1YXEA

Structure and inter-domain interactions of domain ii from the blood stage malarial protein, apical membrane antigen 1
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
140
structure length
140
Chain Sequence
MRGSHHHHHHGSNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and Inter-domain Interactions of Domain II from the Blood-stage Malarial Protein, Apical Membrane Antigen 1.
pubmed doi rcsb
molecule tags Immune system
source organism Plasmodium falciparum
molecule keywords apical membrane antigen 1
total genus 11
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2005-02-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1yxeA01
1Z40A 3SP8A 4Z0EA 2X2ZA 2YILA 4R19A 2J8LA 5EOKA 2LL3A 4IUAA 2J8JA 4R1AA 4UAOA 5CT2A 5CSQA 3HMTA 5CT1A 5I25A 2K13X 3SRIA 4Z0FA 2QJ2A 2QJ4A 2YIOA 4APMA 3SRJA 2Z8VA 5CS5A 3HMRA 4Z09A 1HKYA 1W8KA 3HN4A 1W81A 5EODA 4DURA 3ZLEA 2Q8BA 2Z8WA 4UV6A 5CS3A 2YIPA 1GP9A 5CP9A 2HGFA 2Y8RA 4R1CA 1I8NA 3ZWZA 1BHTA 3HMSA 1GMOA 1GMNA 2Q8AA 5CT3A 1YXEA 4APLA 5COEA 3MKPA 4Z0DA 4A5TS 5CS1A 5CS9A 2F83A 2LL4M 4R1BA 1NK1A
chains in the Genus database with same CATH superfamily
1Z40A 3SP8A 4Z0EA 2X2ZA 2YILA 4R19A 2J8LA 5EOKA 2LL3A 4IUAA 2J8JA 4R1AA 4UAOA 4YIZA 5CT2A 3HMTA 5CSQA 5CT1A 5I25A 2K13X 3SRIA 4Z0FA 2QJ2A 2QJ4A 2YIOA 4APMA 3SRJA 2Z8VA 5CS5A 3HMRA 4Z09A 4YIVA 1HKYA 1W8KA 3HN4A 1W81A 5EODA 4DURA 3ZLEA 2Q8BA 2Z8WA 4UV6A 5CS3A 2YIPA 1GP9A 5CP9A 2HGFA 2Y8RA 4R1CA 1I8NA 3ZWZA 1BHTA 2KL5A 3HMSA 1GMOA 1GMNA 2Q8AA 5CT3A 1YXEA 4APLA 5COEA 3MKPA 4Z0DA 4A5TS 5CS1A 5CS9A 2F83A 2LL4M 4R1BA 1NK1A
chains in the Genus database with same CATH topology
1Z40A 3SP8A 4Z0EA 2X2ZA 2YILA 4R19A 2J8LA 5EOKA 2LL3A 4IUAA 2J8JA 4R1AA 4UAOA 4YIZA 5CT2A 3HMTA 5CSQA 5CT1A 5I25A 2K13X 3SRIA 4Z0FA 2QJ2A 2QJ4A 2YIOA 4APMA 3SRJA 2Z8VA 5CS5A 3HMRA 4Z09A 4YIVA 1HKYA 1W8KA 3HN4A 1W81A 5EODA 4DURA 3ZLEA 2Q8BA 2Z8WA 4UV6A 5CS3A 2YIPA 1GP9A 5CP9A 2HGFA 2Y8RA 4R1CA 1I8NA 3ZWZA 1BHTA 2KL5A 3HMSA 1GMOA 1GMNA 2Q8AA 5CT3A 1YXEA 4APLA 5COEA 3MKPA 4Z0DA 4A5TS 5CS1A 5CS9A 2F83A 2LL4M 4R1BA 1NK1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z40 A;  3SP8 A;  4Z0E A;  2X2Z A;  2YIL A;  4R19 A;  2J8L A;  5EOK A;  2LL3 A;  4IUA A;  2J8J A;  4R1A A;  4UAO A;  5CT2 A;  5CSQ A;  3HMT A;  5CT1 A;  5I25 A;  2K13 X;  3SRI A;  4Z0F A;  2QJ2 A;  2QJ4 A;  2YIO A;  4APM A;  3SRJ A;  2Z8V A;  5CS5 A;  3HMR A;  4Z09 A;  1HKY A;  1W8K A;  3HN4 A;  1W81 A;  5EOD A;  4DUR A;  3ZLE A;  2Q8B A;  2Z8W A;  4UV6 A;  5CS3 A;  2YIP A;  1GP9 A;  5CP9 A;  2HGF A;  2Y8R A;  4R1C A;  1I8N A;  3ZWZ A;  1BHT A;  3HMS A;  1GMO A;  1GMN A;  2Q8A A;  5CT3 A;  1YXE A;  4APL A;  5COE A;  3MKP A;  4Z0D A;  4A5T S;  5CS1 A;  5CS9 A;  2F83 A;  2LL4 M;  4R1B A;  1NK1 A; 
#chains in the Genus database with same CATH topology
 1Z40 A;  3SP8 A;  4Z0E A;  2X2Z A;  2YIL A;  4R19 A;  2J8L A;  5EOK A;  2LL3 A;  4IUA A;  2J8J A;  4R1A A;  4UAO A;  4YIZ A;  5CT2 A;  3HMT A;  5CSQ A;  5CT1 A;  5I25 A;  2K13 X;  3SRI A;  4Z0F A;  2QJ2 A;  2QJ4 A;  2YIO A;  4APM A;  3SRJ A;  2Z8V A;  5CS5 A;  3HMR A;  4Z09 A;  4YIV A;  1HKY A;  1W8K A;  3HN4 A;  1W81 A;  5EOD A;  4DUR A;  3ZLE A;  2Q8B A;  2Z8W A;  4UV6 A;  5CS3 A;  2YIP A;  1GP9 A;  5CP9 A;  2HGF A;  2Y8R A;  4R1C A;  1I8N A;  3ZWZ A;  1BHT A;  2KL5 A;  3HMS A;  1GMO A;  1GMN A;  2Q8A A;  5CT3 A;  1YXE A;  4APL A;  5COE A;  3MKP A;  4Z0D A;  4A5T S;  5CS1 A;  5CS9 A;  2F83 A;  2LL4 M;  4R1B A;  1NK1 A; 
#chains in the Genus database with same CATH homology
 1Z40 A;  3SP8 A;  4Z0E A;  2X2Z A;  2YIL A;  4R19 A;  2J8L A;  5EOK A;  2LL3 A;  4IUA A;  2J8J A;  4R1A A;  4UAO A;  4YIZ A;  5CT2 A;  3HMT A;  5CSQ A;  5CT1 A;  5I25 A;  2K13 X;  3SRI A;  4Z0F A;  2QJ2 A;  2QJ4 A;  2YIO A;  4APM A;  3SRJ A;  2Z8V A;  5CS5 A;  3HMR A;  4Z09 A;  4YIV A;  1HKY A;  1W8K A;  3HN4 A;  1W81 A;  5EOD A;  4DUR A;  3ZLE A;  2Q8B A;  2Z8W A;  4UV6 A;  5CS3 A;  2YIP A;  1GP9 A;  5CP9 A;  2HGF A;  2Y8R A;  4R1C A;  1I8N A;  3ZWZ A;  1BHT A;  2KL5 A;  3HMS A;  1GMO A;  1GMN A;  2Q8A A;  5CT3 A;  1YXE A;  4APL A;  5COE A;  3MKP A;  4Z0D A;  4A5T S;  5CS1 A;  5CS9 A;  2F83 A;  2LL4 M;  4R1B A;  1NK1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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