2YILA

Crystal structure of parasite sarcocystis muris lectin sml-2
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
131
structure length
131
Chain Sequence
b'QLDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPTCSHFTYNKNSKKCHLKAGAPEFYTYTGDMTGPRSCEHNCSDACWMDGNNPLAVWDYSGQPPALCWAACMGTPGCDLYTFQGMTCKLYSQTS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Pan-Modular Structure of Microneme Protein Sml-2 from Parasite Sarcocystis Muris at 1.95 A Resolution and its Complex with 1-Thio-Beta-D-Galactose.
pubmed doi rcsb
molecule keywords MICRONEME ANTIGEN L2
molecule tags Sugar binding protein
total genus 36
structure length 131
sequence length 131
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2011-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF14295 PAN_4 PAN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.180 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2yilA02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2yilA01
3HN4A 1NK1A 5CS5A 1W8KA 2Z8VA 2J8LA 4Z0DA 1I8NA 4Z09A 3ZWZA 2YIPA 2Y8RA 4UV6A 2J8JA 5CS1A 2HGFA 1Z40A 2QJ2A 4IUAA 5EODA 2LL3A 1BHTA 4APLA 2Z8WA 2YIOA 5CT3A 5I25A 1W81A 1GP9A 3HMSA 5CS9A 4DURA 2YILA 2LL4M 2X2ZA 4UAOA 3SRIA 1GMOA 5CP9A 5CS3A 4R1AA 1GMNA 2F83A 2Q8AA 4R1BA 5COEA 5CT2A 5CSQA 3HMTA 5EOKA 3ZLEA 2K13X 2QJ4A 3SP8A 4Z0FA 3SRJA 5CT1A 4R1CA 1HKYA 3HMRA 3MKPA 2Q8BA 4R19A 4APMA 4Z0EA 4A5TS 1YXEA
chains in the Genus database with same CATH superfamily
1S3XA 3BK3C 3QFUA 2LY6A 1ZUTA 5BN9A 5BPMA 2QWRA 3FE1A 2VY6A 1NGAA 2LN8A 1YUWA 1K8BA 1LQQA 2KJAA 5AQLA 1B7DA 2Z8VA 3ZWZA 1ZU3A 2KGQA 2MBKA 5FPMA 2N66A 4HHFA 4IUAA 1GPSA 3E7UX 2KPYA 1B3CA 2LI7A 3KP0A 4UADE 3SP8A 3L56A 1NGJA 3A8YA 1GPTA 3LDPA 2QWQA 5BPLA 2LT8A 4AEIA 2ASCA 1C56A 4HWIA 4APLA 3FZFA 1VNBA 5FPNA 3C7NA 2YBRC 1GMNA 2M8BB 3D2FA 1NGDA 5EXWA 5AQWA 2E8AA 2E3GA 1BMRA 2Q8BA 3D2EB 2E88A 3ATUA 1I8NA 5AQUA 2QWOA 1ICAA 1ZYWA 2SN3A 1T7AA 2BRZA 5I25A 1ZFUA 5CY0A 2QWMA 1NE5A 4R1BA 1BA0A 3I33A 2QJ4A 5EY4A 1I6FA 1WWNA 1NGHA 5FPDA 2MZ0A 4KBOA 1WT7A 5F1XA 1ATRA 1DJTA 1BUPA 1AHOA 1XRSB 2YEOA 1W81A 2ATBA 1P00A 4IO8A 1GMOA 4YIVA 2Q8AA 2N2QA 5AQOA 1OMYA 3E7RL 3HMRA 3FZKA 5EX5A 2A7TA 4UV6A 2QWPA 1KAXA 2JDQD 2Z8WA 1POIA 4H5VA 3GL1A 3L4IA 1ZYVA 