1I8NA

Crystal structure of leech anti-platelet protein
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
89
structure length
89
Chain Sequence
ETITAGNEDCWSKRPGWKLPDNLLTKTEFTSVDECRKMCEESAVEPSCYILQINTETNECYRNNEGDVTWSSLQYDQPNVVQWHLHACS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (50-53)3H1 (57-59)S2 (45-51)S3 (60-62)AH1 (68-77)TIV1 (80-83)O2 (46-124)S4 (86-90)S1 (38-40)Updating...
connected with : NaN
molecule tags Toxin
source organism Haementeria officinalis
publication title The structure of leech anti-platelet protein, an inhibitor of haemostasis.
pubmed doi rcsb
molecule keywords ANTI-PLATELET PROTEIN
total genus 26
structure length 89
sequence length 89
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2001-03-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1i8nA00
3SP8A 2Y8RA 4Z0FA 5I25A 2J8LA 2LL4M 5CT3A 4UAOA 5CT1A 2YILA 3HMSA 1W8KA 4R19A 5CSQA 2QJ4A 1HKYA 5COEA 2Z8WA 1NK1A 1W81A 5CS9A 1I8NA 2QJ2A 4APLA 2Z8VA 3ZLEA 3MKPA 1Z40A 5CS3A 4Z09A 5CS1A 3HMRA 3SRJA 4Z0EA 1BHTA 2F83A 4UV6A 5CS5A 5CP9A 4R1BA 5CT2A 1GMOA 2HGFA 5EOKA 4DURA 2YIPA 1GP9A 4A5TS 1YXEA 4APMA 3HN4A 2YIOA 5EODA 2J8JA 4R1AA 2LL3A 3ZWZA 2Q8BA 3SRIA 4Z0DA 4R1CA 3HMTA 4IUAA 2X2ZA 1GMNA 2K13X 2Q8AA
chains in the Genus database with same CATH superfamily
3SP8A 2Y8RA 4Z0FA 5I25A 2J8LA 2LL4M 5CT3A 4UAOA 5CT1A 2YILA 3HMSA 1W8KA 4R19A 5CSQA 2QJ4A 4YIZA 1HKYA 5COEA 2Z8WA 1NK1A 1W81A 5CS9A 1I8NA 2QJ2A 4APLA 2Z8VA 3ZLEA 3MKPA 1Z40A 5CS3A 4Z09A 5CS1A 3HMRA 3SRJA 4Z0EA 1BHTA 2F83A 4UV6A 5CS5A 5CP9A 4R1BA 2KL5A 1GMOA 2HGFA 5CT2A 5EOKA 4DURA 4YIVA 2YIPA 1GP9A 4A5TS 1YXEA 4APMA 3HN4A 2YIOA 5EODA 2J8JA 4R1AA 2LL3A 3ZWZA 2Q8BA 3SRIA 4Z0DA 4R1CA 3HMTA 4IUAA 2X2ZA 1GMNA 2K13X 2Q8AA
chains in the Genus database with same CATH topology
3SP8A 2Y8RA 4Z0FA 5I25A 2J8LA 2LL4M 5CT3A 4UAOA 5CT1A 2YILA 3HMSA 1W8KA 4R19A 5CSQA 2QJ4A 4YIZA 1HKYA 5COEA 2Z8WA 1NK1A 1W81A 5CS9A 1I8NA 2QJ2A 4APLA 2Z8VA 3ZLEA 3MKPA 1Z40A 5CS3A 4Z09A 5CS1A 3HMRA 3SRJA 4Z0EA 1BHTA 2F83A 4UV6A 5CS5A 5CP9A 4R1BA 2KL5A 1GMOA 2HGFA 5CT2A 5EOKA 4DURA 4YIVA 2YIPA 1GP9A 4A5TS 1YXEA 4APMA 3HN4A 2YIOA 5EODA 2J8JA 4R1AA 2LL3A 3ZWZA 2Q8BA 3SRIA 4Z0DA 4R1CA 3HMTA 4IUAA 2X2ZA 1GMNA 