2YILA

Crystal structure of parasite sarcocystis muris lectin sml-2
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
131
structure length
131
Chain Sequence
QLDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPTCSHFTYNKNSKKCHLKAGAPEFYTYTGDMTGPRSCEHNCSDACWMDGNNPLAVWDYSGQPPALCWAACMGTPGCDLYTFQGMTCKLYSQTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
publication title Pan-Modular Structure of Microneme Protein Sml-2 from Parasite Sarcocystis Muris at 1.95 A Resolution and its Complex with 1-Thio-Beta-D-Galactose.
pubmed doi rcsb
molecule keywords MICRONEME ANTIGEN L2
total genus 36
structure length 131
sequence length 131
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2011-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF14295 PAN_4 PAN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.180 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2yilA02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2yilA01
2Q8BA 4R19A 1GMNA 4Z0DA 2J8JA 3SRIA 2QJ2A 4Z0FA 5CT2A 4UAOA 4Z09A 5CS5A 3HN4A 5EODA 2QJ4A 5COEA 5CS3A 2YIPA 5I25A 3HMSA 1Z40A 2HGFA 1W81A 4Z0EA 2Z8WA 4APLA 1HKYA 3SRJA 4R1AA 4R1BA 1W8KA 5EOKA 2J8LA 2YIOA 2X2ZA 1YXEA 3MKPA 4UV6A 3HMRA 2LL4M 1I8NA 2LL3A 2F83A 5CP9A 5CS1A 5CSQA 2Y8RA 4DURA 5CT1A 3SP8A 4R1CA 2Z8VA 3ZLEA 1GMOA 1BHTA 1NK1A 3HMTA 4A5TS 4APMA 5CS9A 3ZWZA 4IUAA 2Q8AA 2K13X 5CT3A 1GP9A 2YILA
chains in the Genus database with same CATH superfamily
2Q8BA 3LDOA 3D2FB 4AEIA 2MBKA 1I6FA 1ZVGA 1WWNA 2QWQA 2LT8A 2BRZA 4HE7A 3ZWZA 2GL1A 5I25A 3C7NB 3KOYA 1GMNA 4V1DC 5AQVA 1NRAA 1ZFUA 1P00A 1JZAA 4KBOA 2VY6A 5AQUA 1T7BA 5FPNA 3M3ZA 3KOWA 2KJAA 1NGBA 1NGIA 1T7EA 3KOZA 2Z8VA 3E7UX 5AQTA 1VNAA 2QWLA 3A8YA 2KBKA 2YC1C 5EODA 1NGAA 3FE1A 3PSMA 3QFPA 1W81A 2LI7A 2YBRC 3FZFA 4YIVA 4FSVA 5BPNA 3KVGA 1ZUTA 2LKBA 2N69A 2A7TA 3HMSA 1JZBA 5AQHA 1YUWA 1P0AA 2LL4M 1I8NA 3KC6A 1MYNA 5AQWA 1NK1A 1VNBA 5CS9A 2Q8AA 4IUAA 1WT7A 1TI5A 1NGEA 3HN4A 2BUPA 1NGJA 1AHOA 2YIPA 2Z8WA 1ZVEA 4R1BA 1HJOA 3MKPA 4IO8A 4AAZA 2N66A 2LL3A 2YEOA 1WMTA 2NY9X 1QQMA 2YILA 3LDNA 2LN8A 2KHOA 5AR0A 3FZHA 5AQMA 5CS3A 1KAXA 1ICAA 3E7RL 3D2EA 1GPSA 1BA0A 5KK4A 3ZLEA 2KPYA 1BHTA 2KL5A 3SF4D 1GP9A 1NGHA 4UAOA 4H5NA 3L6QA 1KAYA 2E3GA 1HKYA 