3GKUA 1HPMA 2B68A 1KAYA 2KSKA 3FZHA 2KBKA 1SN4A 5BN8A 3MKPA 4APMA 4Z0EA 2K35A 1ZVEA 1W8KA 1T7BA 1BCGA 2LJMA 1CHZA 1Z40A 5EODA 4H5TA 5AQTA 2V7ZA 3D2EA 5CT3A 1JZAA 5AQPA 2KL5A 5CS3A 1T0ZA 1T7EA 1VNAA 1QQMA 2I61A 1BK8A 1LQHA 3LDNA 5AQIA 2GL1A 1NGCA 3KOWA 1JZBA 5KK4A 1PE4A 1OZZA 5FPEA 5EVZA 3CQXA 2YIPA 4UAFE 3KOXA 2GMOA 5CS9A 3KHWA 1NGEA 5COEA 1TI5A 5AQFA 4UJ0A 4R1CA 1HKYA 1PX9A 5CS5A 3IUCA 1NH5A 4H5NA 2D56A 2HGFA 5AQYA 1C55A 1HJOA 1L4VA 3HMSA 3KOYA 2KHOA 3ATVA 4R1AA 5F2RA 5CSQA 3HMTA 5EOKA 1NGIA 5AQXA 3QFPA 1CN2A 4FSVA 3GDQA 1LQIA 4H5RA 1NRAA 3HN4A 1NPIA 4Z0DA 3KOZA 1I2VA 3LDQA 2G2KA 4AAZA 1DKGD 2X2ZA 4UAOA 3CW4A 4FL9A 2MN5A 4Z0FA 2LKBA 3SRJA 1BA1A 3FZMA 3JXUA 2QXLA 2YC1C 3C7NB 2J8LA 2NY8X 4H5WA 5AQSA 1KV0A 3LDLA 5AQHA 3R2VA 1SN1A 4YIZA 2QWNA 5AQJA 4HE7A 5AQQA 4UAEF 1HX1A 4GNIA 2J8JA 1I6GA 1SNBA 1BRZA 5AQVA 3LDOA 1GP9A 2KYQA 3KC6A 1P0AA 3ZLEA 2LY5A 1NGGA 1MR4A 1WMTA 1YXEA 1NK1A 2N69A 4Z09A 2LL3A 1JXCA 2B3CA 4AB0A 5AR0A 2LR3A 3SF4D 1SEGA 1UGLA 2Y8RA 1ZVGA 5AQZA 2N2RA 2QJ2A 3FZLA 2QWLA 2YIOA 2QW9A 5BPNA 4DURA 1NGFA 2LL4M 3SRIA 3L6QA 5CP9A 3QI7A 2K13X 3QMLA 2KBHA 2E3FA 5AQGA 1AYJA 1ATSA 3KVGA 5AQNA 4A5TS 3PSMA 5F0XA 5AQKA 1NGBA 2E2FA 5CS1A 1JKZA 1NRBA 1KAZA 2E0HA 2NY9X 2YILA 2BUPA 5AQRA 3M3ZA 5CT2A 2F83A 1DQ7A 2KBJA 1N4NA 3KP1A 4R19A 3AY9A 1I2UA 1QQOA 1PTXA 5AQMA 2LJ7A 1BHTA 3D2FB 3HSCA 4CQKA 1QQNA 1T1TA 1MYNA 1FH3A 4V1DC 5CT1A 4KYPA
chains in the Genus database with same CATH topology
1S3XA 1NK1A 1ATRA 5CS5A 3IUCA 3BK3C 4Z09A 4H5NA 2D56A 3QFUA 1BUPA 2HGFA 5AQYA 2LL3A 5BN9A 1HJOA 5BPMA 1W81A 3HMSA 2QWRA 3FE1A 4IO8A 2VY6A 1GMOA 2KHOA 3ATVA 4YIVA 4R1AA 2Q8AA 1NGAA 5F2RA 2LN8A 5AR0A 3HMTA 5AQOA 1NGIA 5CSQA 5EOKA 5AQXA 1YUWA 3QFPA 4FSVA 3SF4D 3GDQA 3HMRA 4H5RA 3FZKA 5AQLA 5EX5A 3HN4A 2Z8VA 4Z0DA 3ZWZA 2Y8RA 4UV6A 3LDQA 2MBKA 5FPMA 5AQZA 2QWPA 2QJ2A 1KAXA 3FZLA 4IUAA 2QWLA 2JDQD 2Z8WA 2YIOA 1POIA 2QW9A 4H5VA 5BPNA 4DURA 1NGFA 2LL4M 1DKGD 3GL1A 2X2ZA 3CW4A 3L4IA 4UAOA 3SRIA 3L6QA 5CP9A 4FL9A 3QI7A 2K13X 2MN5A 4Z0FA 4UADE 3SP8A 3QMLA 1HPMA 1BA1A 3SRJA 5AQGA 1KAYA 3FZMA 3L56A 1NGJA 3FZHA 3MKPA 5BN8A 3A8YA 3JXUA 1ATSA 4APMA 3KVGA 5AQNA 4Z0EA 4A5TS 2K35A 2QXLA 3C7NB 3LDPA 5F0XA 2QWQA 1W8KA 5BPLA 2J8LA 5AQKA 1NGBA 2E2FA 4HWIA 5CS1A 1Z40A 