5FMTA

Crift54 ch-domain
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
134
structure length
134
Chain Sequence
GAASMCDNWQATIDTLQGASPVFDKPKLSQKLLEKPPFRFLHDVVTAVQQATGFAPGLYQGDELDGKAIQEKDAKVAYLKKIIEVVSMVLGEQCPARPNKIVAGLEPENTNIFLQMLGRACQKGNGAKAVQKVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Intraflagellar Transport Proteins 172, 80, 57, 54, 38, and 20 Form a Stable Tubulin-Binding Ift-B2 Complex.
pubmed doi rcsb
molecule tags Protein transport
source organism Chlamydomonas reinhardtii
molecule keywords FLAGELLAR ASSOCIATED PROTEIN
total genus 41
structure length 134
sequence length 134
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10243 MIP-T3 Microtubule-binding protein MIP-T3 CH-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.50 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 5fmtA01
5FMTA 2EQOA 5FMUA
chains in the Genus database with same CATH superfamily
2RR8A 2WA5A 2EQOA 1WYRA 2VZIB 2EE7A 5FMTA 3CO1A 3I6XA 1PA7A 1WYNA 3JAKM 2WA7A 2R0OA 2VE7C 2JV9A 1EUVA 3HORA 4EDNA 4DDPA 2VZGB 5J8EA 1V5KA 1WYLA 3KY9A 2VZCA 1WYPA 1SH6A 2WA6A 2D89A 2HKPA 2D88A 1P2XA 1H67A 1MB8A 4TXIA 1BHDA 1QAGA 4Q57B 2DK9A 5A37A 3HOPA 2D87A 3REPB 2IGPA 2WFNA 5FMUA 4EDMA 3F7PA 1AOAA 1UEGA 4Q59A 4LVRA 1UJOA 2E9KA 4LVPA 5A36A 1WYMA 2HL8A 2K3SA 3EAYA 1WJOA 3KMUB 2QJXA 1WYOA 2D85A 3FERA 3HOCA 2WDTA 2K2RA 2WE6A 1WIXA 2VE7A 2EYIA 1VKAA 5BVRA 2YRNA 1WYQA 3JALM 4TXKA 2R8UA 3KMWB 3JARM 1WKUA 4EDLA 3VP7A 2QJZA 1DXXA 4Q58A 5L0OA 2L3GA 4B7LA 1AA2A 1BKRA 2VZDA 5A4BA 2HL9A 1RT8A 1SH5A 1P5SA 1TJTA 1PXYA 5A38A 2D86A 2EYNA
chains in the Genus database with same CATH topology
2HL8A 3EAYA 2VE7C 4LVRA 3VP7A 5FMTA 2WDTA 1EUVA 2IGPA 2EQOA 2HL9A 2WE6A 4LVPA 5FMUA 2VE7A 2HKPA 4DDPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FMT A;  2EQO A;  5FMU A; 
#chains in the Genus database with same CATH topology
 2RR8 A;  2WA5 A;  2EQO A;  1WYR A;  2VZI B;  2EE7 A;  5FMT A;  3CO1 A;  3I6X A;  1PA7 A;  1WYN A;  3JAK M;  2WA7 A;  2R0O A;  2VE7 C;  2JV9 A;  1EUV A;  3HOR A;  4EDN A;  4DDP A;  2VZG B;  5J8E A;  1V5K A;  1WYL A;  3KY9 A;  2VZC A;  1WYP A;  1SH6 A;  2WA6 A;  2D89 A;  2HKP A;  2D88 A;  1P2X A;  1H67 A;  1MB8 A;  4TXI A;  1BHD A;  1QAG A;  4Q57 B;  2DK9 A;  5A37 A;  3HOP A;  2D87 A;  3REP B;  2IGP A;  2WFN A;  5FMU A;  4EDM A;  3F7P A;  1AOA A;  1UEG A;  4Q59 A;  4LVR A;  1UJO A;  2E9K A;  4LVP A;  5A36 A;  1WYM A;  2HL8 A;  2K3S A;  3EAY A;  1WJO A;  3KMU B;  2QJX A;  1WYO A;  2D85 A;  3FER A;  3HOC A;  2WDT A;  2K2R A;  2WE6 A;  1WIX A;  2VE7 A;  2EYI A;  1VKA A;  5BVR A;  2YRN A;  1WYQ A;  3JAL M;  4TXK A;  2R8U A;  3KMW B;  3JAR M;  1WKU A;  4EDL A;  3VP7 A;  2QJZ A;  1DXX A;  4Q58 A;  5L0O A;  2L3G A;  4B7L A;  1AA2 A;  1BKR A;  2VZD A;  5A4B A;  2HL9 A;  1RT8 A;  1SH5 A;  1P5S A;  1TJT A;  1PXY A;  5A38 A;  2D86 A;  2EYN A; 
#chains in the Genus database with same CATH homology
 2HL8 A;  3EAY A;  2VE7 C;  4LVR A;  3VP7 A;  5FMT A;  2WDT A;  1EUV A;  2IGP A;  2EQO A;  2HL9 A;  2WE6 A;  4LVP A;  5FMU A;  2VE7 A;  2HKP A;  4DDP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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