1YXEA

Structure and inter-domain interactions of domain ii from the blood stage malarial protein, apical membrane antigen 1
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
140
structure length
140
Chain Sequence
MRGSHHHHHHGSNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and Inter-domain Interactions of Domain II from the Blood-stage Malarial Protein, Apical Membrane Antigen 1.
pubmed doi rcsb
molecule tags Immune system
source organism Plasmodium falciparum
molecule keywords apical membrane antigen 1
total genus 11
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2005-02-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1yxeA01
2K13X 4R1CA 4R19A 1GMOA 5CS9A 5CT3A 1GMNA 1I8NA 5EODA 2YILA 5CP9A 4DURA 3HMTA 4Z0FA 1Z40A 1GP9A 2Z8WA 1W81A 3SP8A 4Z0DA 5EOKA 5CSQA 2X2ZA 4R1AA 2J8JA 4IUAA 3ZWZA 4APMA 5COEA 1HKYA 2Y8RA 4Z0EA 3ZLEA 4A5TS 5CS5A 3HMSA 2LL3A 1BHTA 3SRJA 4UAOA 5I25A 2QJ4A 5CS3A 5CT2A 4R1BA 4UV6A 3SRIA 1W8KA 2Z8VA 3MKPA 2Q8BA 2QJ2A 3HMRA 2F83A 3HN4A 1NK1A 2LL4M 2YIOA 5CT1A 5CS1A 2HGFA 4Z09A 2Q8AA 2YIPA 4APLA 1YXEA 2J8LA
chains in the Genus database with same CATH superfamily
2K13X 4R1CA 4R19A 1GMOA 5CS9A 5CT3A 1GMNA 1I8NA 5EODA 2YILA 5CP9A 4DURA 3HMTA 4Z0FA 1Z40A 1GP9A 2Z8WA 1W81A 3SP8A 4Z0DA 5EOKA 5CSQA 2X2ZA 4R1AA 2J8JA 4IUAA 3ZWZA 4APMA 5COEA 1HKYA 2Y8RA 4Z0EA 3ZLEA 4A5TS 5CS5A 3HMSA 2LL3A 1BHTA 3SRJA 4UAOA 5I25A 2QJ4A 5CS3A 5CT2A 4R1BA 4UV6A 3SRIA 1W8KA 2Z8VA 3MKPA 2Q8BA 2QJ2A 3HMRA 2F83A 3HN4A 1NK1A 2KL5A 2LL4M 2YIOA 5CT1A 4YIVA 5CS1A 2HGFA 4YIZA 2Q8AA 4Z09A 2YIPA 4APLA 1YXEA 2J8LA
chains in the Genus database with same CATH topology
2K13X 4R1CA 4R19A 1GMOA 5CS9A 5CT3A 1GMNA 1I8NA 5EODA 2YILA 5CP9A 4DURA 3HMTA 4Z0FA 1Z40A 1GP9A 2Z8WA 1W81A 3SP8A 4Z0DA 5EOKA 5CSQA 2X2ZA 4R1AA 2J8JA 4IUAA 3ZWZA 4APMA 5COEA 1HKYA 2Y8RA 4Z0EA 3ZLEA 4A5TS 5CS5A 3HMSA 2LL3A 1BHTA 3SRJA 4UAOA 5I25A 2QJ4A 5CS3A 5CT2A 4R1BA 4UV6A 3SRIA 1W8KA 2Z8VA 3MKPA 2Q8BA 2QJ2A 3HMRA 2F83A 3HN4A 1NK1A 2KL5A 2LL4M 2YIOA 5CT1A 4YIVA 5CS1A 2HGFA 4YIZA 2Q8AA 4Z09A 2YIPA 4APLA 1YXEA 2J8LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K13 X;  4R1C A;  4R19 A;  1GMO A;  5CS9 A;  5CT3 A;  1GMN A;  1I8N A;  5EOD A;  2YIL A;  5CP9 A;  4DUR A;  3HMT A;  4Z0F A;  1Z40 A;  1GP9 A;  2Z8W A;  1W81 A;  3SP8 A;  4Z0D A;  5EOK A;  5CSQ A;  2X2Z A;  4R1A A;  2J8J A;  4IUA A;  3ZWZ A;  4APM A;  5COE A;  1HKY A;  2Y8R A;  4Z0E A;  3ZLE A;  4A5T S;  5CS5 A;  3HMS A;  2LL3 A;  1BHT A;  3SRJ A;  4UAO A;  5I25 A;  2QJ4 A;  5CS3 A;  5CT2 A;  4R1B A;  4UV6 A;  3SRI A;  1W8K A;  2Z8V A;  3MKP A;  2Q8B A;  2QJ2 A;  3HMR A;  2F83 A;  3HN4 A;  1NK1 A;  2LL4 M;  2YIO A;  5CT1 A;  5CS1 A;  2HGF A;  4Z09 A;  2Q8A A;  2YIP A;  4APL A;  1YXE A;  2J8L A; 
#chains in the Genus database with same CATH topology
 2K13 X;  4R1C A;  4R19 A;  1GMO A;  5CS9 A;  5CT3 A;  1GMN A;  1I8N A;  5EOD A;  2YIL A;  5CP9 A;  4DUR A;  3HMT A;  4Z0F A;  1Z40 A;  1GP9 A;  2Z8W A;  1W81 A;  3SP8 A;  4Z0D A;  5EOK A;  5CSQ A;  2X2Z A;  4R1A A;  2J8J A;  4IUA A;  3ZWZ A;  4APM A;  5COE A;  1HKY A;  2Y8R A;  4Z0E A;  3ZLE A;  4A5T S;  5CS5 A;  3HMS A;  2LL3 A;  1BHT A;  3SRJ A;  4UAO A;  5I25 A;  2QJ4 A;  5CS3 A;  5CT2 A;  4R1B A;  4UV6 A;  3SRI A;  1W8K A;  2Z8V A;  3MKP A;  2Q8B A;  2QJ2 A;  3HMR A;  2F83 A;  3HN4 A;  1NK1 A;  2KL5 A;  2LL4 M;  2YIO A;  5CT1 A;  4YIV A;  5CS1 A;  2HGF A;  4YIZ A;  2Q8A A;  4Z09 A;  2YIP A;  4APL A;  1YXE A;  2J8L A; 
#chains in the Genus database with same CATH homology
 2K13 X;  4R1C A;  4R19 A;  1GMO A;  5CS9 A;  5CT3 A;  1GMN A;  1I8N A;  5EOD A;  2YIL A;  5CP9 A;  4DUR A;  3HMT A;  4Z0F A;  1Z40 A;  1GP9 A;  2Z8W A;  1W81 A;  3SP8 A;  4Z0D A;  5EOK A;  5CSQ A;  2X2Z A;  4R1A A;  2J8J A;  4IUA A;  3ZWZ A;  4APM A;  5COE A;  1HKY A;  2Y8R A;  4Z0E A;  3ZLE A;  4A5T S;  5CS5 A;  3HMS A;  2LL3 A;  1BHT A;  3SRJ A;  4UAO A;  5I25 A;  2QJ4 A;  5CS3 A;  5CT2 A;  4R1B A;  4UV6 A;  3SRI A;  1W8K A;  2Z8V A;  3MKP A;  2Q8B A;  2QJ2 A;  3HMR A;  2F83 A;  3HN4 A;  1NK1 A;  2KL5 A;  2LL4 M;  2YIO A;  5CT1 A;  4YIV A;  5CS1 A;  2HGF A;  4YIZ A;  2Q8A A;  4Z09 A;  2YIP A;  4APL A;  1YXE A;  2J8L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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