5EODA 4H5TA 5AQTA 4APLA 2V7ZA 3FZFA 1KAZA 3D2EA 5FPNA 5CT3A 4H5WA 5AQSA 2YILA 2BUPA 3C7NA 5AQPA 2KL5A 5AQRA 3M3ZA 5CS3A 5CT2A 1GMNA 3LDLA 5AQHA 2F83A 1QQMA 3R2VA 4YIZA 2QWNA 3D2FA 1NGDA 3LDNA 5AQIA 5AQJA 1NGCA 5EXWA 5AQWA 2E8AA 5AQQA 4UAEF 2Q8BA 4R19A 3D2EB 3AY9A 2E88A 1HX1A 3ATUA 5FPEA 1QQOA 4GNIA 5EVZA 3CQXA 5AQUA 1I8NA 2YIPA 4UAFE 5AQMA 2QWOA 2J8JA 1BHTA 3D2FB 3HSCA 5AQVA 5I25A 3LDOA 2GMOA 1GP9A 5CS9A 3KC6A 3KHWA 1QQNA 2QWMA 1NGEA 4R1BA 5COEA 1BA0A 3ZLEA 3I33A 2QJ4A 1NGGA 5AQFA 5EY4A 5CT1A 4R1CA 1NGHA 5FPDA 1HKYA 4KBOA 1YXEA 5F1XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HN4 A;  1NK1 A;  5CS5 A;  1W8K A;  2Z8V A;  2J8L A;  4Z0D A;  1I8N A;  4Z09 A;  3ZWZ A;  2YIP A;  2Y8R A;  4UV6 A;  2J8J A;  5CS1 A;  2HGF A;  1Z40 A;  2QJ2 A;  4IUA A;  5EOD A;  2LL3 A;  1BHT A;  4APL A;  2Z8W A;  2YIO A;  5CT3 A;  5I25 A;  1W81 A;  1GP9 A;  3HMS A;  5CS9 A;  4DUR A;  2YIL A;  2LL4 M;  2X2Z A;  4UAO A;  3SRI A;  1GMO A;  5CP9 A;  5CS3 A;  4R1A A;  1GMN A;  2F83 A;  2Q8A A;  4R1B A;  5COE A;  5CT2 A;  5CSQ A;  3HMT A;  5EOK A;  3ZLE A;  2K13 X;  2QJ4 A;  3SP8 A;  4Z0F A;  3SRJ A;  5CT1 A;  4R1C A;  1HKY A;  3HMR A;  3MKP A;  2Q8B A;  4R19 A;  4APM A;  4Z0E A;  4A5T S;  1YXE A; 
#chains in the Genus database with same CATH topology
 1S3X A;  3BK3 C;  3QFU A;  2LY6 A;  1ZUT A;  5BN9 A;  5BPM A;  2QWR A;  3FE1 A;  2VY6 A;  1NGA A;  2LN8 A;  1YUW A;  1K8B A;  1LQQ A;  2KJA A;  5AQL A;  1B7D A;  2Z8V A;  3ZWZ A;  1ZU3 A;  2KGQ A;  2MBK A;  5FPM A;  2N66 A;  4HHF A;  4IUA A;  1GPS A;  3E7U X;  2KPY A;  1B3C A;  2LI7 A;  3KP0 A;  4UAD E;  3SP8 A;  3L56 A;  1NGJ A;  3A8Y A;  1GPT A;  3LDP A;  2QWQ A;  5BPL A;  2LT8 A;  4AEI A;  2ASC A;  1C56 A;  4HWI A;  4APL A;  3FZF A;  1VNB A;  5FPN A;  3C7N A;  2YBR C;  1GMN A;  2M8B B;  3D2F A;  1NGD A;  5EXW A;  5AQW A;  2E8A A;  2E3G A;  1BMR A;  2Q8B A;  3D2E B;  2E88 A;  3ATU A;  1I8N A;  5AQU A;  2QWO A;  1ICA A;  1ZYW A;  2SN3 A;  1T7A A;  2BRZ A;  5I25 A;  1ZFU A;  5CY0 A;  2QWM A;  1NE5 A;  4R1B A;  1BA0 A;  3I33 A;  2QJ4 A;  5EY4 A;  1I6F A;  1WWN A;  1NGH A;  5FPD A;  2MZ0 A;  4KBO A;  1WT7 A;  5F1X A;  1ATR A;  1DJT A;  1BUP A;  1AHO A;  1XRS B;  2YEO A;  1W81 A;  2ATB A;  1P00 A;  4IO8 A;  1GMO A;  4YIV A;  2Q8A A;  2N2Q A;  5AQO A;  1OMY A;  3E7R L;  3HMR A;  3FZK A;  5EX5 A;  2A7T A;  4UV6 A;  2QWP A;  1KAX A;  2JDQ D;  2Z8W A;  1POI A;  4H5V A;  3GL1 A;  3L4I A;  1ZYV A;  3GKU A;  1HPM A;  2B68 A;  1KAY A;  2KSK A;  3FZH A;  2KBK A;  1SN4 A;  5BN8 A;  3MKP A;  4APM A;  4Z0E A;  2K35 A;  1ZVE A;  1W8K A;  1T7B A;  1BCG A;  2LJM A;  1CHZ A;  1Z40 A;  5EOD A;  4H5T A;  5AQT A;  2V7Z A;  3D2E A;  5CT3 A;  1JZA A;  5AQP A;  2KL5 A;  5CS3 A;  1T0Z A;  1T7E A;  1VNA A;  1QQM A;  2I61 A;  1BK8 A;  1LQH A;  3LDN A;  5AQI A;  2GL1 A;  1NGC A;  3KOW A;  1JZB A;  5KK4 A;  1PE4 A;  1OZZ A;  5FPE A;  5EVZ A;  3CQX A;  2YIP A;  4UAF E;  3KOX A;  2GMO A;  5CS9 A;  3KHW A;  1NGE A;  5COE A;  1TI5 A;  5AQF A;  4UJ0 A;  4R1C A;  1HKY A;  1PX9 A;  5CS5 A;  3IUC A;  1NH5 A;  4H5N A;  2D56 A;  2HGF A;  5AQY A;  1C55 A;  1HJO A;  1L4V A;  3HMS A;  3KOY A;  2KHO A;  3ATV A;  4R1A A;  5F2R A;  5CSQ A;  3HMT A;  5EOK A;  1NGI A;  5AQX A;  3QFP A;  1CN2 A;  4FSV A;  3GDQ A;  1LQI A;  4H5R A;  1NRA A;  3HN4 A;  1NPI A;  4Z0D A;  3KOZ A;  1I2V A;  3LDQ A;  2G2K A;  4AAZ A;  1DKG D;  2X2Z A;  4UAO A;  3CW4 A;  4FL9 A;  2MN5 A;  4Z0F A;  2LKB A;  3SRJ A;  1BA1 A;  3FZM A;  3JXU A;  2QXL A;  2YC1 C;  3C7N B;  2J8L A;  2NY8 X;  4H5W A;  5AQS A;  1KV0 A;  3LDL A;  5AQH A;  3R2V A;  1SN1 A;  4YIZ A;  2QWN A;  5AQJ A;  4HE7 A;  5AQQ A;  4UAE F;  1HX1 A;  4GNI A;  2J8J A;  1I6G A;  1SNB A;  1BRZ A;  5AQV A;  3LDO A;  1GP9 A;  2KYQ A;  3KC6 A;  1P0A A;  3ZLE A;  2LY5 A;  1NGG A;  1MR4 A;  1WMT A;  1YXE A;  1NK1 A;  2N69 A;  4Z09 A;  2LL3 A;  1JXC A;  2B3C A;  4AB0 A;  5AR0 A;  2LR3 A;  3SF4 D;  1SEG A;  1UGL A;  2Y8R A;  1ZVG A;  5AQZ A;  2N2R A;  2QJ2 A;  3FZL A;  2QWL A;  2YIO A;  2QW9 A;  5BPN A;  4DUR A;  1NGF A;  2LL4 M;  3SRI A;  3L6Q A;  5CP9 A;  3QI7 A;  2K13 X;  3QML A;  2KBH A;  2E3F A;  5AQG A;  1AYJ A;  1ATS A;  3KVG A;  5AQN A;  4A5T S;  3PSM A;  5F0X A;  5AQK A;  1NGB A;  2E2F A;  5CS1 A;  1JKZ A;  1NRB A;  1KAZ A;  2E0H A;  2NY9 X;  2YIL A;  2BUP A;  5AQR A;  3M3Z A;  5CT2 A;  2F83 A;  1DQ7 A;  2KBJ A;  1N4N A;  3KP1 A;  4R19 A;  3AY9 A;  1I2U A;  1QQO A;  1PTX A;  5AQM A;  2LJ7 A;  1BHT A;  3D2F B;  3HSC A;  4CQK A;  1QQN A;  1T1T A;  1MYN A;  1FH3 A;  4V1D C;  5CT1 A;  4KYP A; 
