1Z40A

Ama1 from plasmodium falciparum
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
331
structure length
311
Chain Sequence
NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of AMA1 from Plasmodium falciparum reveals a clustering of polymorphisms that surround a conserved hydrophobic pocket
pubmed doi rcsb
molecule tags Unknown function
source organism Plasmodium falciparum
molecule keywords apical membrane antigen 1 precursor
total genus 93
structure length 311
sequence length 331
chains with identical sequence E
ec nomenclature
pdb deposition date 2005-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1z40A01
2J8LA 1W81A 1HKYA 4APMA 4R1BA 4UV6A 2HGFA 4A5TS 2Q8AA 2F83A 4Z0DA 3SP8A 5CT2A 1I8NA 2YIOA 2LL3A 4Z09A 4APLA 2J8JA 2QJ4A 5CS3A 3HN4A 3MKPA 2Z8VA 3SRIA 5CT1A 2X2ZA 1YXEA 1NK1A 3HMTA 1BHTA 4UAOA 4R19A 3ZLEA 4R1AA 5CP9A 5CS1A 5EODA 2YIPA 4Z0EA 3ZWZA 5EOKA 2Y8RA 2YILA 5I25A 4DURA 2QJ2A 1GP9A 4IUAA 1GMOA 1GMNA 5CT3A 3SRJA 4R1CA 3HMRA 2Q8BA 5CSQA 5CS5A 5CS9A 4Z0FA 2LL4M 2Z8WA 1Z40A 3HMSA 1W8KA 5COEA 2K13X
chains in the Genus database with same CATH superfamily
2J8LA 1W81A 1HKYA 4APMA 4R1BA 4UV6A 2HGFA 4A5TS 2Q8AA 2F83A 4Z0DA 3SP8A 5CT2A 1I8NA 2YIOA 2KL5A 2LL3A 4Z09A 4APLA 2J8JA 2QJ4A 5CS3A 3HN4A 3MKPA 2Z8VA 3SRIA 5CT1A 2X2ZA 1YXEA 1NK1A 4YIZA 3HMTA 1BHTA 4UAOA 4R19A 3ZLEA 4R1AA 5CP9A 5CS1A 5EODA 2YIPA 4Z0EA 3ZWZA 5EOKA 2Y8RA 2YILA 5I25A 4DURA 1GP9A 2QJ2A 4IUAA 1GMOA 1GMNA 5CT3A 3SRJA 4R1CA 3HMRA 2Q8BA 5CSQA 5CS5A 5CS9A 4Z0FA 2LL4M 4YIVA 2Z8WA 1Z40A 3HMSA 1W8KA 5COEA 2K13X
chains in the Genus database with same CATH topology
2J8LA 1W81A 1HKYA 4APMA 4R1BA 4UV6A 2HGFA 4A5TS 2Q8AA 2F83A 4Z0DA 3SP8A 5CT2A 1I8NA 2YIOA 2KL5A 2LL3A 4Z09A 4APLA 2J8JA 2QJ4A 5CS3A 3HN4A 3MKPA 2Z8VA 3SRIA 5CT1A 2X2ZA 1YXEA 1NK1A 4YIZA 3HMTA 1BHTA 4UAOA 4R19A 3ZLEA 4R1AA 5CP9A 5CS1A 5EODA 2YIPA 4Z0EA 3ZWZA 5EOKA 2Y8RA 2YILA 5I25A 4DURA 1GP9A 2QJ2A 4IUAA 1GMOA 1GMNA 5CT3A 3SRJA 4R1CA 3HMRA 2Q8BA 5CSQA 5CS5A 5CS9A 4Z0FA 2LL4M 4YIVA 2Z8WA 1Z40A 3HMSA 1W8KA 5COEA 2K13X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J8L A;  1W81 A;  1HKY A;  4APM A;  4R1B A;  4UV6 A;  2HGF A;  4A5T S;  2Q8A A;  2F83 A;  4Z0D A;  3SP8 A;  5CT2 A;  1I8N A;  2YIO A;  2LL3 A;  4Z09 A;  4APL A;  2J8J A;  2QJ4 A;  5CS3 A;  3HN4 A;  3MKP A;  2Z8V A;  3SRI A;  5CT1 A;  2X2Z A;  1YXE A;  1NK1 A;  3HMT A;  1BHT A;  4UAO A;  4R19 A;  3ZLE A;  4R1A A;  5CP9 A;  5CS1 A;  5EOD A;  2YIP A;  4Z0E A;  3ZWZ A;  5EOK A;  2Y8R A;  2YIL A;  5I25 A;  4DUR A;  2QJ2 A;  1GP9 A;  4IUA A;  1GMO A;  1GMN A;  5CT3 A;  3SRJ A;  4R1C A;  3HMR A;  2Q8B A;  5CSQ A;  5CS5 A;  5CS9 A;  4Z0F A;  2LL4 M;  2Z8W A;  1Z40 A;  3HMS A;  1W8K A;  5COE A;  2K13 X; 
#chains in the Genus database with same CATH topology
 2J8L A;  1W81 A;  1HKY A;  4APM A;  4R1B A;  4UV6 A;  2HGF A;  4A5T S;  2Q8A A;  2F83 A;  4Z0D A;  3SP8 A;  5CT2 A;  1I8N A;  2YIO A;  2KL5 A;  2LL3 A;  4Z09 A;  4APL A;  2J8J A;  2QJ4 A;  5CS3 A;  3HN4 A;  3MKP A;  2Z8V A;  3SRI A;  5CT1 A;  2X2Z A;  1YXE A;  1NK1 A;  4YIZ A;  3HMT A;  1BHT A;  4UAO A;  4R19 A;  3ZLE A;  4R1A A;  5CP9 A;  5CS1 A;  5EOD A;  2YIP A;  4Z0E A;  3ZWZ A;  5EOK A;  2Y8R A;  2YIL A;  5I25 A;  4DUR A;  1GP9 A;  2QJ2 A;  4IUA A;  1GMO A;  1GMN A;  5CT3 A;  3SRJ A;  4R1C A;  3HMR A;  2Q8B A;  5CSQ A;  5CS5 A;  5CS9 A;  4Z0F A;  2LL4 M;  4YIV A;  2Z8W A;  1Z40 A;  3HMS A;  1W8K A;  5COE A;  2K13 X; 
#chains in the Genus database with same CATH homology
 2J8L A;  1W81 A;  1HKY A;  4APM A;  4R1B A;  4UV6 A;  2HGF A;  4A5T S;  2Q8A A;  2F83 A;  4Z0D A;  3SP8 A;  5CT2 A;  1I8N A;  2YIO A;  2KL5 A;  2LL3 A;  4Z09 A;  4APL A;  2J8J A;  2QJ4 A;  5CS3 A;  3HN4 A;  3MKP A;  2Z8V A;  3SRI A;  5CT1 A;  2X2Z A;  1YXE A;  1NK1 A;  4YIZ A;  3HMT A;  1BHT A;  4UAO A;  4R19 A;  3ZLE A;  4R1A A;  5CP9 A;  5CS1 A;  5EOD A;  2YIP A;  4Z0E A;  3ZWZ A;  5EOK A;  2Y8R A;  2YIL A;  5I25 A;  4DUR A;  1GP9 A;  2QJ2 A;  4IUA A;  1GMO A;  1GMN A;  5CT3 A;  3SRJ A;  4R1C A;  3HMR A;  2Q8B A;  5CSQ A;  5CS5 A;  5CS9 A;  4Z0F A;  2LL4 M;  4YIV A;  2Z8W A;  1Z40 A;  3HMS A;  1W8K A;  5COE A;  2K13 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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