The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
58
|
sequence length |
239
|
structure length |
239
|
Chain Sequence |
ENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Dna binding protein
|
| molecule keywords |
Interferon regulatory factor 3
|
| publication title |
Crystal structure of IRF-3 reveals mechanism of autoinhibition and virus induced phospho-activation
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
58
|
| structure length |
239
|
| sequence length |
239
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2003-09-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10401 | IRF-3 | Interferon-regulatory factor 3 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 1MR1 A; 3DIT A; 1G88 A; 1U7V B; 1DD1 A; 1U7F A; 1QWT A; 1J2F A; 1YGS A; 1U7F B; 5JER A; 3GMJ A; 1DEV A; 1KHU A; 5C4V A; 1MJS A; 1KHX A; 5BVI A; 1U7V A; 3DSH A; 5JEO A; 5JEJ A; 3A77 A; 1ZOQ A; 5JEK A; 1MK2 A; 4R9P A; 5JEL A; 5JEM A; #chains in the Genus database with same CATH topology 3VZB A; 3V8M A; 5DHT A; 1MR1 A; 1Z0U A; 3DIT A; 1G88 A; 2I29 A; 1G6G A; 1U7F A; 2BRF A; 1J2F A; 3V7Y A; 1UHT A; 3PFN A; 5A8I A; 5DJO A; 2AN1 A; 2I2C A; 4EJQ A; 3AFO A; 3I6W A; 1DEV A; 3UNN A; 1MZK A; 1J4L A; 2Q5F A; 2JQJ A; 4A4Y A; 3V7W A; 1U7V A; 2W3O A; 5JEK A; 3V7U A; 1J4O A; 3ELS A; 3VA1 A; 2I2D A; 2JPE A; 1K3N A; 2I2A A; 4WER A; 1Z0S A; 1Y3H A; 1Y3I A; 3KT9 A; 1U7V B; 1SUW A; 4V24 A; 3OUN A; 1QWT A; 2PIE A; 3UN0 A; 2FF4 A; 2AFF A; 3VPY A; 1UJX A; 5E50 A; 2G1L A; 1K2N A; 2KB3 A; 4A0E A; 1R21 A; 4KU0 D; 3S40 A; 2P1R A; 5EJH A; 1KHU A; 5C4V A; 2I2F A; 3POA A; 1U0T A; 3PO8 A; 3MDB A; 4DY6 A; 3V8Q A; 3I0N A; 1J4K A; 3DSH A; 4HAO A; 1ZOQ A; 4JIW D; 1MK2 A; 1GXC A; 1J4Q A; 4R9P A; 2FEZ A; 4H87 A; 3I6U A; 4JON A; 1DD1 A; 2BON A; 2QVL A; 2I1W A; 1FHQ A; 3HUE A; 5DHS A; 1YGS A; 3VZD A; 5DHP A; 3HUF A; 3T5P A; 3UV0 A; 3V8N A; 3VZC A; 2KB4 A; 2QV7 A; 3V80 A; 2LC1 A; 2A0T A; 1G3G A; 5EJF A; 2JQL A; 5DHQ A; 2I2B A; 1WLN A; 1K3J A; 1K3Q A; 2KFU A; 1MJS A; 1KHX A; 3GQS A; 1LGP A; 1YJ5 C; 5JEO A; 5JEJ A; 3I0M A; 3A77 A; 1YT5 A; 3ELV A; 1J4P A; 5EJI A; 1WV3 A; 1QU5 A; 4JIV D; 5JEL A; 5JEM A; 3UMZ A; 5DHR A; 3FM8 A; 1LGQ A; 4QCJ A; 2JQI A; 1YJM A; 4D9V A; 3V8R A; 2CSW A; 5EJG A; 2JGR A; 2XT9 B; 1U7F B; 2JKD A; 5JER A; 1K2M A; 3UNM A; 3UOT A; 3GMJ A; 4WRR A; 1FHR A; 4EGX A; 1U0R A; 2KKL A; 5BVI A; 4G2S A; 3V8P A; 4L02 A; 3VA4 A; 5DHU A; 1DMZ A; 2EH0 A; 2XXS A; 3HX1 A; 1Z0Z A; #chains in the Genus database with same CATH homology 3VZB A; 1MR1 A; 3DIT A; 1G88 A; 1G6G A; 1U7F A; 2BRF A; 1J2F A; 1UHT A; 5A8I A; 5DJO A; 4EJQ A; 3I6W A; 1DEV A; 3UNN A; 1MZK A; 1J4L A; 2JQJ A; 4A4Y A; 1U7V A; 2W3O A; 5JEK A; 1J4O A; 3ELS A; 3VA1 A; 2JPE A; 1K3N A; 4WER A; 4V24 A; 3KT9 A; 1U7V B; 3OUN A; 1QWT A; 2PIE A; 3UN0 A; 2FF4 A; 2AFF A; 3VPY A; 1UJX A; 5E50 A; 2G1L A; 1K2N A; 2KB3 A; 4A0E A; 1R21 A; 4KU0 D; 3S40 A; 2P1R A; 1KHU A; 5C4V A; 3POA A; 3PO8 A; 3MDB A; 3I0N A; 1J4K A; 3DSH A; 1ZOQ A; 4JIW D; 1MK2 A; 1GXC A; 1J4Q A; 4R9P A; 2FEZ A; 4H87 A; 3I6U A; 4JON A; 1DD1 A; 2BON A; 2QVL A; 1FHQ A; 3HUE A; 1YGS A; 3VZD A; 3T5P A; 3HUF A; 3UV0 A; 3VZC A; 2KB4 A; 2QV7 A; 2LC1 A; 2A0T A; 1G3G A; 2JQL A; 1WLN A; 1K3J A; 1K3Q A; 2KFU A; 1MJS A; 1KHX A; 3GQS A; 1LGP A; 1YJ5 C; 5JEO A; 5JEJ A; 3I0M A; 3A77 A; 3ELV A; 1J4P A; 1WV3 A; 1QU5 A; 4JIV D; 5JEL A; 5JEM A; 3UMZ A; 3FM8 A; 1LGQ A; 4QCJ A; 2JQI A; 1YJM A; 4D9V A; 2CSW A; 2JGR A; 2XT9 B; 1U7F B; 2JKD A; 5JER A; 1K2M A; 3UNM A; 3UOT A; 3GMJ A; 4WRR A; 1FHR A; 4EGX A; 2KKL A; 5BVI A; 4G2S A; 4L02 A; 3VA4 A; 1DMZ A; 2EH0 A; 2XXS A; 3HX1 A;
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