The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
21
|
sequence length |
108
|
structure length |
108
|
Chain Sequence |
GSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transport protein
|
| molecule keywords |
TYPE III SECRETION PROTEIN
|
| publication title |
Structure of the Cytoplasmic Domain of Yersinia Pestis Yscd, an Essential Component of the Type III Secretion System
pubmed doi rcsb |
| source organism |
Yersinia pestis
|
| total genus |
21
|
| structure length |
108
|
| sequence length |
108
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-09-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16697 | Yop-YscD_cpl | Inner membrane component of T3SS, cytoplasmic domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 1J4L A; 2KKL A; 2CSW A; 2JQI A; 3VA1 A; 4A0E A; 1DMZ A; 3POA A; 2EH0 A; 3ELV A; 3GQS A; 3MDB A; 3FM8 A; 3ELS A; 1K2M A; 2W3O A; 1K3J A; 1J4Q A; 1YJ5 C; 3OUN A; 4H87 A; 3UMZ A; 1FHQ A; 3KT9 A; 3UV0 A; 2JPE A; 1QU5 A; 3I6U A; 3I0N A; 5DJO A; 2AFF A; 1MZK A; 1G3G A; 3HUE A; 4G2S A; 3PO8 A; 5A8I A; 2G1L A; 1J4O A; 4EGX A; 2PIE A; 2A0T A; 1J4P A; 2KB3 A; 2KB4 A; 1GXC A; 1G6G A; 1UJX A; 3I6W A; 1FHR A; 1UHT A; 3HX1 A; 2BRF A; 5E50 A; 3VPY A; 1LGP A; 2LC1 A; 4EJQ A; 2JQL A; 1WLN A; 1J4K A; 1K3Q A; 2KFU A; 1WV3 A; 1K3N A; 1R21 A; 2JKD A; 2FEZ A; 1K2N A; 3VA4 A; 4QCJ A; 3UOT A; 2XT9 B; 2FF4 A; 3I0M A; 3UN0 A; 4JON A; 3HUF A; 3UNM A; 2JQJ A; 4D9V A; 3UNN A; 1LGQ A; 1YJM A; #chains in the Genus database with same CATH topology 3AFO A; 3V7U A; 1ZOQ A; 1J4L A; 5JEO A; 2KKL A; 4JIV D; 2CSW A; 2Q5F A; 3V8M A; 2I1W A; 1KHX A; 1J2F A; 1Z0U A; 3A77 A; 4JIW D; 5BVI A; 2I29 A; 3VZB A; 1QWT A; 2JQI A; 1MR1 A; 2I2B A; 4WER A; 3VA1 A; 3V8R A; 1YGS A; 4A0E A; 5EJG A; 1DMZ A; 3POA A; 2EH0 A; 3ELV A; 3GQS A; 3MDB A; 2XXS A; 4DY6 A; 3FM8 A; 5EJI A; 3ELS A; 1K2M A; 2JGR A; 2W3O A; 1DD1 A; 1K3J A; 1Y3H A; 1U7F A; 1J4Q A; 1YJ5 C; 2BON A; 3V8P A; 3OUN A; 5DHP A; 4H87 A; 3UMZ A; 1FHQ A; 3PFN A; 3VZD A; 1U7V A; 3KT9 A; 3UV0 A; 2JPE A; 1QU5 A; 3I6U A; 3I0N A; 5DJO A; 2AFF