4R1AA

Crystal structure of fvo strain plasmodium falciparum ama1
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
331
structure length
265
Chain Sequence
NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIESNTTFLKPVATLKDGGFAFPPTNPLISPMTLNGMRDFYKNNEYVKNLDELTLCSRHAGNMNNYKYPAVYDYNDKKCHILYIAAQENFCFRPAKDKLFENYTYLSKNVVDNWEEVCPRKNLENAKFGLWVDGNCEDIPHVNEFSANDLFECNKLVFELSASDQPRYKSHGKGYNWGNYNRETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Apical membrane antigen 1
publication title Structure and Dynamics of Apical Membrane Antigen 1 from Plasmodium falciparum FVO.
pubmed doi rcsb
source organism Plasmodium falciparum fcr-3/gambia
molecule tags Cell invasion
total genus 75
structure length 265
sequence length 331
ec nomenclature
pdb deposition date 2014-08-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 4r1aA01
5CT3A 2X2ZA 4R19A 1Z40A 2YILA 4R1AA 1BHTA 1HKYA 4DURA 3SRIA 1GMOA 4IUAA 3HMRA 5CS5A 3HMSA 3HMTA 2QJ4A 2LL3A 5CS3A 2Q8AA 2Z8WA 5CT2A 4Z0EA 4APLA 4A5TS 4Z09A 1W81A 2HGFA 5EOKA 3SRJA 3ZLEA 4Z0FA 4R1BA 3SP8A 4APMA 1I8NA 5COEA 3MKPA 2J8LA 4R1CA 5CS9A 4UV6A 4Z0DA 4UAOA 3HN4A 1GP9A 2Y8RA 5CSQA 2Z8VA 2F83A 5EODA 2K13X 2YIOA 2Q8BA 2YIPA 5CT1A 2LL4M 2J8JA 1NK1A 5CS1A 1W8KA 3ZWZA 5I25A 1YXEA 1GMNA 2QJ2A 5CP9A
chains in the Genus database with same CATH superfamily
5CT3A 2X2ZA 4R19A 1Z40A 2YILA 4R1AA 4YIVA 1BHTA 1HKYA 4DURA 3SRIA 1GMOA 4IUAA 3HMRA 5CS5A 3HMSA 4YIZA 2KL5A 3HMTA 2QJ4A 2LL3A 5CS3A 2Q8AA 2Z8WA 5CT2A 4Z0EA 4APLA 4A5TS 4Z09A 1W81A 2HGFA 5EOKA 3SRJA 3ZLEA 4Z0FA 4R1BA 3SP8A 4APMA 1I8NA 5COEA 3MKPA 2J8LA 4R1CA 5CS9A 4UV6A 4Z0DA 4UAOA 3HN4A 1GP9A 2Y8RA 5CSQA 2Z8VA 2F83A 5EODA 2K13X 2YIOA 2Q8BA 2YIPA 5CT1A 2LL4M 2J8JA 1NK1A 5CS1A 1W8KA 3ZWZA 5I25A 1YXEA 1GMNA 2QJ2A 5CP9A
chains in the Genus database with same CATH topology
5CT3A 2X2ZA 4R19A 1Z40A 2YILA 4R1AA 4YIVA 1BHTA 1HKYA 4DURA 3SRIA 1GMOA 4IUAA 3HMRA 5CS5A 3HMSA 4YIZA 2KL5A 3HMTA 2QJ4A 2LL3A 5CS3A 2Q8AA 2Z8WA 5CT2A 4Z0EA 4APLA 4A5TS 4Z09A 1W81A 2HGFA 5EOKA 3SRJA 3ZLEA 4Z0FA 4R1BA 3SP8A 4APMA 1I8NA 5COEA 3MKPA 2J8LA 4R1CA 5CS9A 4UV6A 4Z0DA 4UAOA 3HN4A 1GP9A 2Y8RA 5CSQA 2Z8VA 2F83A 5EODA 2K13X 2YIOA 2Q8BA 2YIPA 5CT1A 2LL4M 2J8JA 1NK1A 5CS1A 1W8KA 3ZWZA 