1Z40 | Genus

Total Genus 93

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	93
sequence length	331
structure length	311
Chain Sequence	NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 311 atoms

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311 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Plasmodium falciparum
publication title	Structure of AMA1 from Plasmodium falciparum reveals a clustering of polymorphisms that surround a conserved hydrophobic pocket pubmed doi rcsb
molecule keywords	apical membrane antigen 1 precursor
total genus	93
structure length	311
sequence length	331
chains with identical sequence	E
ec nomenclature
pdb deposition date	2005-03-14

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.50.4.10	Alpha Beta	3-Layer(bba) Sandwich	Hepatocyte Growth Factor	Hepatocyte Growth Factor	1z40A01

5CS3A 4Z09A 3HMSA 2Z8VA 5CS1A 2YIPA 2YIOA 5CSQA 4R19A 3SRJA 2Y8RA 4Z0EA 5EODA 5CT2A 2X2ZA 2Z8WA 2F83A 4APLA 3ZLEA 5COEA 1W81A 4UV6A 3HMRA 3SRIA 4R1CA 2LL3A 2YILA 4IUAA 3ZWZA 4DURA 2K13X 4R1BA 4UAOA 5CT1A 1NK1A 2J8JA 1GP9A 1HKYA 2LL4M 2QJ4A 3HN4A 3HMTA 1I8NA 5CP9A 3SP8A 4A5TS 1YXEA 3MKPA 4Z0FA 5CT3A 2Q8BA 2J8LA 4Z0DA 2HGFA 1GMNA 1W8KA 5CS9A 1BHTA 4R1AA 1GMOA 5CS5A 2QJ2A 1Z40A 5I25A 4APMA 2Q8AA 5EOKA
chains in the Genus database with same CATH superfamily

5CS3A 4Z09A 3HMSA 2Z8VA 5CS1A 2YIPA 2YIOA 5CSQA 4R19A 3SRJA 2Y8RA 4Z0EA 5EODA 5CT2A 2X2ZA 4YIZA 2Z8WA 2F83A 4APLA 3ZLEA 5COEA 1W81A 4UV6A 3HMRA 3SRIA 4R1CA 2LL3A 2YILA 4IUAA 3ZWZA 4DURA 2K13X 4R1BA 4UAOA 5CT1A 1NK1A 2J8JA 1GP9A 1HKYA 2LL4M 2QJ4A 3HN4A 3HMTA 1I8NA 5CP9A 3SP8A 4A5TS 1YXEA 3MKPA 4Z0FA 5CT3A 2Q8BA 2J8LA 2KL5A 2HGFA 1GMNA 1W8KA 5CS9A 1BHTA 4YIVA 4Z0DA 4R1AA 1GMOA 5CS5A 2QJ2A 1Z40A 5I25A 4APMA 2Q8AA 5EOKA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5CS3 A;  4Z09 A;  3HMS A;  2Z8V A;  5CS1 A;  2YIP A;  2YIO A;  5CSQ A;  4R19 A;  3SRJ A;  2Y8R A;  4Z0E A;  5EOD A;  5CT2 A;  2X2Z A;  2Z8W A;  2F83 A;  4APL A;  3ZLE A;  5COE A;  1W81 A;  4UV6 A;  3HMR A;  3SRI A;  4R1C A;  2LL3 A;  2YIL A;  4IUA A;  3ZWZ A;  4DUR A;  2K13 X;  4R1B A;  4UAO A;  5CT1 A;  1NK1 A;  2J8J A;  1GP9 A;  1HKY A;  2LL4 M;  2QJ4 A;  3HN4 A;  3HMT A;  1I8N A;  5CP9 A;  3SP8 A;  4A5T S;  1YXE A;  3MKP A;  4Z0F A;  5CT3 A;  2Q8B A;  2J8L A;  4Z0D A;  2HGF A;  1GMN A;  1W8K A;  5CS9 A;  1BHT A;  4R1A A;  1GMO A;  5CS5 A;  2QJ2 A;  1Z40 A;  5I25 A;  4APM A;  2Q8A A;  5EOK A; 
#chains in the Genus database with same CATH topology
 5CS3 A;  4Z09 A;  3HMS A;  2Z8V A;  5CS1 A;  2YIP A;  2YIO A;  5CSQ A;  4R19 A;  3SRJ A;  2Y8R A;  4Z0E A;  5EOD A;  5CT2 A;  2X2Z A;  4YIZ A;  2Z8W A;  2F83 A;  4APL A;  3ZLE A;  5COE A;  1W81 A;  4UV6 A;  3HMR A;  3SRI A;  4R1C A;  2LL3 A;  2YIL A;  4IUA A;  3ZWZ A;  4DUR A;  2K13 X;  4R1B A;  4UAO A;  5CT1 A;  1NK1 A;  2J8J A;  1GP9 A;  1HKY A;  2LL4 M;  2QJ4 A;  3HN4 A;  3HMT A;  1I8N A;  5CP9 A;  3SP8 A;  4A5T S;  1YXE A;  3MKP A;  4Z0F A;  5CT3 A;  2Q8B A;  2J8L A;  2KL5 A;  2HGF A;  1GMN A;  1W8K A;  5CS9 A;  1BHT A;  4YIV A;  4Z0D A;  4R1A A;  1GMO A;  5CS5 A;  2QJ2 A;  1Z40 A;  5I25 A;  4APM A;  2Q8A A;  5EOK A; 
#chains in the Genus database with same CATH homology
 5CS3 A;  4Z09 A;  3HMS A;  2Z8V A;  5CS1 A;  2YIP A;  2YIO A;  5CSQ A;  4R19 A;  3SRJ A;  2Y8R A;  4Z0E A;  5EOD A;  5CT2 A;  2X2Z A;  4YIZ A;  2Z8W A;  2F83 A;  4APL A;  3ZLE A;  5COE A;  1W81 A;  4UV6 A;  3HMR A;  3SRI A;  4R1C A;  2LL3 A;  2YIL A;  4IUA A;  3ZWZ A;  4DUR A;  2K13 X;  4R1B A;  4UAO A;  5CT1 A;  1NK1 A;  2J8J A;  1GP9 A;  1HKY A;  2LL4 M;  2QJ4 A;  3HN4 A;  3HMT A;  1I8N A;  5CP9 A;  3SP8 A;  4A5T S;  1YXE A;  3MKP A;  4Z0F A;  5CT3 A;  2Q8B A;  2J8L A;  2KL5 A;  2HGF A;  1GMN A;  1W8K A;  5CS9 A;  1BHT A;  4YIV A;  4Z0D A;  4R1A A;  1GMO A;  5CS5 A;  2QJ2 A;  1Z40 A;  5I25 A;  4APM A;  2Q8A A;  5EOK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1Z40A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN