The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
19
|
sequence length |
164
|
structure length |
164
|
Chain Sequence |
GENITQPTQQSTQATQRFLIEKFSQEQIGENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFINDKFKQCLEQNKVDRIR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the FHA1 domain of yeast Rad53 and identification of binding sites for both FHA1 and its target protein Rad9
pubmed doi rcsb |
| molecule keywords |
PROTIEN KINASE SPK1
|
| molecule tags |
Transferase
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
19
|
| structure length |
164
|
| sequence length |
164
|
| ec nomenclature |
ec
2.7.12.1: Dual-specificity kinase. |
| pdb deposition date | 2000-10-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00498 | FHA | FHA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 4EGX A; 1LGP A; 3HX1 A; 5DJO A; 2W3O A; 5A8I A; 3UV0 A; 1G3G A; 4H87 A; 2KB3 A; 1K2M A; 2PIE A; 2KB4 A; 1LGQ A; 3VA4 A; 3UN0 A; 1J4L A; 1FHQ A; 2CSW A; 2G1L A; 3I6W A; 3FM8 A; 3VA1 A; 1UJX A; 1J4P A; 1G6G A; 4A0E A; 2FF4 A; 1MZK A; 3GQS A; 4JON A; 3POA A; 3UMZ A; 4D9V A; 2JQJ A; 2EH0 A; 2AFF A; 2BRF A; 2JKD A; 3HUF A; 1K2N A; 1DMZ A; 3VPY A; 2XT9 B; 1GXC A; 2JQI A; 1R21 A; 3MDB A; 4G2S A; 1J4Q A; 1WV3 A; 2FEZ A; 3UNM A; 1J4O A; 2KKL A; 3ELS A; 1K3Q A; 2A0T A; 4EJQ A; 3KT9 A; 2KFU A; 2JQL A; 1UHT A; 1K3N A; 4QCJ A; 5E50 A; 1K3J A; 1QU5 A; 3ELV A; 1FHR A; 3PO8 A; 1YJ5 C; 1YJM A; 3I0N A; 3I6U A; 2JPE A; 1WLN A; 3UOT A; 2LC1 A; 3UNN A; 3OUN A; 1J4K A; 3HUE A; 3I0M A; #chains in the Genus database with same CATH topology 2I2C A; 4EGX A; 1Y3I A; 5BVI A; 1LGP A; 4JIV D; 5JEO A; 3HX1 A; 5DJO A; 3V8Q A; 2W3O A; 5A8I A; 3UV0 A; 1G3G A; 4H87 A; 3V7U A; 2KB3 A; 1K2M A; 2PIE A; 5DHP A; 2KB4 A; 1LGQ A; 3VA4 A; 3UN0 A; 1J4L A; 1FHQ A; 5EJI A; 1Y3H A; 1MJS A; 2CSW A; 1U7V B; 1DEV A; 2G1L A; 1YT5 A; 3V8M A; 5JEJ A; 3I6W A; 1G88 A; 3FM8 A; 1QWT A; 3VA1 A; 1UJX A; 1J4P A; 4V24 A; 1G6G A; 2FF4 A; 1U7V A; 4A0E A; 4DY6 A; 1MZK A; 3GQS A; 3V8P A; 1MR1 A; 4R9P A; 3VZC A; 4JON A; 2JGR A; 3POA A; 1MK2 A; 4WRR A; 1KHX A; 3UMZ A; 3DIT A; 