5I25A 1YXEA 1GMNA 2QJ2A 5CP9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CT3 A;  2X2Z A;  4R19 A;  1Z40 A;  2YIL A;  4R1A A;  1BHT A;  1HKY A;  4DUR A;  3SRI A;  1GMO A;  4IUA A;  3HMR A;  5CS5 A;  3HMS A;  3HMT A;  2QJ4 A;  2LL3 A;  5CS3 A;  2Q8A A;  2Z8W A;  5CT2 A;  4Z0E A;  4APL A;  4A5T S;  4Z09 A;  1W81 A;  2HGF A;  5EOK A;  3SRJ A;  3ZLE A;  4Z0F A;  4R1B A;  3SP8 A;  4APM A;  1I8N A;  5COE A;  3MKP A;  2J8L A;  4R1C A;  5CS9 A;  4UV6 A;  4Z0D A;  4UAO A;  3HN4 A;  1GP9 A;  2Y8R A;  5CSQ A;  2Z8V A;  2F83 A;  5EOD A;  2K13 X;  2YIO A;  2Q8B A;  2YIP A;  5CT1 A;  2LL4 M;  2J8J A;  1NK1 A;  5CS1 A;  1W8K A;  3ZWZ A;  5I25 A;  1YXE A;  1GMN A;  2QJ2 A;  5CP9 A; 
#chains in the Genus database with same CATH topology
 5CT3 A;  2X2Z A;  4R19 A;  1Z40 A;  2YIL A;  4R1A A;  4YIV A;  1BHT A;  1HKY A;  4DUR A;  3SRI A;  1GMO A;  4IUA A;  3HMR A;  5CS5 A;  3HMS A;  4YIZ A;  2KL5 A;  3HMT A;  2QJ4 A;  2LL3 A;  5CS3 A;  2Q8A A;  2Z8W A;  5CT2 A;  4Z0E A;  4APL A;  4A5T S;  4Z09 A;  1W81 A;  2HGF A;  5EOK A;  3SRJ A;  3ZLE A;  4Z0F A;  4R1B A;  3SP8 A;  4APM A;  1I8N A;  5COE A;  3MKP A;  2J8L A;  4R1C A;  5CS9 A;  4UV6 A;  4Z0D A;  4UAO A;  3HN4 A;  1GP9 A;  2Y8R A;  5CSQ A;  2Z8V A;  2F83 A;  5EOD A;  2K13 X;  2YIO A;  2Q8B A;  2YIP A;  5CT1 A;  2LL4 M;  2J8J A;  1NK1 A;  5CS1 A;  1W8K A;  3ZWZ A;  5I25 A;  1YXE A;  1GMN A;  2QJ2 A;  5CP9 A; 
#chains in the Genus database with same CATH homology
 5CT3 A;  2X2Z A;  4R19 A;  1Z40 A;  2YIL A;  4R1A A;  4YIV A;  1BHT A;  1HKY A;  4DUR A;  3SRI A;  1GMO A;  4IUA A;  3HMR A;  5CS5 A;  3HMS A;  4YIZ A;  2KL5 A;  3HMT A;  2QJ4 A;  2LL3 A;  5CS3 A;  2Q8A A;  2Z8W A;  5CT2 A;  4Z0E A;  4APL A;  4A5T S;  4Z09 A;  1W81 A;  2HGF A;  5EOK A;  3SRJ A;  3ZLE A;  4Z0F A;  4R1B A;  3SP8 A;  4APM A;  1I8N A;  5COE A;  3MKP A;  2J8L A;  4R1C A;  5CS9 A;  4UV6 A;  4Z0D A;  4UAO A;  3HN4 A;  1GP9 A;  2Y8R A;  5CSQ A;  2Z8V A;  2F83 A;  5EOD A;  2K13 X;  2YIO A;  2Q8B A;  2YIP A;  5CT1 A;  2LL4 M;  2J8J A;  1NK1 A;  5CS1 A;  1W8K A;  3ZWZ A;  5I25 A;  1YXE A;  1GMN A;  2QJ2 A;  5CP9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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