 4EDMA 1WYOA 1WYNA 3FERA 1V5KA 4EDNA 2EQOA 2VE7C 4LVRA 4Q59A
chains in the Genus database with same CATH topology
2WE6A 4LVPA 5FMTA 2HL8A 1EUVA 2HL9A 2HKPA 2VE7A 3EAYA 5FMUA 2VE7C 3VP7A 4DDPA 2WDTA 2EQOA 2IGPA 4LVRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LVR A;  4LVP A; 
#chains in the Genus database with same CATH topology
 1TJT A;  2WA7 A;  1WYL A;  4B7L A;  3HOP A;  5FMT A;  2VZD A;  2QJX A;  2HL8 A;  1SH5 A;  2YRN A;  4TXI A;  1BHD A;  2K3S A;  2VZI B;  1WYQ A;  1MB8 A;  2HKP A;  3REP B;  2L3G A;  3JAL M;  1WIX A;  1RT8 A;  4Q57 B;  3JAR M;  4LVP A;  5L0O A;  2D85 A;  3KY9 A;  2EYI A;  2D89 A;  1QAG A;  2EE7 A;  1H67 A;  1P2X A;  1WYP A;  2JV9 A;  2K2R A;  2D87 A;  2WFN A;  2IGP A;  2WA5 A;  3HOR A;  2WE6 A;  1AOA A;  2EYN A;  2D86 A;  1P5S A;  1AA2 A;  5A38 A;  4TXK A;  2VZG B;  1BKR A;  3HOC A;  5FMU A;  3I6X A;  1SH6 A;  1UEG A;  2E9K A;  3F7P A;  1PA7 A;  1WKU A;  4Q58 A;  5A36 A;  2RR8 A;  3KMU B;  5J8E A;  2R0O A;  2WA6 A;  4DDP A;  2WDT A;  3JAK M;  4EDL A;  3VP7 A;  3EAY A;  2VZC A;  2VE7 A;  5A37 A;  1PXY A;  1WJO A;  2QJZ A;  5BVR A;  2R8U A;  1EUV A;  1UJO A;  1WYR A;  3CO1 A;  5A4B A;  2D88 A;  1DXX A;  1VKA A;  2DK9 A;  1WYM A;  3KMW B;  2HL9 A;  4EDM A;  1WYO A;  1WYN A;  3FER A;  1V5K A;  4EDN A;  2EQO A;  2VE7 C;  4LVR A;  4Q59 A; 
#chains in the Genus database with same CATH homology
 2WE6 A;  4LVP A;  5FMT A;  2HL8 A;  1EUV A;  2HL9 A;  2HKP A;  2VE7 A;  3EAY A;  5FMU A;  2VE7 C;  3VP7 A;  4DDP A;  2WDT A;  2EQO A;  2IGP A;  4LVR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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