4D9V A; 2JQJ A; 4JIW D; 2EH0 A; 1Z0Z A; 2I2A A; 2AFF A; 2I2D A; 2BRF A; 2JKD A; 3T5P A; 3AFO A; 5EJG A; 3HUF A; 1K2N A; 4L02 A; 1DMZ A; 2I2F A; 1ZOQ A; 3VPY A; 2XT9 B; 1GXC A; 2XXS A; 1YGS A; 1U7F B; 2JQI A; 1R21 A; 2AN1 A; 3MDB A; 3GMJ A; 2I29 A; 4WER A; 2P1R A; 4G2S A; 1U7F A; 1J4Q A; 1WV3 A; 4HAO A; 3V8R A; 2FEZ A; 5DHQ A; 3A77 A; 3UNM A; 1J4O A; 2BON A; 1U0R A; 2QVL A; 2KKL A; 1KHU A; 3ELS A; 1U0T A; 2A0T A; 4EJQ A; 1K3Q A; 3KT9 A; 1SUW A; 2KFU A; 1DD1 A; 2JQL A; 3S40 A; 1J2F A; 1UHT A; 1K3N A; 4QCJ A; 5DHU A; 5E50 A; 2I2B A; 2Q5F A; 1K3J A; 5JEL A; 3VZD A; 4A4Y A; 5EJH A; 5C4V A; 1QU5 A; 3V80 A; 3V7W A; 3ELV A; 3V7Y A; 1FHR A; 3DSH A; 4KU0 D; 3PO8 A; 3V8N A; 1YJ5 C; 1YJM A; 5DHR A; 5DHS A; 3VZB A; 5DHT A; 1Z0U A; 3I0N A; 5JEM A; 3I6U A; 2JPE A; 1WLN A; 5JEK A; 2I1W A; 1Z0S A; 2LC1 A; 3UOT A; 3OUN A; 3PFN A; 3UNN A; 1J4K A; 2QV7 A; 3HUE A; 5EJF A; 5JER A; 3I0M A; #chains in the Genus database with same CATH homology 4EGX A; 5BVI A; 1LGP A; 4JIV D; 5JEO A; 3HX1 A; 5DJO A; 2W3O A; 5A8I A; 3UV0 A; 1G3G A; 4H87 A; 2KB3 A; 1K2M A; 2PIE A; 2KB4 A; 1LGQ A; 3VA4 A; 3UN0 A; 1J4L A; 1FHQ A; 1MJS A; 2CSW A; 1U7V B; 1DEV A; 2G1L A; 5JEJ A; 3I6W A; 1G88 A; 3FM8 A; 1QWT A; 3VA1 A; 1UJX A; 1J4P A; 4V24 A; 1G6G A; 2FF4 A; 1U7V A; 4A0E A; 1MZK A; 3GQS A; 1MR1 A; 4R9P A; 3VZC A; 4JON A; 2JGR A; 3POA A; 1MK2 A; 4WRR A; 1KHX A; 3UMZ A; 3DIT A; 4D9V A; 2JQJ A; 4JIW D; 2EH0 A; 2AFF A; 2BRF A; 2JKD A; 3T5P A; 3HUF A; 1K2N A; 4L02 A; 1DMZ A; 1ZOQ A; 3VPY A; 2XT9 B; 1GXC A; 2XXS A; 1YGS A; 1U7F B; 2JQI A; 1R21 A; 3MDB A; 3GMJ A; 4WER A; 2P1R A; 4G2S A; 1U7F A; 1J4Q A; 1WV3 A; 2FEZ A; 3UNM A; 3A77 A; 1J4O A; 2BON A; 2QVL A; 2KKL A; 1KHU A; 3ELS A; 2A0T A; 4EJQ A; 1K3Q A; 3KT9 A; 2KFU A; 1DD1 A; 2JQL A; 3S40 A; 1J2F A; 1UHT A; 1K3N A; 4QCJ A; 5E50 A; 1K3J A; 5JEL A; 3VZD A; 4A4Y A; 5C4V A; 1QU5 A; 3ELV A; 1FHR A; 3DSH A; 4KU0 D; 3PO8 A; 1YJ5 C; 1YJM A; 3VZB A; 3I0N A; 5JEM A; 3I6U A; 2JPE A; 1WLN A; 5JEK A; 3UOT A; 2LC1 A; 3OUN A; 3UNN A; 1J4K A; 2QV7 A; 3HUE A; 5JER A; 3I0M A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
