1Z40A

Ama1 from plasmodium falciparum
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
331
structure length
311
Chain Sequence
NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of AMA1 from Plasmodium falciparum reveals a clustering of polymorphisms that surround a conserved hydrophobic pocket
pubmed doi rcsb
molecule tags Unknown function
source organism Plasmodium falciparum
molecule keywords apical membrane antigen 1 precursor
total genus 93
structure length 311
sequence length 331
chains with identical sequence E
ec nomenclature
pdb deposition date 2005-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1z40A01
2YIOA 2J8JA 1GMOA 1W81A 1BHTA 1YXEA 4R1BA 3HMRA 2F83A 2QJ4A 4Z09A 3SRJA 4APLA 2Z8WA 2K13X 5CP9A 4A5TS 5I25A 4APMA 2LL4M 1GP9A 5CSQA 3HN4A 5CT1A 5CT2A 1NK1A 2HGFA 3SRIA 5EODA 2J8LA 2Q8BA 3ZWZA 5CS5A 2X2ZA 4Z0EA 2Z8VA 2LL3A 1W8KA 4UAOA 4UV6A 5EOKA 3SP8A 4DURA 2QJ2A 2YILA 4R1CA 5COEA 3HMTA 5CS3A 1I8NA 3HMSA 2Y8RA 1Z40A 4R19A 1GMNA 4R1AA 4IUAA 3ZLEA 5CS1A 3MKPA 5CS9A 4Z0FA 1HKYA 4Z0DA 5CT3A 2Q8AA 2YIPA
chains in the Genus database with same CATH superfamily
2YIOA 2J8JA 1GMOA 1W81A 1BHTA 1YXEA 4R1BA 3HMRA 2F83A 2QJ4A 4Z09A 3SRJA 4APLA 2Z8WA 2K13X 5CP9A 4A5TS 5I25A 4APMA 2LL4M 1GP9A 2KL5A 3HN4A 5CSQA 5CT2A 5CT1A 1NK1A 4YIZA 2HGFA 3SRIA 5EODA 2J8LA 2Q8BA 3ZWZA 5CS5A 2X2ZA 4Z0EA 2Z8VA 2LL3A 1W8KA 4UAOA 4UV6A 5EOKA 3SP8A 4DURA 2QJ2A 2YILA 4R1CA 5COEA 3HMTA 5CS3A 1I8NA 3HMSA 2Y8RA 1Z40A 4R19A 1GMNA 4R1AA 4IUAA 4YIVA 5CS1A 3MKPA 5CS9A 3ZLEA 4Z0FA 4Z0DA 1HKYA 5CT3A 2Q8AA 2YIPA
chains in the Genus database with same CATH topology
2YIOA 2J8JA 1GMOA 1W81A 1BHTA 1YXEA 4R1BA 3HMRA 2F83A 2QJ4A 4Z09A 3SRJA 4APLA 2Z8WA 2K13X 5CP9A 4A5TS 5I25A 4APMA 2LL4M 1GP9A 2KL5A 3HN4A 5CSQA 5CT2A 5CT1A 1NK1A 4YIZA 2HGFA 3SRIA 5EODA 2J8LA 2Q8BA 3ZWZA 5CS5A 2X2ZA 4Z0EA 2Z8VA 2LL3A 1W8KA 4UAOA 4UV6A 5EOKA 3SP8A 4DURA 2QJ2A 2YILA 4R1CA 5COEA 3HMTA 5CS3A 1I8NA 3HMSA 2Y8RA 1Z40A 4R19A 1GMNA 4R1AA 4IUAA 4YIVA 5CS1A 3MKPA 5CS9A 3ZLEA 4Z0FA 4Z0DA 1HKYA 5CT3A 2Q8AA 2YIPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YIO A;  2J8J A;  1GMO A;  1W81 A;  1BHT A;  1YXE A;  4R1B A;  3HMR A;  2F83 A;  2QJ4 A;  4Z09 A;  3SRJ A;  4APL A;  2Z8W A;  2K13 X;  5CP9 A;  4A5T S;  5I25 A;  4APM A;  2LL4 M;  1GP9 A;  5CSQ A;  3HN4 A;  5CT1 A;  5CT2 A;  1NK1 A;  2HGF A;  3SRI A;  5EOD A;  2J8L A;  2Q8B A;  3ZWZ A;  5CS5 A;  2X2Z A;  4Z0E A;  2Z8V A;  2LL3 A;  1W8K A;  4UAO A;  4UV6 A;  5EOK A;  3SP8 A;  4DUR A;  2QJ2 A;  2YIL A;  4R1C A;  5COE A;  3HMT A;  5CS3 A;  1I8N A;  3HMS A;  2Y8R A;  1Z40 A;  4R19 A;  1GMN A;  4R1A A;  4IUA A;  3ZLE A;  5CS1 A;  3MKP A;  5CS9 A;  4Z0F A;  1HKY A;  4Z0D A;  5CT3 A;  2Q8A A;  2YIP A; 
#chains in the Genus database with same CATH topology
 2YIO A;  2J8J A;  1GMO A;  1W81 A;  1BHT A;  1YXE A;  4R1B A;  3HMR A;  2F83 A;  2QJ4 A;  4Z09 A;  3SRJ A;  4APL A;  2Z8W A;  2K13 X;  5CP9 A;  4A5T S;  5I25 A;  4APM A;  2LL4 M;  1GP9 A;  2KL5 A;  3HN4 A;  5CSQ A;  5CT2 A;  5CT1 A;  1NK1 A;  4YIZ A;  2HGF A;  3SRI A;  5EOD A;  2J8L A;  2Q8B A;  3ZWZ A;  5CS5 A;  2X2Z A;  4Z0E A;  2Z8V A;  2LL3 A;  1W8K A;  4UAO A;  4UV6 A;  5EOK A;  3SP8 A;  4DUR A;  2QJ2 A;  2YIL A;  4R1C A;  5COE A;  3HMT A;  5CS3 A;  1I8N A;  3HMS A;  2Y8R A;  1Z40 A;  4R19 A;  1GMN A;  4R1A A;  4IUA A;  4YIV A;  5CS1 A;  3MKP A;  5CS9 A;  3ZLE A;  4Z0F A;  4Z0D A;  1HKY A;  5CT3 A;  2Q8A A;  2YIP A; 
#chains in the Genus database with same CATH homology
 2YIO A;  2J8J A;  1GMO A;  1W81 A;  1BHT A;  1YXE A;  4R1B A;  3HMR A;  2F83 A;  2QJ4 A;  4Z09 A;  3SRJ A;  4APL A;  2Z8W A;  2K13 X;  5CP9 A;  4A5T S;  5I25 A;  4APM A;  2LL4 M;  1GP9 A;  2KL5 A;  3HN4 A;  5CSQ A;  5CT2 A;  5CT1 A;  1NK1 A;  4YIZ A;  2HGF A;  3SRI A;  5EOD A;  2J8L A;  2Q8B A;  3ZWZ A;  5CS5 A;  2X2Z A;  4Z0E A;  2Z8V A;  2LL3 A;  1W8K A;  4UAO A;  4UV6 A;  5EOK A;  3SP8 A;  4DUR A;  2QJ2 A;  2YIL A;  4R1C A;  5COE A;  3HMT A;  5CS3 A;  1I8N A;  3HMS A;  2Y8R A;  1Z40 A;  4R19 A;  1GMN A;  4R1A A;  4IUA A;  4YIV A;  5CS1 A;  3MKP A;  5CS9 A;  3ZLE A;  4Z0F A;  4Z0D A;  1HKY A;  5CT3 A;  2Q8A A;  2YIP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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