A; 2I2D A; 4L02 A; 1G88 A; 3V7Y A; 1MZK A; 4WRR A; 3HUE A; 1G3G A; 5DHR A; 5EJH A; 4G2S A; 1SUW A; 3PO8 A; 5DHQ A; 5A8I A; 2G1L A; 1J4O A; 4HAO A; 4EGX A; 2PIE A; 1YT5 A; 2A0T A; 3DIT A; 1J4P A; 2KB3 A; 2KB4 A; 3DSH A; 1GXC A; 2P1R A; 3VZC A; 5JEJ A; 1G6G A; 2I2C A; 1UJX A; 3I6W A; 1FHR A; 1UHT A; 1Z0Z A; 3HX1 A; 2BRF A; 3V8Q A; 5E50 A; 1KHU A; 1U7V B; 3VPY A; 4A4Y A; 3V8N A; 1LGP A; 2LC1 A; 4R9P A; 1DEV A; 5JER A; 4EJQ A; 2JQL A; 1WLN A; 1J4K A; 1K3Q A; 2I2F A; 5DHT A; 2KFU A; 1WV3 A; 2I2A A; 2QV7 A; 1R21 A; 3S40 A; 1K3N A; 2JKD A; 3V7W A; 1U0R A; 2FEZ A; 1Y3I A; 3T5P A; 5JEM A; 5JEK A; 4V24 A; 1K2N A; 3VA4 A; 3V80 A; 5DHU A; 5DHS A; 1U7F B; 4QCJ A; 2XT9 B; 3UOT A; 5JEL A; 1MK2 A; 2AN1 A; 4KU0 D; 5EJF A; 3GMJ A; 2FF4 A; 1U0T A; 3I0M A; 3UN0 A; 4JON A; 3HUF A; 3UNM A; 2JQJ A; 4D9V A; 2QVL A; 3UNN A; 5C4V A; 1Z0S A; 1MJS A; 1LGQ A; 1YJM A; #chains in the Genus database with same CATH homology 1ZOQ A; 1J4L A; 5JEO A; 2KKL A; 4JIV D; 2CSW A; 1KHX A; 1J2F A; 3A77 A; 4JIW D; 5BVI A; 3VZB A; 1QWT A; 2JQI A; 1MR1 A; 4WER A; 3VA1 A; 1YGS A; 4A0E A; 1DMZ A; 3POA A; 2EH0 A; 3ELV A; 3GQS A; 3MDB A; 2XXS A; 3FM8 A; 3ELS A; 1K2M A; 2JGR A; 2W3O A; 1DD1 A; 1K3J A; 1U7F A; 1J4Q A; 1YJ5 C; 2BON A; 3OUN A; 4H87 A; 3UMZ A; 1FHQ A; 3VZD A; 1U7V A; 3KT9 A; 3UV0 A; 2JPE A; 1QU5 A; 3I6U A; 3I0N A; 5DJO A; 2AFF A; 4L02 A; 1G88 A; 1MZK A; 4WRR A; 3HUE A; 1G3G A; 4G2S A; 3PO8 A; 5A8I A; 2G1L A; 1J4O A; 4EGX A; 2PIE A; 3DIT A; 2A0T A; 1J4P A; 2KB3 A; 2KB4 A; 3DSH A; 1GXC A; 2P1R A; 3VZC A; 5JEJ A; 1G6G A; 1UJX A; 3I6W A; 1FHR A; 1UHT A; 3HX1 A; 2BRF A; 5E50 A; 1KHU A; 1U7V B; 3VPY A; 4A4Y A; 1LGP A; 2LC1 A; 4R9P A; 1DEV A; 5JER A; 4EJQ A; 2JQL A; 1WLN A; 1J4K A; 1K3Q A; 2KFU A; 1WV3 A; 1K3N A; 2QV7 A; 1R21 A; 3S40 A; 2JKD A; 2FEZ A; 3T5P A; 5JEM A; 5JEK A; 4V24 A; 1K2N A; 3VA4 A; 1U7F B; 4QCJ A; 2XT9 B; 3UOT A; 5JEL A; 1MK2 A; 4KU0 D; 3GMJ A; 2FF4 A; 3I0M A; 3UN0 A; 4JON A; 3HUF A; 3UNM A; 2JQJ A; 4D9V A; 2QVL A; 3UNN A; 5C4V A; 1MJS A; 1LGQ A; 1YJM A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
