1YXEA

Structure and inter-domain interactions of domain ii from the blood stage malarial protein, apical membrane antigen 1
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
140
structure length
140
Chain Sequence
MRGSHHHHHHGSNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and Inter-domain Interactions of Domain II from the Blood-stage Malarial Protein, Apical Membrane Antigen 1.
pubmed doi rcsb
molecule tags Immune system
source organism Plasmodium falciparum
molecule keywords apical membrane antigen 1
total genus 11
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2005-02-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1yxeA01
3ZWZA 1GMOA 3HN4A 1W8KA 4R1AA 3HMRA 4R1CA 5CS5A 4APLA 4DURA 4Z0DA 2Z8VA 1YXEA 3SP8A 1GP9A 5EOKA 3ZLEA 1I8NA 1NK1A 2HGFA 5I25A 4APMA 2QJ4A 5CT1A 4A5TS 2J8JA 2Q8BA 1HKYA 5CS9A 2LL3A 3SRJA 2YIPA 3SRIA 1Z40A 5CT3A 2X2ZA 4Z0FA 4R19A 4R1BA 5CS3A 2F83A 4Z0EA 5CS1A 2YILA 2YIOA 2K13X 2Y8RA 2Z8WA 3HMSA 4UAOA 5CP9A 5CSQA 3MKPA 2LL4M 1GMNA 4IUAA 4UV6A 5CT2A 2J8LA 4Z09A 5COEA 1BHTA 5EODA 2QJ2A 2Q8AA 1W81A 3HMTA
chains in the Genus database with same CATH superfamily
3ZWZA 1GMOA 3HN4A 1W8KA 4R1AA 2KL5A 3HMRA 4R1CA 5CS5A 4APLA 4Z0DA 2Z8VA 1YXEA 4YIVA 3SP8A 1GP9A 5EOKA 3ZLEA 1I8NA 1NK1A 2HGFA 5I25A 4APMA 2QJ4A 5CT1A 4A5TS 2J8JA 2Q8BA 1HKYA 5CS9A 2LL3A 4DURA 3SRJA 2YIPA 3SRIA 1Z40A 5CT3A 2X2ZA 4Z0FA 4R19A 4R1BA 5CS3A 2F83A 4YIZA 4Z0EA 5CS1A 2YILA 2YIOA 2K13X 2Y8RA 2Z8WA 3HMSA 4UAOA 5CP9A 5CSQA 3MKPA 2LL4M 1GMNA 4IUAA 4UV6A 5CT2A 2J8LA 4Z09A 5COEA 1BHTA 5EODA 2QJ2A 2Q8AA 1W81A 3HMTA
chains in the Genus database with same CATH topology
3ZWZA 1GMOA 3HN4A 1W8KA 4R1AA 2KL5A 3HMRA 4R1CA 5CS5A 4APLA 4Z0DA 2Z8VA 1YXEA 4YIVA 3SP8A 1GP9A 5EOKA 3ZLEA 1I8NA 1NK1A 2HGFA 5I25A 4APMA 2QJ4A 5CT1A 4A5TS 2J8JA 2Q8BA 1HKYA 5CS9A 2LL3A 4DURA 3SRJA 2YIPA 3SRIA 1Z40A 5CT3A 2X2ZA 4Z0FA 4R19A 4R1BA 5CS3A 2F83A 4YIZA 4Z0EA 5CS1A 2YILA 2YIOA 2K13X 2Y8RA 2Z8WA 3HMSA 4UAOA 5CP9A 5CSQA 3MKPA 2LL4M 1GMNA 4IUAA 4UV6A 5CT2A 2J8LA 4Z09A 5COEA 1BHTA 5EODA 2QJ2A 2Q8AA 1W81A 3HMTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZWZ A;  1GMO A;  3HN4 A;  1W8K A;  4R1A A;  3HMR A;  4R1C A;  5CS5 A;  4APL A;  4DUR A;  4Z0D A;  2Z8V A;  1YXE A;  3SP8 A;  1GP9 A;  5EOK A;  3ZLE A;  1I8N A;  1NK1 A;  2HGF A;  5I25 A;  4APM A;  2QJ4 A;  5CT1 A;  4A5T S;  2J8J A;  2Q8B A;  1HKY A;  5CS9 A;  2LL3 A;  3SRJ A;  2YIP A;  3SRI A;  1Z40 A;  5CT3 A;  2X2Z A;  4Z0F A;  4R19 A;  4R1B A;  5CS3 A;  2F83 A;  4Z0E A;  5CS1 A;  2YIL A;  2YIO A;  2K13 X;  2Y8R A;  2Z8W A;  3HMS A;  4UAO A;  5CP9 A;  5CSQ A;  3MKP A;  2LL4 M;  1GMN A;  4IUA A;  4UV6 A;  5CT2 A;  2J8L A;  4Z09 A;  5COE A;  1BHT A;  5EOD A;  2QJ2 A;  2Q8A A;  1W81 A;  3HMT A; 
#chains in the Genus database with same CATH topology
 3ZWZ A;  1GMO A;  3HN4 A;  1W8K A;  4R1A A;  2KL5 A;  3HMR A;  4R1C A;  5CS5 A;  4APL A;  4Z0D A;  2Z8V A;  1YXE A;  4YIV A;  3SP8 A;  1GP9 A;  5EOK A;  3ZLE A;  1I8N A;  1NK1 A;  2HGF A;  5I25 A;  4APM A;  2QJ4 A;  5CT1 A;  4A5T S;  2J8J A;  2Q8B A;  1HKY A;  5CS9 A;  2LL3 A;  4DUR A;  3SRJ A;  2YIP A;  3SRI A;  1Z40 A;  5CT3 A;  2X2Z A;  4Z0F A;  4R19 A;  4R1B A;  5CS3 A;  2F83 A;  4YIZ A;  4Z0E A;  5CS1 A;  2YIL A;  2YIO A;  2K13 X;  2Y8R A;  2Z8W A;  3HMS A;  4UAO A;  5CP9 A;  5CSQ A;  3MKP A;  2LL4 M;  1GMN A;  4IUA A;  4UV6 A;  5CT2 A;  2J8L A;  4Z09 A;  5COE A;  1BHT A;  5EOD A;  2QJ2 A;  2Q8A A;  1W81 A;  3HMT A; 
#chains in the Genus database with same CATH homology
 3ZWZ A;  1GMO A;  3HN4 A;  1W8K A;  4R1A A;  2KL5 A;  3HMR A;  4R1C A;  5CS5 A;  4APL A;  4Z0D A;  2Z8V A;  1YXE A;  4YIV A;  3SP8 A;  1GP9 A;  5EOK A;  3ZLE A;  1I8N A;  1NK1 A;  2HGF A;  5I25 A;  4APM A;  2QJ4 A;  5CT1 A;  4A5T S;  2J8J A;  2Q8B A;  1HKY A;  5CS9 A;  2LL3 A;  4DUR A;  3SRJ A;  2YIP A;  3SRI A;  1Z40 A;  5CT3 A;  2X2Z A;  4Z0F A;  4R19 A;  4R1B A;  5CS3 A;  2F83 A;  4YIZ A;  4Z0E A;  5CS1 A;  2YIL A;  2YIO A;  2K13 X;  2Y8R A;  2Z8W A;  3HMS A;  4UAO A;  5CP9 A;  5CSQ A;  3MKP A;  2LL4 M;  1GMN A;  4IUA A;  4UV6 A;  5CT2 A;  2J8L A;  4Z09 A;  5COE A;  1BHT A;  5EOD A;  2QJ2 A;  2Q8A A;  1W81 A;  3HMT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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