The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
16
|
sequence length |
110
|
structure length |
110
|
Chain Sequence |
GPLGSMSGGFELQPRDGGPRVALAPGETVIGRGPLLGITDKRVSRRHAILEVAGGQLRIKPIHTNPCFYQSSEKSQLLPLKPNLWCYLNPGDSFSMLVDKYIFRILSIPS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Lyase
|
| molecule keywords |
Aprataxin and PNK-like factor
|
| publication title |
Versatility in phospho-dependent molecular recognition of the XRCC1 and XRCC4 DNA-damage scaffolds by aprataxin-family FHA domains.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
16
|
| structure length |
110
|
| sequence length |
110
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase. |
| pdb deposition date | 2015-10-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF17913 | FHA_2 | FHA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 3I0N A; 5E50 A; 1YJ5 C; 1R21 A; 3I0M A; 2JPE A; 1J4P A; 1J4L A; 4JON A; 2JQI A; 2JQL A; 2FEZ A; 3MDB A; 3I6W A; 4G2S A; 4D9V A; 1MZK A; 1GXC A; 1QU5 A; 2EH0 A; 3FM8 A; 1G6G A; 3I6U A; 5DJO A; 1WLN A; 2KKL A; 4EGX A; 3UNN A; 4QCJ A; 3VPY A; 2W3O A; 3ELS A; 2XT9 B; 1YJM A; 1J4Q A; 3KT9 A; 1G3G A; 1UJX A; 5A8I A; 2PIE A; 3PO8 A; 1LGQ A; 3VA1 A; 2BRF A; 2LC1 A; 3UOT A; 1WV3 A; 1DMZ A; 1FHR A; 4EJQ A; 1K2N A; 2FF4 A; 3UV0 A; 3UMZ A; 3HUE A; 1J4K A; 3GQS A; 1K3N A; 3OUN A; 3HUF A; 2KB3 A; 1J4O A; 2KB4 A; 3UNM A; 3VA4 A; 3ELV A; 4H87 A; 2A0T A; 1UHT A; 2JKD A; 1K3J A; 2G1L A; 2CSW A; 3HX1 A; 2JQJ A; 1LGP A; 1K3Q A; 1K2M A; 1FHQ A; 2KFU A; 3UN0 A; 3POA A; 2AFF A; 4A0E A; #chains in the Genus database with same CATH topology 3I0N A; 1U7V A; 5EJF A; 2JGR A; 5E50 A; 1J2F A; 1YJ5 C; 4DY6 A; 4JIW D; 1KHU A; 1R21 A; 3I0M A; 2JPE A; 5DHT A; 1U0T A; 1J4P A; 1J4L A; 4JON A; 1ZOQ A; 2JQI A; 2JQL A; 2FEZ A; 5EJG A; 2I2F A; 3MDB A; 3I6W A; 4G2S A; 4D9V A; 1MZK A; 5JEL A; 1U7F B; 1GXC A; 3VZD A; 1QU5 A; 2EH0 A; 3FM8 A; 1G6G A; 3I6U A; 5DJO A; 1WLN A; 1QWT A; 3V7U A; 2KKL A; 1Z0S A; 4EGX A; 3UNN A; 4QCJ A; 3VPY A; 2W3O A; 3ELS A; 2XT9 B; 1DEV A; 1MK2 A; 3AFO A; 4A4Y A; 5JEM A; 5DHR A; 3GMJ A; 4HAO A; 5JER A; 1YJM A; 1J4Q