1I8NA

Crystal structure of leech anti-platelet protein
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
89
structure length
89
Chain Sequence
ETITAGNEDCWSKRPGWKLPDNLLTKTEFTSVDECRKMCEESAVEPSCYILQINTETNECYRNNEGDVTWSSLQYDQPNVVQWHLHACS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of leech anti-platelet protein, an inhibitor of haemostasis.
pubmed doi rcsb
molecule tags Toxin
source organism Haementeria officinalis
molecule keywords ANTI-PLATELET PROTEIN
total genus 26
structure length 89
sequence length 89
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2001-03-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1i8nA00
3ZWZA 1GMOA 3HN4A 1W8KA 4R1AA 3HMRA 4R1CA 5CS5A 4APLA 4DURA 4Z0DA 2Z8VA 1YXEA 3SP8A 1GP9A 5EOKA 3ZLEA 1I8NA 1NK1A 2HGFA 5I25A 4APMA 2QJ4A 5CT1A 4A5TS 2J8JA 2Q8BA 1HKYA 5CS9A 2LL3A 3SRJA 2YIPA 3SRIA 1Z40A 5CT3A 2X2ZA 4Z0FA 4R19A 4R1BA 5CS3A 2F83A 4Z0EA 5CS1A 2YILA 2YIOA 2K13X 2Y8RA 2Z8WA 3HMSA 4UAOA 5CP9A 5CSQA 3MKPA 2LL4M 1GMNA 4IUAA 4UV6A 5CT2A 2J8LA 4Z09A 5COEA 1BHTA 5EODA 2QJ2A 2Q8AA 1W81A 3HMTA
chains in the Genus database with same CATH superfamily
3ZWZA 1GMOA 3HN4A 1W8KA 4R1AA 2KL5A 3HMRA 4R1CA 5CS5A 4APLA 4Z0DA 2Z8VA 1YXEA 4YIVA 3SP8A 1GP9A 5EOKA 3ZLEA 1I8NA 1NK1A 2HGFA 5I25A 4APMA 2QJ4A 5CT1A 4A5TS 2J8JA 2Q8BA 1HKYA 5CS9A 2LL3A 4DURA 3SRJA 2YIPA 3SRIA 1Z40A 5CT3A 2X2ZA 4Z0FA 4R19A 4R1BA 5CS3A 2F83A 4YIZA 4Z0EA 5CS1A 2YILA 2YIOA 2K13X 2Y8RA 2Z8WA 3HMSA 4UAOA 5CP9A 5CSQA 3MKPA 2LL4M 1GMNA 4IUAA 4UV6A 5CT2A 2J8LA 4Z09A 5COEA 1BHTA 5EODA 2QJ2A 2Q8AA 1W81A 3HMTA
chains in the Genus database with same CATH topology
3ZWZA 1GMOA 3HN4A 1W8KA 4R1AA 2KL5A 3HMRA 4R1CA 5CS5A 4APLA 4Z0DA 2Z8VA 1YXEA 4YIVA 3SP8A 1GP9A 5EOKA 3ZLEA 1I8NA 1NK1A 2HGFA 5I25A 4APMA 2QJ4A 5CT1A 4A5TS 2J8JA 2Q8BA 1HKYA 5CS9A 2LL3A 4DURA 3SRJA 2YIPA 3SRIA 1Z40A 5CT3A 2X2ZA 4Z0FA 4R19A 4R1BA 5CS3A 2F83A 4YIZA 4Z0EA 5CS1A 2YILA 2YIOA 2K13X 2Y8RA 2Z8WA 3HMSA 4UAOA 5CP9A 5CSQA 3MKPA 2LL4M 1GMNA 4IUAA 4UV6A 5CT2A 2J8LA 4Z09A 5COEA 1BHTA 5EODA 2QJ2A 2Q8AA 1W81A 3HMTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZWZ A;  1GMO