The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
5
|
sequence length |
140
|
structure length |
140
|
Chain Sequence |
VFRADFLSELDAPAQAGTESAVSGVEGLPPGLALLVVKRGPNAGSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVNREPVDSAVLANGDEVQIGKFRLVFLTGHKQGEDLEHHHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
Uncharacterized protein Mb1858
|
| publication title |
Solution NMR structure of FHA domain of Mb1858 from Mycobacterium bovis. Northeast Structural Genomics Consortium Target MbR243C (24-155).
rcsb |
| source organism |
Mycobacterium bovis
|
| total genus |
5
|
| structure length |
140
|
| sequence length |
140
|
| ec nomenclature | |
| pdb deposition date | 2009-06-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00498 | FHA | FHA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 1WV3 A; 2JQJ A; 2LC1 A; 2KB4 A; 3UNN A; 1WLN A; 3UOT A; 1R21 A; 3FM8 A; 3GQS A; 4QCJ A; 1G3G A; 2A0T A; 3MDB A; 1K3J A; 4D9V A; 1J4O A; 3VPY A; 3UNM A; 2KB3 A; 3ELV A; 4JON A; 1FHQ A; 3OUN A; 2EH0 A; 4G2S A; 3HX1 A; 1GXC A; 2JQI A; 1FHR A; 1LGQ A; 3I6W A; 1K3N A; 3HUE A; 4EGX A; 3ELS A; 1J4K A; 2CSW A; 3POA A; 2FEZ A; 2JKD A; 3I0M A; 3UV0 A; 1J4L A; 3I6U A; 4A0E A; 4EJQ A; 1K2N A; 2JPE A; 3VA1 A; 2XT9 B; 3I0N A; 2KFU A; 1UHT A; 4H87 A; 2AFF A; 1J4P A; 1K2M A; 1YJ5 C; 1UJX A; 2W3O A; 3KT9 A; 3UN0 A; 2G1L A; 2BRF A; 1G6G A; 1LGP A; 3HUF A; 5E50 A; 1K3Q A; 1J4Q A; 1DMZ A; 3PO8 A; 3UMZ A; 5DJO A; 3VA4 A; 2KKL A; 1YJM A; 2JQL A; 5A8I A; 1QU5 A; 2PIE A; 2FF4 A; 1MZK A; #chains in the Genus database with same CATH topology 4KU0 D; 1WV3 A; 1DEV A; 4HAO A; 5DHR A; 2JQJ A; 2BON A; 2LC1 A; 3V7W A; 2KB4 A; 3UNN A; 5DHS A; 1WLN A; 5EJG A; 2P1R A; 4V24 A; 3A77 A; 1DD1 A; 5EJI A; 3UOT A; 1Y3H A; 2QV7 A; 4JIW D; 2I2D A; 3DIT A; 5DHT A; 1R21 A; 3FM8 A; 3GQS A; 4WRR A; 5BVI A; 3T5P A; 1U7V A; 4QCJ A; 1G3G A; 2QVL A; 5EJF A; 2XXS A; 2A0T A; 3MDB A; 1K3J A; 2I2A A; 1U7F B; 1Y3I A; 5JEM A; 5JER A; 2I2C A; 4L02 A; 2AN1 A; 5DHQ A; 3V7U A; 5C4V A; 1SUW A; 4D9V A; 3VZD A; 4DY6 A; 1J4O A; 1U7V B; 3VPY A; 3UNM A; 1U7F A; 2I1W A; 2KB3 A; 