4TXIA

Construct of mical-1 containing the monooxygenase and calponin homology domains
Total Genus 178

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
178
sequence length
607
structure length
583
Chain Sequence
NPAHDHFETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEETQVPEISGVARIYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGAGPLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMDSAGTEELLHWCQEQTAGFPGVHVTDFSSSWADGLALCALVHHLQPGLLQGMGALEATTWALRVAEHELGITPVLSAQAVMAGSDPLGLIAYLSHFHSAFKNTS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Mus musculus
publication title Modulation of MICAL Monooxygenase Activity by its Calponin Homology Domain: Structural and Mechanistic Insights.
pubmed doi rcsb
molecule keywords Protein-methionine sulfoxide oxidase MICAL1
total genus 178
structure length 583
sequence length 607
ec nomenclature ec 1.14.13.225: F-actin monooxygenase.
pdb deposition date 2014-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
A PF01494 FAD_binding_3 FAD binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4txiA03
3JAKM 4TXKA 1PXYA 3HOPA 2QJZA 3JARM 1TJTA 3CO1A 5L0OA 2R0OA 1SH6A 1WYQA 2WA5A 4Q59A 4TXIA 2VZCA 1DXXA 1VKAA 1WYRA 1AOAA 3HOCA 2EE7A 3HORA 1PA7A 2EYNA 1WYNA 2D85A 3KMWB 2L3GA 2R8UA 3I6XA 2D86A 4Q57B 1MB8A 2E9KA 2D87A 2EYIA 1RT8A 2D88A 4EDMA 2QJXA 1BHDA 5A36A 2YRNA 4EDNA 1H67A 3FERA 5J8EA 5BVRA 1UEGA 1QAGA 5A38A 1BKRA 2K3SA 3REPB 2VZIB 5A4BA 2WA6A 1SH5A 2JV9A 3F7PA 4Q58A 1P5SA 2VZGB 3KMUB 5A37A 2RR8A 3JALM 4B7LA 1WYLA 2K2RA 2D89A 2DK9A 1UJOA 4EDLA 1WIXA 3KY9A 1AA2A 1V5KA 1WYPA 1WYMA 2WFNA 1P2XA 1WKUA 2VZDA 2WA7A 1WYOA 1WJOA
chains in the Genus database with same CATH superfamily
3JAKM 4TXKA 1PXYA 3HOPA 2QJZA 1EUVA 3JARM 1TJTA 3CO1A 5L0OA 3EAYA 2R0OA 2WDTA 1SH6A 1WYQA 2EQOA 2HKPA 2WA5A 4Q59A 4TXIA 2VZCA 4LVRA 1DXXA 1VKAA 5FMTA 1WYRA 1AOAA 3HOCA 2EE7A 3HORA 1PA7A 2EYNA 1WYNA 4LVPA 2D85A 3KMWB 2L3GA 2R8UA 3I6XA 2D86A 4Q57B 1MB8A 2E9KA 2D87A 2EYIA 1RT8A 2VE7C 3VP7A 2D88A 4EDMA 2QJXA 1BHDA 5A36A 2YRNA 4EDNA 2HL8A 1H67A 3FERA 5J8EA 5BVRA 1UEGA 1QAGA 5A38A 4DDPA 1BKRA 2K3SA 3REPB 2VZIB 5A4BA 2WA6A 1SH5A 2JV9A 3F7PA 4Q58A 1P5SA 2VZGB 3KMUB 5A37A 2RR8A 2VE7A 3JALM 4B7LA 1WYLA 2K2RA 2D89A 2IGPA 2DK9A 1UJOA 4EDLA 1WIXA 2HL9A 3KY9A 5FMUA 1AA2A 1V5KA 1WYPA 1WYMA 2WFNA 1P2XA 1WKUA 2VZDA 2WA7A 2WE6A 1WYOA 1WJOA
chains in the Genus database with same CATH topology
3JAKM 4TXKA 1PXYA 3HOPA 2QJZA 3JARM 1TJTA 3CO1A 5L0OA 2R0OA 1SH6A 1WYQA 2WA5A 4Q59A 4TXIA 2VZCA 1DXXA 1VKAA 1WYRA 1AOAA 3HOCA 2EE7A 3HORA 1PA7A 2EYNA 1WYNA 2D85A 3KMWB 2L3GA 2R8UA 3I6XA 2D86A 4Q57B 1MB8A 2E9KA 2D87A 2EYIA 1RT8A 2D88A 4EDMA 2QJXA 1BHDA 5A36A 2YRNA 4EDNA 1H67A 3FERA 5J8EA 5BVRA 1UEGA 1QAGA 5A38A 1BKRA 2K3SA 3REPB 2VZIB 5A4BA 2WA6A 1SH5A 2JV9A 3F7PA 4Q58A 1P5SA 2VZGB 3KMUB 5A37A 2RR8A 3JALM 4B7LA 1WYLA 2K2RA 2D89A 2DK9A 1UJOA 4EDLA 1WIXA 3KY9A 1AA2A 