A;  3HN4 A;  1W8K A;  4R1A A;  3HMR A;  4R1C A;  5CS5 A;  4APL A;  4DUR A;  4Z0D A;  2Z8V A;  1YXE A;  3SP8 A;  1GP9 A;  5EOK A;  3ZLE A;  1I8N A;  1NK1 A;  2HGF A;  5I25 A;  4APM A;  2QJ4 A;  5CT1 A;  4A5T S;  2J8J A;  2Q8B A;  1HKY A;  5CS9 A;  2LL3 A;  3SRJ A;  2YIP A;  3SRI A;  1Z40 A;  5CT3 A;  2X2Z A;  4Z0F A;  4R19 A;  4R1B A;  5CS3 A;  2F83 A;  4Z0E A;  5CS1 A;  2YIL A;  2YIO A;  2K13 X;  2Y8R A;  2Z8W A;  3HMS A;  4UAO A;  5CP9 A;  5CSQ A;  3MKP A;  2LL4 M;  1GMN A;  4IUA A;  4UV6 A;  5CT2 A;  2J8L A;  4Z09 A;  5COE A;  1BHT A;  5EOD A;  2QJ2 A;  2Q8A A;  1W81 A;  3HMT A; 
#chains in the Genus database with same CATH topology
 3ZWZ A;  1GMO A;  3HN4 A;  1W8K A;  4R1A A;  2KL5 A;  3HMR A;  4R1C A;  5CS5 A;  4APL A;  4Z0D A;  2Z8V A;  1YXE A;  4YIV A;  3SP8 A;  1GP9 A;  5EOK A;  3ZLE A;  1I8N A;  1NK1 A;  2HGF A;  5I25 A;  4APM A;  2QJ4 A;  5CT1 A;  4A5T S;  2J8J A;  2Q8B A;  1HKY A;  5CS9 A;  2LL3 A;  4DUR A;  3SRJ A;  2YIP A;  3SRI A;  1Z40 A;  5CT3 A;  2X2Z A;  4Z0F A;  4R19 A;  4R1B A;  5CS3 A;  2F83 A;  4YIZ A;  4Z0E A;  5CS1 A;  2YIL A;  2YIO A;  2K13 X;  2Y8R A;  2Z8W A;  3HMS A;  4UAO A;  5CP9 A;  5CSQ A;  3MKP A;  2LL4 M;  1GMN A;  4IUA A;  4UV6 A;  5CT2 A;  2J8L A;  4Z09 A;  5COE A;  1BHT A;  5EOD A;  2QJ2 A;  2Q8A A;  1W81 A;  3HMT A; 
#chains in the Genus database with same CATH homology
 3ZWZ A;  1GMO A;  3HN4 A;  1W8K A;  4R1A A;  2KL5 A;  3HMR A;  4R1C A;  5CS5 A;  4APL A;  4Z0D A;  2Z8V A;  1YXE A;  4YIV A;  3SP8 A;  1GP9 A;  5EOK A;  3ZLE A;  1I8N A;  1NK1 A;  2HGF A;  5I25 A;  4APM A;  2QJ4 A;  5CT1 A;  4A5T S;  2J8J A;  2Q8B A;  1HKY A;  5CS9 A;  2LL3 A;  4DUR A;  3SRJ A;  2YIP A;  3SRI A;  1Z40 A;  5CT3 A;  2X2Z A;  4Z0F A;  4R19 A;  4R1B A;  5CS3 A;  2F83 A;  4YIZ A;  4Z0E A;  5CS1 A;  2YIL A;  2YIO A;  2K13 X;  2Y8R A;  2Z8W A;  3HMS A;  4UAO A;  5CP9 A;  5CSQ A;  3MKP A;  2LL4 M;  1GMN A;  4IUA A;  4UV6 A;  5CT2 A;  2J8L A;  4Z09 A;  5COE A;  1BHT A;  5EOD A;  2QJ2 A;  2Q8A A;  1W81 A;  3HMT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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