1I2VA 5EVZA 1W8KA 4HHFA 2YIOA 5AQZA 3LDLA 3IUCA 4UV6A 1ZU3A 1UGLA 3AY9A 4HWIA 5AQQA 3CW4A 3SP8A 5BN8A 1KAZA 1BRZA 4AB0A 3SRIA 3FZMA 1NGFA 2KYQA 4UAEF 1Z40A 2HGFA 4R1AA 1DQ7A 2GMOA 2V7ZA 2J8LA 1YXEA 2N2QA 1CN2A 1MR4A 1SEGA 2F83A 4UAFE 1POIA 1GMOA 1C55A 2B3CA 4R19A 1T0ZA 4H5RA 5AQFA 2QJ2A 2N2RA 5CS5A 2I61A 3D2EB 2E2FA 2QJ4A 5EOKA 2ASCA 2QXLA 1NGDA 5CS1A 5AQXA 4APMA 3JXUA 2QWMA 2K13X 4Z0DA 5AQIA 1ZYWA 3HSCA 1QQOA 1NGGA 3C7NA 2E0HA 3BK3C 1SN1A 5EXWA 3QFUA 2KSKA 2QWOA 4KYPA 3I33A 1S3XA 1LQIA 1B7DA 5CP9A 1NGCA 1NE5A 1CHZA 4UJ0A 3QMLA 2LJ7A 5EY4A 1NPIA 1B3CA 5BN9A 3LDQA 5AQJA 5AQYA 2NY8X 4R1CA 1NH5A 3GKUA 3L56A 4A5TS 2QWPA 5F2RA 1OZZA 2LR3A 1XRSB 3R2VA 5BPLA 1NRBA 5AQPA 2QWNA 1K8BA 1ATSA 2SN3A 5AQOA 3SRJA 5FPMA 3FZLA 2KBJA 3QI7A 1HX1A 5CSQA 2Y8RA 4DURA 1L4VA 1HPMA 2D56A 2KBHA 4H5WA 3FZKA 4UADE 4YIZA 5AQRA 4Z0FA 3KP0A 3L4IA 2LY5A 1I6GA 4CQKA 1SN4A 5EX5A 5F0XA 5COEA 2MN5A 1PTXA 1FH3A 1C56A 1KV0A 1DKGD 1BUPA 3KHWA 1GPTA 5CT1A 1BCGA 3LDPA 5AQLA 3HMTA 3GDQA 2E3FA 2QW9A 2G2KA 1BMRA 4Z09A 2B68A 2KGQA 3D2FA 4Z0EA 5F1XA 1QQNA 2LY6A 1LQHA 1ATRA 2QWRA 5AQNA 2E8AA 1JKZA 1JXCA 1T1TA 3CQXA 2JDQD 2J8JA 5AQKA 5AQGA 5CT2A 3GL1A 2MZ0A 5BPMA 3KOXA 1OMYA 1PX9A 5FPDA 2E88A 2K35A 5CY0A 1LQQA 4FL9A 1SNBA 5CT3A 1N4NA 1BA1A 2ATBA 2LJMA 4H5TA 2M8BB 1I2UA 1AYJA 1DJTA 3ATUA 1PE4A 5AQSA 3KP1A 4APLA 2X2ZA 3ATVA 3HMRA 4GNIA 1BK8A 1T7AA 1ZYVA 5FPEA 4H5VA
chains in the Genus database with same CATH topology
4H5RA 2Q8BA 4R19A 3FZKA 3LDOA 3D2FB 4UADE 5AQFA 5AQRA 2QJ2A 4YIZA 4Z0FA 3L4IA 1NGEA 5CS5A 3HN4A 2BUPA 1NGJA 2E2FA 3D2EB 5EX5A 2QJ4A 5F0XA 5COEA 2YIPA 2MBKA 2MN5A 2Z8WA 4R1BA 1DKGD 5EOKA 1HJOA 1BUPA 3KHWA 3MKPA 2QXLA 4IO8A 2LL3A 1NGDA 5CS1A 5CT1A 3LDPA 2QWQA 5AQLA 5AQXA 3HMTA 3GDQA 4APMA 3JXUA 2QWMA 2QW9A 3ZWZA 2K13X 5I25A 1QQMA 2YILA 3C7NB 4Z0DA 1GMNA 3LDNA 5AQIA 5AQVA 4Z09A 2LN8A 3HSCA 2KHOA 5AR0A 3FZHA 5AQMA 1QQOA 1NGGA 3C7NA 5CS3A 4KBOA 3BK3C 1KAXA 3D2FA 2VY6A 5AQUA 5EXWA 3QFUA 4Z0EA 5FPNA 1QQNA 2QWOA 3M3ZA 5F1XA 3I33A 1S3XA 1ATRA 2QWRA 3D2EA 1NGBA 5CP9A 5AQNA 1NGIA 2E8AA 1BA0A 2Z8VA 3ZLEA 5AQTA 3CQXA 1BHTA 1NGCA 2KL5A 3SF4D 4IUAA 1GP9A 2QWLA 2JDQD 2J8JA 5AQKA 1NGHA 5AQGA 5CT2A 4UAOA 3GL1A 3A8YA 4H5NA 3L6QA 5EODA 1NGAA 3FE1A 1KAYA 3QMLA 3QFPA 1W81A 1HKYA 