The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
102
|
sequence length |
399
|
structure length |
392
|
Chain Sequence |
SGNPFQANVEMKTFMERFNLTHHHQSGIYVDLGQDKEVDGTLYREPAGLCPIWGKHIELQQPDRPPYRNNFLEDVPTEKEYKQSGNPLPGGFNLNFVTPSGQRISPFPMELLEKNSNIKASTDLGRCAEFAFKTVAMDKNNKATKYRYPFVYDSKKRLCHILYVSMQLMEGKKYCSVKGEPPDLTWYCFKPRKSVTENHHLIYGSAYVGENPDAFISKCPNQALRGYRFGVWKKGRCLDYTELTDTVIERVESKAQCWVKTFENDGVASDQPDQPHSGGVGRNYGFYYVDTTGEGKCALSDQVPDCLVSDSAAVSYTAAGSLSEETPNFIIPSNPSVTPPTPETALQCTADKFPDSFGACDVQACKRQKTSCVGGQIQSTSVDCTADEQNEC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
An Extended Surface Loop on Toxoplasma gondii Apical Membrane Antigen 1 (AMA1) Governs Ligand Binding Selectivity.
pubmed doi rcsb |
| molecule keywords |
Apical membrane antigen AMA1
|
| molecule tags |
Immune system
|
| source organism |
Toxoplasma gondii me49
|
| total genus |
102
|
| structure length |
392
|
| sequence length |
399
|
| chains with identical sequence |
C, E
|
| ec nomenclature | |
| pdb deposition date | 2015-03-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02430 | AMA-1 | Apical membrane antigen 1 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Complement Module; domain 1 | Complement Module; domain 1 | ||
| Alpha Beta | 3-Layer(bba) Sandwich | Hepatocyte Growth Factor | Hepatocyte Growth Factor |
#chains in the Genus database with same CATH superfamily 3ZLE A; 4YIZ A; 2Y8R A; 2Y8S A; 4YIV A; 3ZLD A; 2Y8T A; 4APL A; 2X2Z A; #chains in the Genus database with same CATH topology 1OK1 A; 2F83 A; 4Z09 A; 1QUB A; 5CT3 A; 2ZYC A; 3IX0 A; 1GP9 A; 5CSQ A; 1GHQ B; 4Z0F A; 1TPM A; 3HMS A; 1TPG A; 2RL0 A; 2WII C; 3VWO A; 5DN5 A; 1H2Q P; 1VVC A; 2J8J A; 3SRJ A; 2CG7 A; 2CG6 A; 2LL3 A; 5I25 A; 1H2P P; 2Y8R A; 2Q8A A; 2RKZ A; 2QJ4 A; 2Y8T A; 3CAL A; 3GXE A; 3ZLD A; 3HMR A; 3HMT A; 4A5T S; 1VVD A; 5CT1 A; 2KL5 A; 4PZ5 A; 4R1A A; 3SP8 A; 1E8B A; 5I0Q B; 3INB C; 3NJA A; 1ELV A; 2XRB A; 5CT2 A; 4UV6 A; 2KRI A; 3ZD1 A; 1E5G A; 2MCZ A; 5CP9 A; 2Y8S A; 4ONT D; 3M7P A; 3TVJ A; 2JGW A; 1YXE A; 3NFP I; 5CS5 A; 1HFI A; 2K13 X; 3HN4 A; 4AYE A; 1QO6 A; 4Z0E A; 2W81 A; 1GPZ A; 4J38 B; 1SS2 A; 3OP8 A; 1ZJK A; 1H04 P; 2EHF A; 3ERB A; 4K12 A; 2G7I A; 2XWJ I; 4PO7 A; 5CS3 A; 1CKL A; 1OK3 A; 4APM A; 1OJV A; 1PPQ A; 2Z8V A; 2YRA A; 4AYD A; 2V8E A; 1W81 A; 3EJH A; 2QY0 A; 5CS1 A; 4KKD A; 5EOK A; 1E88 A; 2RLQ A; 2XWB F; 4WJG 2; 4YNX A; 2EC3 A; 5HYT B; 5CS9 A; 1MD8 A; 1U5M A; 3FGT A; 4C16 A; 1Q3X A; 3OXU D; 4LOS A; 1GMO A; 4YIV A; 3SRI A; 3WSX A; 1C1Z A; 4AYM A; 2IZ4 A; 2B5I D; 4B2R A; 1O9A A; 2BZM A; 4BWC A; 4F4O C; 4DJZ A; 4ZH1 D; 1NK1 A; 3IU3 I; 3OED C; 2W80 A; 2XQW C; 3O8E B; 2ERJ A; 1HFH A; 1OJY A; 2QJ2 A; 4N7E A; 1LY2 A; 3T5O A; 1OK2 A; 3RJ3 D; 3KZJ A; 1OJW A; 4MSL A; 5HYU B; 4APL A; 2HGF A; 2YIL A; 3SW0 X; 4DUR A; 5DN4 A; 2I2L A; 2Z8W A; 4R19 A; 3ZD2 A; 1GMN A; 4FXG G; 4MUC A; 2JGX A; 2UWN A; 1G4F A; 3CI0 J; 4IUA A; 4LOT A; 4AYI A; 4R1B A; 1MD7 A; 2XRD A; 1H03 P; 3K3T A; 3KXV A; 5HZP B; 3MKP A; 1RLH A; 1OK9 A; 3R62 A; 4Z0D A; 3F6K A; 3L89 M; 2RKY A; 2RLP A; 4IGD A; 3ZRZ A; 2O39 C; 4R1C A; 1Z92 B; 2YBY A; 1TPN A; 2IZ3 A; 3GOV A; 3MQL A; 4A5W B; 1FBR A; 1Z40 A; 3FGR A; 1G4G A; 2J8L A; 2X2Z A; 2YIO A; 2JRA A; 2MCY A; 1NWV A; 4CSY A; 4YIZ A; 2LOJ A; 1QGB A; 2A55 A; 3WSY A; 4B2S A; 1BHT A; 1GKG A; 1W8K A; 4UAO A; 2YIP A; 2Q8B A; 1UOT P; 4JHS A; 1HCC A; 2CKU A; 3ZLE A; 1GKN A; 5COE A; 1HKY A; 3ZWZ A; 2LL4 M; 5EOD A; 1SRZ A; 5JPM G; 5HYP A; 1I8N A; 2KMS A; 5FO8 C; #chains in the Genus database with same CATH homology 2F83 A; 4Z09 A; 5CT3 A; 1GP9 A; 5CSQ A; 4Z0F A; 3HMS A; 2J8J A; 3SRJ A; 2LL3 A; 5I25 A; 2Y8R A; 2Q8A A; 2QJ4 A; 3ZLD A; 2Y8T A; 3HMR A; 3HMT A; 4A5T S; 5CT1 A; 2KL5 A; 4R1A A; 3SP8 A; 3NJA A; 5CT2 A; 4UV6 A; 5CP9 A; 2Y8S A; 1YXE A; 5CS5 A; 2K13 X; 3HN4 A; 4Z0E A; 4PO7 A; 5CS3 A; 4APM A; 2Z8V A; 1W81 A; 5CS1 A; 5EOK A; 5CS9 A; 3FGT A; 1GMO A; 4YIV A; 3SRI A; 3WSX A; 4BWC A; 1NK1 A; 2QJ2 A; 4N7E A; 4DUR A; 4MSL A; 2YIL A; 2HGF A; 4APL A; 2I2L A; 2Z8W A; 4R19 A; 1GMN A; 4IUA A; 4R1B A; 3F6K A; 4R1C A; 1Z40 A; 3FGR A; 2J8L A; 2X2Z A; 2YIO A; 3MKP A; 1BHT A; 4YIZ A; 3WSY A; 4UAO A; 1W8K A; 2YIP A; 2Q8B A; 3ZLE A; 5COE A; 1HKY A; 3ZWZ A; 2LL4 M; 5EOD A; 1I8N A; 4Z0D A;
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