5L0OA

Iqgap1 calponin homology domain fragment (chdf) mutant k161c under oxidizing conditions
Total Genus 60
204060801001201401600102030405060
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
164
structure length
164
Chain Sequence
AEEMDERRRQNVAYEYLCHLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFCLGLAPQIQDLYGKVDFTEEEINNMKTELEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (30-58)TI1 (72-75)TI2 (86-89)3H1 (65-67)TIV1 (67-70)AH2 (76-86)TI3 (87-90)EMPTY3H3 (92-94)AH3 (101-105)TIV2 (95-98)3H4 (130-132)TI4 (97-100)AH4 (111-126)AH5 (136-141)TIV3 (142-145)3H2 (70-72)AH6 (145-162)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Homo sapiens
publication title The IQGAP1 N-Terminus Forms Dimers, and the Dimer Interface Is Required for Binding F-Actin and Calcium-Bound Calmodulin.
pubmed doi rcsb
molecule keywords Ras GTPase-activating-like protein IQGAP1
total genus 60
structure length 164
sequence length 164
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 5l0oA00
1AA2A 1P2XA 5A36A 3CO1A 1WYOA 1WJOA 2EE7A 1TJTA 1V5KA 2YRNA 4TXKA 2L3GA 2D85A 2QJXA 1PXYA 3JAKM 1BKRA 2K2RA 4TXIA 2VZDA 4Q57B 5J8EA 4Q58A 1BHDA 1WYLA 2EYIA 2JV9A 2R8UA 1P5SA 2D87A 1UJOA 4EDNA 1SH6A 1WYNA 1DXXA 2WA6A 4EDLA 3HOCA 2WFNA 5A38A 1WYQA 2VZCA 3JARM 2VZGB 3FERA 1SH5A 2D88A 3REPB 1H67A 1QAGA 2E9KA 1VKAA 2VZIB 3F7PA 2RR8A 1WKUA 3KY9A 5BVRA 4Q59A 3KMWB 2WA7A 2DK9A 1UEGA 2QJZA 2R0OA 1WYMA 4EDMA 2WA5A 5L0OA 1PA7A 3HOPA 5A4BA 2D89A 2K3SA 1RT8A 1AOAA 1MB8A 3JALM 3KMUB 1WYPA 3HORA 5A37A 4B7LA 1WYRA 2D86A 3I6XA 2EYNA 1WIXA
chains in the Genus database with same CATH superfamily
1AA2A 1P2XA 5A36A 3CO1A 1WYOA 1WJOA 2EE7A 1TJTA 1V5KA 2YRNA 4TXKA 2L3GA 2D85A 1EUVA 2QJXA 1PXYA 3JAKM 1BKRA 2K2RA 4TXIA 2VZDA 4Q57B 5J8EA 4Q58A 1BHDA 1WYLA 2EYIA 2JV9A 2R8UA 1P5SA 2D87A 4DDPA 2HKPA 1UJOA 4EDNA 1SH6A 1WYNA 1DXXA 2WA6A 2WDTA 2WE6A 4EDLA 3HOCA 4LVRA 2WFNA 5A38A 1WYQA 2VE7A 2VZCA 3JARM 2VZGB 3FERA 1SH5A 2D88A 3REPB 1H67A 4LVPA 1QAGA 2E9KA 1VKAA 3VP7A 2HL9A 2VZIB 3F7PA 2RR8A 1WKUA 3KY9A 5BVRA 4Q59A 3KMWB 2WA7A 2DK9A 1UEGA 2QJZA 2R0OA 1WYMA 2VE7C 4EDMA 3EAYA 2WA5A 5FMTA 5L0OA 1PA7A 3HOPA 5A4BA 2D89A 2IGPA 2K3SA 1RT8A 1AOAA 2HL8A 1MB8A 3JALM 3KMUB 1WYPA 5FMUA 3HORA 5A37A 4B7LA 1WYRA 2EQOA 2D86A 3I6XA 2EYNA 1WIXA
chains in the Genus database with same CATH topology
1AA2A 1P2XA 5A36A 3CO1A 1WYOA 1WJOA 2EE7A 1TJTA 1V5KA 2YRNA 4TXKA 2L3GA 2D85A 2QJXA 1PXYA 3JAKM 1BKRA 2K2RA 4TXIA 2VZDA 4Q57B 5J8EA 4Q58A 1BHDA 1WYLA 2EYIA 2JV9A 2R8UA 1P5SA 2D87A 1UJOA 4EDNA 1SH6A 1WYNA 1DXXA 2WA6A 4EDLA 3HOCA 2WFNA 5A38A 1WYQA 2VZCA 3JARM 2VZGB 3FERA 1SH5A 2D88A 3REPB 1H67A 1QAGA 2E9KA 1VKAA 2VZIB 3F7PA 2RR8A 1WKUA 3KY9A 5BVRA 4Q59A 3KMWB 2WA7A 2DK9A 1UEGA 2QJZA 2R0OA 1WYMA 4EDMA 2WA5A 5L0OA 1PA7A 3HOPA 5A4BA 2D89A 2K3SA 1RT8A 1AOAA 1MB8A 3JALM 3KMUB 1WYPA 3HORA 5A37A 4B7LA 1WYRA 2D86A 3I6XA 2EYNA 1WIXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AA2 A;  1P2X A;  5A36 A;  3CO1 A;  1WYO A;  1WJO A;  2EE7 A;  1TJT A;  1V5K A;  2YRN A;  4TXK A;  2L3G A;  2D85 A;  2QJX A;  1PXY A;  3JAK M;  1BKR A;  2K2R A;  4TXI A;  2VZD A;  4Q57 B;  5J8E A;  4Q58 A;  1BHD A;  1WYL A;  2EYI A;  2JV9 A;  2R8U A;  1P5S A;  2D87 A;  1UJO A;  4EDN A;  1SH6 A;  1WYN A;  1DXX A;  2WA6 A;  4EDL A;  3HOC A;  2WFN A;  5A38 A;  1WYQ A;  2VZC A;  3JAR M;  2VZG B;  3FER A;  1SH5 A;  2D88 A;  3REP B;  1H67 A;  1QAG A;  2E9K A;  1VKA A;  2VZI B;  3F7P A;  2RR8 A;  1WKU A;  3KY9 A;  5BVR A;  4Q59 A;  3KMW B;  2WA7 A;  2DK9 A;  1UEG A;  2QJZ A;  2R0O A;  1WYM A;  4EDM A;  2WA5 A;  5L0O A;  1PA7 A;  3HOP A;  5A4B A;  2D89 A;  2K3S A;  1RT8 A;  1AOA A;  1MB8 A;  3JAL M;  3KMU B;  1WYP A;  3HOR A;  5A37 A;  4B7L A;  1WYR A;  2D86 A;  3I6X A;  2EYN A;  1WIX A; 
#chains in the Genus database with same CATH topology
 1AA2 A;  1P2X A;  5A36 A;  3CO1 A;  1WYO A;  1WJO A;  2EE7 A;  1TJT A;  1V5K A;  2YRN A;  4TXK A;  2L3G A;  2D85 A;  1EUV A;  2QJX A;  1PXY A;  3JAK M;  1BKR A;  2K2R A;  4TXI A;  2VZD A;  4Q57 B;  5J8E A;  4Q58 A;  1BHD A;  1WYL A;  2EYI A;  2JV9 A;  2R8U A;  1P5S A;  2D87 A;  4DDP A;  2HKP A;  1UJO A;  4EDN A;  1SH6 A;  1WYN A;  1DXX A;  2WA6 A;  2WDT A;  2WE6 A;  4EDL A;  3HOC A;  4LVR A;  2WFN A;  5A38 A;  1WYQ A;  2VE7 A;  2VZC A;  3JAR M;  2VZG B;  3FER A;  1SH5 A;  2D88 A;  3REP B;  1H67 A;  4LVP A;  1QAG A;  2E9K A;  1VKA A;  3VP7 A;  2HL9 A;  2VZI B;  3F7P A;  2RR8 A;  1WKU A;  3KY9 A;  5BVR A;  4Q59 A;  3KMW B;  2WA7 A;  2DK9 A;  1UEG A;  2QJZ A;  2R0O A;  1WYM A;  2VE7 C;  4EDM A;  3EAY A;  2WA5 A;  5FMT A;  5L0O A;  1PA7 A;  3HOP A;  5A4B A;  2D89 A;  2IGP A;  2K3S A;  1RT8 A;  1AOA A;  2HL8 A;  1MB8 A;  3JAL M;  3KMU B;  1WYP A;  5FMU A;  3HOR A;  5A37 A;  4B7L A;  1WYR A;  2EQO A;  2D86 A;  3I6X A;  2EYN A;  1WIX A; 
#chains in the Genus database with same CATH homology
 1AA2 A;  1P2X A;  5A36 A;  3CO1 A;  1WYO A;  1WJO A;  2EE7 A;  1TJT A;  1V5K A;  2YRN A;  4TXK A;  2L3G A;  2D85 A;  2QJX A;  1PXY A;  3JAK M;  1BKR A;  2K2R A;  4TXI A;  2VZD A;  4Q57 B;  5J8E A;  4Q58 A;  1BHD A;  1WYL A;  2EYI A;  2JV9 A;  2R8U A;  1P5S A;  2D87 A;  1UJO A;  4EDN A;  1SH6 A;  1WYN A;  1DXX A;  2WA6 A;  4EDL A;  3HOC A;  2WFN A;  5A38 A;  1WYQ A;  2VZC A;  3JAR M;  2VZG B;  3FER A;  1SH5 A;  2D88 A;  3REP B;  1H67 A;  1QAG A;  2E9K A;  1VKA A;  2VZI B;  3F7P A;  2RR8 A;  1WKU A;  3KY9 A;  5BVR A;  4Q59 A;  3KMW B;  2WA7 A;  2DK9 A;  1UEG A;  2QJZ A;  2R0O A;  1WYM A;  4EDM A;  2WA5 A;  5L0O A;  1PA7 A;  3HOP A;  5A4B A;  2D89 A;  2K3S A;  1RT8 A;  1AOA A;  1MB8 A;  3JAL M;  3KMU B;  1WYP A;  3HOR A;  5A37 A;  4B7L A;  1WYR A;  2D86 A;  3I6X A;  2EYN A;  1WIX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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