3ELV A; 4JON A; 1FHQ A; 3OUN A; 1YT5 A; 2EH0 A; 3V7Y A; 4G2S A; 1U0T A; 3HX1 A; 1GXC A; 2JQI A; 1FHR A; 1LGQ A; 2I2B A; 3I6W A; 5DHU A; 1K3N A; 3HUE A; 4EGX A; 1ZOQ A; 4R9P A; 5EJH A; 3ELS A; 1J4K A; 1U0R A; 2CSW A; 3POA A; 2FEZ A; 2JKD A; 4WER A; 3V8R A; 4A4Y A; 3I0M A; 3UV0 A; 1J4L A; 3I6U A; 4A0E A; 4EJQ A; 3GMJ A; 3VZC A; 1K2N A; 1MR1 A; 2JPE A; 2I29 A; 3VA1 A; 3AFO A; 3I0N A; 2XT9 B; 2KFU A; 3V8Q A; 1UHT A; 4JIV D; 3DSH A; 4H87 A; 2AFF A; 1J4P A; 1K2M A; 1YJ5 C; 2JGR A; 3VZB A; 1UJX A; 5JEL A; 2W3O A; 3KT9 A; 3UN0 A; 2Q5F A; 2G1L A; 2BRF A; 3S40 A; 1G6G A; 1LGP A; 1Z0S A; 3HUF A; 3V80 A; 5E50 A; 1K3Q A; 2I2F A; 1J4Q A; 3V8P A; 1DMZ A; 3PO8 A; 3UMZ A; 1J2F A; 5DJO A; 3VA4 A; 1QWT A; 1MK2 A; 1MJS A; 1G88 A; 3V8M A; 3V8N A; 2KKL A; 1KHU A; 1Z0U A; 1YGS A; 5JEO A; 5DHP A; 1KHX A; 1YJM A; 2JQL A; 5A8I A; 5JEJ A; 5JEK A; 1QU5 A; 1Z0Z A; 2PIE A; 2FF4 A; 3PFN A; 1MZK A; #chains in the Genus database with same CATH homology 4KU0 D; 1WV3 A; 1DEV A; 2JQJ A; 2BON A; 2LC1 A; 2KB4 A; 3UNN A; 1WLN A; 2P1R A; 4V24 A; 3A77 A; 1DD1 A; 3UOT A; 4JIW D; 2QV7 A; 3DIT A; 1R21 A; 3FM8 A; 3GQS A; 4WRR A; 5BVI A; 3T5P A; 1U7V A; 4QCJ A; 1G3G A; 2QVL A; 2XXS A; 2A0T A; 3MDB A; 1K3J A; 1U7F B; 5JEM A; 5JER A; 4L02 A; 5C4V A; 4D9V A; 3VZD A; 1J4O A; 1U7V B; 3VPY A; 3UNM A; 1U7F A; 2KB3 A; 3ELV A; 4JON A; 1FHQ A; 3OUN A; 2EH0 A; 4G2S A; 3HX1 A; 1GXC A; 2JQI A; 1FHR A; 1LGQ A; 3I6W A; 1K3N A; 3HUE A; 4EGX A; 1ZOQ A; 4R9P A; 3ELS A; 1J4K A; 2CSW A; 3POA A; 2FEZ A; 2JKD A; 4WER A; 4A4Y A; 3I0M A; 3UV0 A; 1J4L A; 3I6U A; 4A0E A; 4EJQ A; 3GMJ A; 3VZC A; 1K2N A; 1MR1 A; 2JPE A; 3VA1 A; 3I0N A; 2XT9 B; 2KFU A; 1UHT A; 4JIV D; 3DSH A; 4H87 A; 2AFF A; 1J4P A; 1K2M A; 1YJ5 C; 2JGR A; 3VZB A; 1UJX A; 5JEL A; 2W3O A; 3KT9 A; 3UN0 A; 2G1L A; 2BRF A; 3S40 A; 1G6G A; 1LGP A; 3HUF A; 5E50 A; 1K3Q A; 1J4Q A; 1DMZ A; 3PO8 A; 3UMZ A; 1J2F A; 5DJO A; 3VA4 A; 1QWT A; 1MK2 A; 1MJS A; 1G88 A; 2KKL A; 1KHU A; 1YGS A; 5JEO A; 1KHX A; 1YJM A; 2JQL A; 5A8I A; 5JEJ A; 5JEK A; 1QU5 A; 2PIE A; 2FF4 A; 1MZK A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