5EY4A 5BPMA 5EVZA 1W8KA 2YIOA 5AQZA 3LDLA 3IUCA 4UV6A 3FZFA 5BN9A 3LDQA 5AQJA 5AQYA 4HWIA 3AY9A 5AQQA 5FPDA 2E88A 3CW4A 4R1CA 5BN8A 2K35A 4YIVA 3SP8A 4FSVA 1KAZA 3L56A 4A5TS 2QWPA 4FL9A 5F2RA 5CT3A 3SRIA 3R2VA 1BA1A 5BPLA 5BPNA 3KVGA 4H5TA 3FZMA 1NGFA 5AQPA 3ATUA 2QWNA 5AQSA 3HMSA 4UAEF 1Z40A 2HGFA 4APLA 1ATSA 5AQOA 3SRJA 4R1AA 2GMOA 2V7ZA 5FPMA 5AQHA 2J8LA 1YUWA 1YXEA 3FZLA 3ATVA 2X2ZA 3HMRA 3QI7A 2LL4M 1I8NA 1HX1A 2F83A 5CSQA 4UAFE 2Y8RA 4DURA 4GNIA 1POIA 3KC6A 5AQWA 1GMOA 1HPMA 1NK1A 2D56A 5FPEA 4H5VA 5CS9A 2Q8AA 4H5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q8B A;  4R19 A;  1GMN A;  4Z0D A;  2J8J A;  3SRI A;  2QJ2 A;  4Z0F A;  5CT2 A;  4UAO A;  4Z09 A;  5CS5 A;  3HN4 A;  5EOD A;  2QJ4 A;  5COE A;  5CS3 A;  2YIP A;  5I25 A;  3HMS A;  1Z40 A;  2HGF A;  1W81 A;  4Z0E A;  2Z8W A;  4APL A;  1HKY A;  3SRJ A;  4R1A A;  4R1B A;  1W8K A;  5EOK A;  2J8L A;  2YIO A;  2X2Z A;  1YXE A;  3MKP A;  4UV6 A;  3HMR A;  2LL4 M;  1I8N A;  2LL3 A;  2F83 A;  5CP9 A;  5CS1 A;  5CSQ A;  2Y8R A;  4DUR A;  5CT1 A;  3SP8 A;  4R1C A;  2Z8V A;  3ZLE A;  1GMO A;  1BHT A;  1NK1 A;  3HMT A;  4A5T S;  4APM A;  5CS9 A;  3ZWZ A;  4IUA A;  2Q8A A;  2K13 X;  5CT3 A;  1GP9 A;  2YIL A; 
#chains in the Genus database with same CATH topology
 2Q8B A;  3LDO A;  3D2F B;  4AEI A;  2MBK A;  1I6F A;  1ZVG A;  1WWN A;  2QWQ A;  2LT8 A;  2BRZ A;  4HE7 A;  3ZWZ A;  2GL1 A;  5I25 A;  3C7N B;  3KOY A;  1GMN A;  4V1D C;  5AQV A;  1NRA A;  1ZFU A;  1P00 A;  1JZA A;  4KBO A;  2VY6 A;  5AQU A;  1T7B A;  5FPN A;  3M3Z A;  3KOW A;  2KJA A;  1NGB A;  1NGI A;  1T7E A;  3KOZ A;  2Z8V A;  3E7U X;  5AQT A;  1VNA A;  2QWL A;  3A8Y A;  2KBK A;  2YC1 C;  5EOD A;  1NGA A;  3FE1 A;  3PSM A;  3QFP A;  1W81 A;  2LI7 A;  2YBR C;  3FZF A;  4YIV A;  4FSV A;  5BPN A;  3KVG A;  1ZUT A;  2LKB A;  2N69 A;  2A7T A;  3HMS A;  1JZB A;  5AQH A;  1YUW A;  1P0A A;  2LL4 M;  1I8N A;  3KC6 A;  1MYN A;  5AQW A;  1NK1 A;  1VNB A;  5CS9 A;  2Q8A A;  4IUA A;  1WT7 A;  1TI5 A;  1NGE A;  3HN4 A;  2BUP A;  1NGJ A;  1AHO A;  2YIP A;  2Z8W A;  1ZVE A;  4R1B A;  1HJO A;  3MKP A;  4IO8 A;  4AAZ A;  2N66 A;  2LL3 A;  2YEO A;  1WMT A;  2NY9 X;  1QQM A;  2YIL A;  3LDN A;  2LN8 A;  2KHO A;  5AR0 A;  