2K13X 2Q8AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SP8 A;  2Y8R A;  4Z0F A;  5I25 A;  2J8L A;  2LL4 M;  5CT3 A;  4UAO A;  5CT1 A;  2YIL A;  3HMS A;  1W8K A;  4R19 A;  5CSQ A;  2QJ4 A;  1HKY A;  5COE A;  2Z8W A;  1NK1 A;  1W81 A;  5CS9 A;  1I8N A;  2QJ2 A;  4APL A;  2Z8V A;  3ZLE A;  3MKP A;  1Z40 A;  5CS3 A;  4Z09 A;  5CS1 A;  3HMR A;  3SRJ A;  4Z0E A;  1BHT A;  2F83 A;  4UV6 A;  5CS5 A;  5CP9 A;  4R1B A;  5CT2 A;  1GMO A;  2HGF A;  5EOK A;  4DUR A;  2YIP A;  1GP9 A;  4A5T S;  1YXE A;  4APM A;  3HN4 A;  2YIO A;  5EOD A;  2J8J A;  4R1A A;  2LL3 A;  3ZWZ A;  2Q8B A;  3SRI A;  4Z0D A;  4R1C A;  3HMT A;  4IUA A;  2X2Z A;  1GMN A;  2K13 X;  2Q8A A; 
#chains in the Genus database with same CATH topology
 3SP8 A;  2Y8R A;  4Z0F A;  5I25 A;  2J8L A;  2LL4 M;  5CT3 A;  4UAO A;  5CT1 A;  2YIL A;  3HMS A;  1W8K A;  4R19 A;  5CSQ A;  2QJ4 A;  4YIZ A;  1HKY A;  5COE A;  2Z8W A;  1NK1 A;  1W81 A;  5CS9 A;  1I8N A;  2QJ2 A;  4APL A;  2Z8V A;  3ZLE A;  3MKP A;  1Z40 A;  5CS3 A;  4Z09 A;  5CS1 A;  3HMR A;  3SRJ A;  4Z0E A;  1BHT A;  2F83 A;  4UV6 A;  5CS5 A;  5CP9 A;  4R1B A;  2KL5 A;  1GMO A;  2HGF A;  5CT2 A;  5EOK A;  4DUR A;  4YIV A;  2YIP A;  1GP9 A;  4A5T S;  1YXE A;  4APM A;  3HN4 A;  2YIO A;  5EOD A;  2J8J A;  4R1A A;  2LL3 A;  3ZWZ A;  2Q8B A;  3SRI A;  4Z0D A;  4R1C A;  3HMT A;  4IUA A;  2X2Z A;  1GMN A;  2K13 X;  2Q8A A; 
#chains in the Genus database with same CATH homology
 3SP8 A;  2Y8R A;  4Z0F A;  5I25 A;  2J8L A;  2LL4 M;  5CT3 A;  4UAO A;  5CT1 A;  2YIL A;  3HMS A;  1W8K A;  4R19 A;  5CSQ A;  2QJ4 A;  4YIZ A;  1HKY A;  5COE A;  2Z8W A;  1NK1 A;  1W81 A;  5CS9 A;  1I8N A;  2QJ2 A;  4APL A;  2Z8V A;  3ZLE A;  3MKP A;  1Z40 A;  5CS3 A;  4Z09 A;  5CS1 A;  3HMR A;  3SRJ A;  4Z0E A;  1BHT A;  2F83 A;  4UV6 A;  5CS5 A;  5CP9 A;  4R1B A;  2KL5 A;  1GMO A;  2HGF A;  5CT2 A;  5EOK A;  4DUR A;  4YIV A;  2YIP A;  1GP9 A;  4A5T S;  1YXE A;  4APM A;  3HN4 A;  2YIO A;  5EOD A;  2J8J A;  4R1A A;  2LL3 A;  3ZWZ A;  2Q8B A;  3SRI A;  4Z0D A;  4R1C A;  3HMT A;  4IUA A;  2X2Z A;  1GMN A;  2K13 X;  2Q8A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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