A; 2Q5F A; 5DHP A; 3V8P A; 3KT9 A; 3V7Y A; 3V8Q A; 1G3G A; 1UJX A; 5A8I A; 2XXS A; 1U0R A; 2I2A A; 2PIE A; 5JEJ A; 3VZB A; 3T5P A; 3PO8 A; 1LGQ A; 3VA1 A; 2BON A; 2BRF A; 2LC1 A; 4KU0 D; 1MR1 A; 2I29 A; 1WV3 A; 3UOT A; 1YGS A; 4JIV D; 5C4V A; 3V80 A; 1DMZ A; 5EJH A; 1Z0Z A; 1U7F A; 5DHS A; 5BVI A; 1FHR A; 4EJQ A; 4WER A; 1K2N A; 2FF4 A; 3S40 A; 2I2C A; 3UV0 A; 3UMZ A; 1U7V B; 1Z0U A; 3DIT A; 3HUE A; 5DHQ A; 5JEK A; 1J4K A; 3GQS A; 4L02 A; 1K3N A; 3PFN A; 3OUN A; 2QVL A; 1Y3I A; 3A77 A; 3HUF A; 3V8M A; 1MJS A; 1Y3H A; 4V24 A; 3VZC A; 3V7W A; 3V8R A; 2P1R A; 2AN1 A; 4R9P A; 1SUW A; 2KB3 A; 1KHX A; 1J4O A; 1YT5 A; 2KB4 A; 4WRR A; 3UNM A; 3VA4 A; 3ELV A; 4H87 A; 2A0T A; 5DHU A; 2I2B A; 5EJI A; 1G88 A; 1UHT A; 5JEO A; 2JKD A; 3DSH A; 1K3J A; 2G1L A; 2I1W A; 2CSW A; 3HX1 A; 2QV7 A; 2JQJ A; 1LGP A; 1K3Q A; 1K2M A; 1FHQ A; 3V8N A; 2KFU A; 3UN0 A; 1DD1 A; 3POA A; 2AFF A; 4A0E A; 2I2D A; #chains in the Genus database with same CATH homology 3I0N A; 1U7V A; 2JGR A; 5E50 A; 1J2F A; 1YJ5 C; 4JIW D; 1KHU A; 1R21 A; 3I0M A; 2JPE A; 1J4P A; 1J4L A; 4JON A; 1ZOQ A; 2JQI A; 2JQL A; 2FEZ A; 3MDB A; 3I6W A; 4G2S A; 4D9V A; 1MZK A; 5JEL A; 1U7F B; 1GXC A; 3VZD A; 1QU5 A; 2EH0 A; 3FM8 A; 1G6G A; 3I6U A; 5DJO A; 1WLN A; 1QWT A; 2KKL A; 4EGX A; 3UNN A; 4QCJ A; 3VPY A; 2W3O A; 3ELS A; 2XT9 B; 1DEV A; 1MK2 A; 4A4Y A; 5JEM A; 3GMJ A; 5JER A; 1YJM A; 1J4Q A; 3KT9 A; 1G3G A; 1UJX A; 5A8I A; 2XXS A; 2PIE A; 5JEJ A; 3VZB A; 3T5P A; 3PO8 A; 1LGQ A; 3VA1 A; 2BON A; 2BRF A; 2LC1 A; 4KU0 D; 1MR1 A; 3UOT A; 1WV3 A; 1YGS A; 4JIV D; 5C4V A; 1DMZ A; 1U7F A; 5BVI A; 1FHR A; 4EJQ A; 4WER A; 1K2N A; 2FF4 A; 3S40 A; 3UV0 A; 3UMZ A; 1U7V B; 3DIT A; 3HUE A; 5JEK A; 1J4K A; 3GQS A; 4L02 A; 1K3N A; 3OUN A; 2QVL A; 3A77 A; 3HUF A; 1MJS A; 3VZC A; 4V24 A; 2P1R A; 4R9P A; 2KB3 A; 1KHX A; 1J4O A; 2KB4 A; 4WRR A; 3UNM A; 3VA4 A; 3ELV A; 4H87 A; 2A0T A; 1G88 A; 1UHT A; 5JEO A; 2JKD A; 3DSH A; 1K3J A; 2G1L A; 2CSW A; 3HX1 A; 2QV7 A; 2JQJ A; 1LGP A; 1K3Q A; 1K2M A; 1FHQ A; 2KFU A; 3UN0 A; 1DD1 A; 3POA A; 2AFF A; 4A0E A;
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