3FZH A;  5AQM A;  5CS3 A;  1KAX A;  1ICA A;  3E7R L;  3D2E A;  1GPS A;  1BA0 A;  5KK4 A;  3ZLE A;  2KPY A;  1BHT A;  2KL5 A;  3SF4 D;  1GP9 A;  1NGH A;  4UAO A;  4H5N A;  3L6Q A;  1KAY A;  2E3G A;  1HKY A;  1I2V A;  5EVZ A;  1W8K A;  4HHF A;  2YIO A;  5AQZ A;  3LDL A;  3IUC A;  4UV6 A;  1ZU3 A;  1UGL A;  3AY9 A;  4HWI A;  5AQQ A;  3CW4 A;  3SP8 A;  5BN8 A;  1KAZ A;  1BRZ A;  4AB0 A;  3SRI A;  3FZM A;  1NGF A;  2KYQ A;  4UAE F;  1Z40 A;  2HGF A;  4R1A A;  1DQ7 A;  2GMO A;  2V7Z A;  2J8L A;  1YXE A;  2N2Q A;  1CN2 A;  1MR4 A;  1SEG A;  2F83 A;  4UAF E;  1POI A;  1GMO A;  1C55 A;  2B3C A;  4R19 A;  1T0Z A;  4H5R A;  5AQF A;  2QJ2 A;  2N2R A;  5CS5 A;  2I61 A;  3D2E B;  2E2F A;  2QJ4 A;  5EOK A;  2ASC A;  2QXL A;  1NGD A;  5CS1 A;  5AQX A;  4APM A;  3JXU A;  2QWM A;  2K13 X;  4Z0D A;  5AQI A;  1ZYW A;  3HSC A;  1QQO A;  1NGG A;  3C7N A;  2E0H A;  3BK3 C;  1SN1 A;  5EXW A;  3QFU A;  2KSK A;  2QWO A;  4KYP A;  3I33 A;  1S3X A;  1LQI A;  1B7D A;  5CP9 A;  1NGC A;  1NE5 A;  1CHZ A;  4UJ0 A;  3QML A;  2LJ7 A;  5EY4 A;  1NPI A;  1B3C A;  5BN9 A;  3LDQ A;  5AQJ A;  5AQY A;  2NY8 X;  4R1C A;  1NH5 A;  3GKU A;  3L56 A;  4A5T S;  2QWP A;  5F2R A;  1OZZ A;  2LR3 A;  1XRS B;  3R2V A;  5BPL A;  1NRB A;  5AQP A;  2QWN A;  1K8B A;  1ATS A;  2SN3 A;  5AQO A;  3SRJ A;  5FPM A;  3FZL A;  2KBJ A;  3QI7 A;  1HX1 A;  5CSQ A;  2Y8R A;  4DUR A;  1L4V A;  1HPM A;  2D56 A;  2KBH A;  4H5W A;  3FZK A;  4UAD E;  4YIZ A;  5AQR A;  4Z0F A;  3KP0 A;  3L4I A;  2LY5 A;  1I6G A;  4CQK A;  1SN4 A;  5EX5 A;  5F0X A;  5COE A;  2MN5 A;  1PTX A;  1FH3 A;  1C56 A;  1KV0 A;  1DKG D;  1BUP A;  3KHW A;  1GPT A;  5CT1 A;  1BCG A;  3LDP A;  5AQL A;  3HMT A;  3GDQ A;  2E3F A;  2QW9 A;  2G2K A;  1BMR A;  4Z09 A;  2B68 A;  2KGQ A;  3D2F A;  4Z0E A;  5F1X A;  1QQN A;  2LY6 A;  1LQH A;  1ATR A;  2QWR A;  5AQN A;  2E8A A;  1JKZ A;  1JXC A;  1T1T A;  3CQX A;  2JDQ D;  2J8J A;  5AQK A;  5AQG A;  5CT2 A;  3GL1 A;  2MZ0 A;  5BPM A;  3KOX A;  1OMY A;  1PX9 A;  5FPD A;  2E88 A;  2K35 A;  5CY0 A;  1LQQ A;  4FL9 A;  1SNB A;  5CT3 A;  1N4N A;  1BA1 A;  2ATB A;  2LJM A;  4H5T A;  2M8B B;  1I2U A;  1AYJ A;  1DJT A;  3ATU A;  1PE4 A;  5AQS A;  3KP1 A;  4APL A;  2X2Z A;  3ATV A;  3HMR A;  4GNI A;  1BK8 A;  1T7A A;  1ZYV A;  5FPE A;  4H5V A; 