#chains in the Genus database with same CATH homology
 1S3X A;  1NK1 A;  1ATR A;  5CS5 A;  3IUC A;  3BK3 C;  4Z09 A;  4H5N A;  2D56 A;  3QFU A;  1BUP A;  2HGF A;  5AQY A;  2LL3 A;  5BN9 A;  1HJO A;  5BPM A;  1W81 A;  3HMS A;  2QWR A;  3FE1 A;  4IO8 A;  2VY6 A;  1GMO A;  2KHO A;  3ATV A;  4YIV A;  4R1A A;  2Q8A A;  1NGA A;  5F2R A;  2LN8 A;  5AR0 A;  3HMT A;  5AQO A;  1NGI A;  5CSQ A;  5EOK A;  5AQX A;  1YUW A;  3QFP A;  4FSV A;  3SF4 D;  3GDQ A;  3HMR A;  4H5R A;  3FZK A;  5AQL A;  5EX5 A;  3HN4 A;  2Z8V A;  4Z0D A;  3ZWZ A;  2Y8R A;  4UV6 A;  3LDQ A;  2MBK A;  5FPM A;  5AQZ A;  2QWP A;  2QJ2 A;  1KAX A;  3FZL A;  4IUA A;  2QWL A;  2JDQ D;  2Z8W A;  2YIO A;  1POI A;  2QW9 A;  4H5V A;  5BPN A;  4DUR A;  1NGF A;  2LL4 M;  1DKG D;  3GL1 A;  2X2Z A;  3CW4 A;  3L4I A;  4UAO A;  3SRI A;  3L6Q A;  5CP9 A;  4FL9 A;  3QI7 A;  2K13 X;  2MN5 A;  4Z0F A;  4UAD E;  3SP8 A;  3QML A;  1HPM A;  1BA1 A;  3SRJ A;  5AQG A;  1KAY A;  3FZM A;  3L56 A;  1NGJ A;  3FZH A;  3MKP A;  5BN8 A;  3A8Y A;  3JXU A;  1ATS A;  4APM A;  3KVG A;  5AQN A;  4Z0E A;  4A5T S;  2K35 A;  2QXL A;  3C7N B;  3LDP A;  5F0X A;  2QWQ A;  1W8K A;  5BPL A;  2J8L A;  5AQK A;  1NGB A;  2E2F A;  4HWI A;  5CS1 A;  1Z40 A;  5EOD A;  4H5T A;  5AQT A;  4APL A;  2V7Z A;  3FZF A;  1KAZ A;  3D2E A;  5FPN A;  5CT3 A;  4H5W A;  5AQS A;  2YIL A;  2BUP A;  3C7N A;  5AQP A;  2KL5 A;  5AQR A;  3M3Z A;  5CS3 A;  5CT2 A;  1GMN A;  3LDL A;  5AQH A;  2F83 A;  1QQM A;  3R2V A;  4YIZ A;  2QWN A;  3D2F A;  1NGD A;  3LDN A;  5AQI A;  5AQJ A;  1NGC A;  5EXW A;  5AQW A;  2E8A A;  5AQQ A;  4UAE F;  2Q8B A;  4R19 A;  3D2E B;  3AY9 A;  2E88 A;  1HX1 A;  3ATU A;  5FPE A;  1QQO A;  4GNI A;  5EVZ A;  3CQX A;  5AQU A;  1I8N A;  2YIP A;  4UAF E;  5AQM A;  2QWO A;  2J8J A;  1BHT A;  3D2F B;  3HSC A;  5AQV A;  5I25 A;  3LDO A;  2GMO A;  1GP9 A;  5CS9 A;  3KC6 A;  3KHW A;  1QQN A;  2QWM A;  1NGE A;  4R1B A;  5COE A;  1BA0 A;  3ZLE A;  3I33 A;  2QJ4 A;  1NGG A;  5AQF A;  5EY4 A;  5CT1 A;  4R1C A;  1NGH A;  5FPD A;  1HKY A;  4KBO A;  1YXE A;  5F1X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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