1V5KA 1WYPA 1WYMA 2WFNA 1P2XA 1WKUA 2VZDA 2WA7A 1WYOA 1WJOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JAK M;  4TXK A;  1PXY A;  3HOP A;  2QJZ A;  3JAR M;  1TJT A;  3CO1 A;  5L0O A;  2R0O A;  1SH6 A;  1WYQ A;  2WA5 A;  4Q59 A;  4TXI A;  2VZC A;  1DXX A;  1VKA A;  1WYR A;  1AOA A;  3HOC A;  2EE7 A;  3HOR A;  1PA7 A;  2EYN A;  1WYN A;  2D85 A;  3KMW B;  2L3G A;  2R8U A;  3I6X A;  2D86 A;  4Q57 B;  1MB8 A;  2E9K A;  2D87 A;  2EYI A;  1RT8 A;  2D88 A;  4EDM A;  2QJX A;  1BHD A;  5A36 A;  2YRN A;  4EDN A;  1H67 A;  3FER A;  5J8E A;  5BVR A;  1UEG A;  1QAG A;  5A38 A;  1BKR A;  2K3S A;  3REP B;  2VZI B;  5A4B A;  2WA6 A;  1SH5 A;  2JV9 A;  3F7P A;  4Q58 A;  1P5S A;  2VZG B;  3KMU B;  5A37 A;  2RR8 A;  3JAL M;  4B7L A;  1WYL A;  2K2R A;  2D89 A;  2DK9 A;  1UJO A;  4EDL A;  1WIX A;  3KY9 A;  1AA2 A;  1V5K A;  1WYP A;  1WYM A;  2WFN A;  1P2X A;  1WKU A;  2VZD A;  2WA7 A;  1WYO A;  1WJO A; 
#chains in the Genus database with same CATH topology
 3JAK M;  4TXK A;  1PXY A;  3HOP A;  2QJZ A;  1EUV A;  3JAR M;  1TJT A;  3CO1 A;  5L0O A;  3EAY A;  2R0O A;  2WDT A;  1SH6 A;  1WYQ A;  2EQO A;  2HKP A;  2WA5 A;  4Q59 A;  4TXI A;  2VZC A;  4LVR A;  1DXX A;  1VKA A;  5FMT A;  1WYR A;  1AOA A;  3HOC A;  2EE7 A;  3HOR A;  1PA7 A;  2EYN A;  1WYN A;  4LVP A;  2D85 A;  3KMW B;  2L3G A;  2R8U A;  3I6X A;  2D86 A;  4Q57 B;  1MB8 A;  2E9K A;  2D87 A;  2EYI A;  1RT8 A;  2VE7 C;  3VP7 A;  2D88 A;  4EDM A;  2QJX A;  1BHD A;  5A36 A;  2YRN A;  4EDN A;  2HL8 A;  1H67 A;  3FER A;  5J8E A;  5BVR A;  1UEG A;  1QAG A;  5A38 A;  4DDP A;  1BKR A;  2K3S A;  3REP B;  2VZI B;  5A4B A;  2WA6 A;  1SH5 A;  2JV9 A;  3F7P A;  4Q58 A;  1P5S A;  2VZG B;  3KMU B;  5A37 A;  2RR8 A;  2VE7 A;  3JAL M;  4B7L A;  1WYL A;  2K2R A;  2D89 A;  2IGP A;  2DK9 A;  1UJO A;  4EDL A;  1WIX A;  2HL9 A;  3KY9 A;  5FMU A;  1AA2 A;  1V5K A;  1WYP A;  1WYM A;  2WFN A;  1P2X A;  1WKU A;  2VZD A;  2WA7 A;  2WE6 A;  1WYO A;  1WJO A; 
#chains in the Genus database with same CATH homology
 3JAK M;  4TXK A;  1PXY A;  3HOP A;  2QJZ A;  3JAR M;  1TJT A;  3CO1 A;  5L0O A;  2R0O A;  1SH6 A;  1WYQ A;  2WA5 A;  4Q59 A;  4TXI A;  2VZC A;  1DXX A;  1VKA A;  1WYR A;  1AOA A;  3HOC A;  2EE7 A;  3HOR A;  1PA7 A;  2EYN A;  1WYN A;  2D85 A;  3KMW B;  2L3G A;  2R8U A;  3I6X A;  2D86 A;  4Q57 B;  1MB8 A;  2E9K A;  2D87 A;  2EYI A;  1RT8 A;  2D88 A;  4EDM A;  2QJX A;  1BHD A;  5A36 A;  2YRN A;  4EDN A;  1H67 A;  3FER A;  5J8E A;  5BVR A;  1UEG A;  1QAG A;  5A38 A;  1BKR A;  2K3S A;  3REP B;  2VZI B;  5A4B A;  2WA6 A;  1SH5 A;  2JV9 A;  3F7P A;  4Q58 A;  1P5S A;  2VZG B;  3KMU B;  5A37 A;  2RR8 A;  3JAL M;  4B7L A;  1WYL A;  2K2R A;  2D89 A;  2DK9 A;  1UJO A;  4EDL A;  1WIX A;  3KY9 A;  1AA2 A;  1V5K A;  1WYP A;  1WYM A;  2WFN A;  1P2X A;  1WKU A;  2VZD A;  2WA7 A;  1WYO A;  1WJO A; 
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