#chains in the Genus database with same CATH homology
 4H5R A;  2Q8B A;  4R19 A;  3FZK A;  3LDO A;  3D2F B;  4UAD E;  5AQF A;  5AQR A;  2QJ2 A;  4YIZ A;  4Z0F A;  3L4I A;  1NGE A;  5CS5 A;  3HN4 A;  2BUP A;  1NGJ A;  2E2F A;  3D2E B;  5EX5 A;  2QJ4 A;  5F0X A;  5COE A;  2YIP A;  2MBK A;  2MN5 A;  2Z8W A;  4R1B A;  1DKG D;  5EOK A;  1HJO A;  1BUP A;  3KHW A;  3MKP A;  2QXL A;  4IO8 A;  2LL3 A;  1NGD A;  5CS1 A;  5CT1 A;  3LDP A;  2QWQ A;  5AQL A;  5AQX A;  3HMT A;  3GDQ A;  4APM A;  3JXU A;  2QWM A;  2QW9 A;  3ZWZ A;  2K13 X;  5I25 A;  1QQM A;  2YIL A;  3C7N B;  4Z0D A;  1GMN A;  3LDN A;  5AQI A;  5AQV A;  4Z09 A;  2LN8 A;  3HSC A;  2KHO A;  5AR0 A;  3FZH A;  5AQM A;  1QQO A;  1NGG A;  3C7N A;  5CS3 A;  4KBO A;  3BK3 C;  1KAX A;  3D2F A;  2VY6 A;  5AQU A;  5EXW A;  3QFU A;  4Z0E A;  5FPN A;  1QQN A;  2QWO A;  3M3Z A;  5F1X A;  3I33 A;  1S3X A;  1ATR A;  2QWR A;  3D2E A;  1NGB A;  5CP9 A;  5AQN A;  1NGI A;  2E8A A;  1BA0 A;  2Z8V A;  3ZLE A;  5AQT A;  3CQX A;  1BHT A;  1NGC A;  2KL5 A;  3SF4 D;  4IUA A;  1GP9 A;  2QWL A;  2JDQ D;  2J8J A;  5AQK A;  1NGH A;  5AQG A;  5CT2 A;  4UAO A;  3GL1 A;  3A8Y A;  4H5N A;  3L6Q A;  5EOD A;  1NGA A;  3FE1 A;  1KAY A;  3QML A;  3QFP A;  1W81 A;  1HKY A;  5EY4 A;  5BPM A;  5EVZ A;  1W8K A;  2YIO A;  5AQZ A;  3LDL A;  3IUC A;  4UV6 A;  3FZF A;  5BN9 A;  3LDQ A;  5AQJ A;  5AQY A;  4HWI A;  3AY9 A;  5AQQ A;  5FPD A;  2E88 A;  3CW4 A;  4R1C A;  5BN8 A;  2K35 A;  4YIV A;  3SP8 A;  4FSV A;  1KAZ A;  3L56 A;  4A5T S;  2QWP A;  4FL9 A;  5F2R A;  5CT3 A;  3SRI A;  3R2V A;  1BA1 A;  5BPL A;  5BPN A;  3KVG A;  4H5T A;  3FZM A;  1NGF A;  5AQP A;  3ATU A;  2QWN A;  5AQS A;  3HMS A;  4UAE F;  1Z40 A;  2HGF A;  4APL A;  1ATS A;  5AQO A;  3SRJ A;  4R1A A;  2GMO A;  2V7Z A;  5FPM A;  5AQH A;  2J8L A;  1YUW A;  1YXE A;  3FZL A;  3ATV A;  2X2Z A;  3HMR A;  3QI7 A;  2LL4 M;  1I8N A;  1HX1 A;  2F83 A;  5CSQ A;  4UAF E;  2Y8R A;  4DUR A;  4GNI A;  1POI A;  3KC6 A;  5AQW A;  1GMO A;  1HPM A;  1NK1 A;  2D56 A;  5FPE A;  4H5V A;  5CS9 A;  2Q8A A;  4H5W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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