1HKY | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	86
structure length	86
Chain Sequence	DYKDDDDKVKLTCYQNGVSFTGGKAISEAKAASSQACQELCEKDAKCRFFTLASGKCSLFADDAALRPTKSDGAVSGNKRCILLED

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d29acd6e0498bc1a29f3b03/pdb.gz): 1121 ms

reading 86 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

86 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

Adding embedded #jmolscript: select ({0:85});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Adhesin
source organism	Eimeria tenella
publication title	Solution Structure of a Pan Module from the Apicomplexan Parasite Eimeria Tenella pubmed doi rcsb
molecule keywords	MICRONEME PROTEIN 5 PRECURSOR
total genus	7
structure length	86
sequence length	86
ec nomenclature
pdb deposition date	2002-10-03

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.50.4.10	Alpha Beta	3-Layer(bba) Sandwich	Hepatocyte Growth Factor	Hepatocyte Growth Factor	1hkyA00

4UAOA 2F83A 2Y8RA 4Z09A 2YILA 5CS9A 5CSQA 2LL4M 2Q8BA 3HN4A 2QJ2A 4UV6A 3SRJA 1NK1A 4IUAA 3MKPA 1W81A 5I25A 4R1CA 4Z0DA 1Z40A 4APMA 4R19A 4Z0EA 2Z8VA 3ZWZA 4R1BA 5EODA 5EOKA 3SP8A 1BHTA 2J8JA 2HGFA 2LL3A 3HMSA 1HKYA 3HMTA 1GP9A 4A5TS 3ZLEA 5CS1A 5COEA 2J8LA 5CP9A 1GMNA 2Q8AA 2YIPA 4Z0FA 1GMOA 2K13X 2Z8WA 2YIOA 4R1AA 2QJ4A 4DURA 5CS3A 3SRIA 5CS5A 3HMRA 1I8NA 5CT2A 2X2ZA 1YXEA 4APLA 5CT3A 5CT1A 1W8KA
chains in the Genus database with same CATH superfamily

4UAOA 2F83A 2Y8RA 4Z09A 2YILA 5CS9A 5CSQA 2LL4M 2Q8BA 3HN4A 2QJ2A 4UV6A 3SRJA 1NK1A 4IUAA 3MKPA 1W81A 5I25A 4R1CA 4Z0DA 1Z40A 4APMA 4YIZA 4R19A 4Z0EA 2Z8VA 3ZWZA 4R1BA 5EODA 5EOKA 3SP8A 1BHTA 2J8JA 2HGFA 2KL5A 2LL3A 3HMSA 1HKYA 3HMTA 1GP9A 4YIVA 4A5TS 3ZLEA 5CS1A 5COEA 2J8LA 5CP9A 1GMNA 2Q8AA 2YIPA 4Z0FA 1GMOA 2K13X 2Z8WA 2YIOA 4R1AA 2QJ4A 4DURA 5CS3A 3SRIA 5CS5A 3HMRA 1I8NA 5CT2A 2X2ZA 1YXEA 4APLA 5CT3A 5CT1A 1W8KA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4UAO A;  2F83 A;  2Y8R A;  4Z09 A;  2YIL A;  5CS9 A;  5CSQ A;  2LL4 M;  2Q8B A;  3HN4 A;  2QJ2 A;  4UV6 A;  3SRJ A;  1NK1 A;  4IUA A;  3MKP A;  1W81 A;  5I25 A;  4R1C A;  4Z0D A;  1Z40 A;  4APM A;  4R19 A;  4Z0E A;  2Z8V A;  3ZWZ A;  4R1B A;  5EOD A;  5EOK A;  3SP8 A;  1BHT A;  2J8J A;  2HGF A;  2LL3 A;  3HMS A;  1HKY A;  3HMT A;  1GP9 A;  4A5T S;  3ZLE A;  5CS1 A;  5COE A;  2J8L A;  5CP9 A;  1GMN A;  2Q8A A;  2YIP A;  4Z0F A;  1GMO A;  2K13 X;  2Z8W A;  2YIO A;  4R1A A;  2QJ4 A;  4DUR A;  5CS3 A;  3SRI A;  5CS5 A;  3HMR A;  1I8N A;  5CT2 A;  2X2Z A;  1YXE A;  4APL A;  5CT3 A;  5CT1 A;  1W8K A; 
#chains in the Genus database with same CATH topology
 4UAO A;  2F83 A;  2Y8R A;  4Z09 A;  2YIL A;  5CS9 A;  5CSQ A;  2LL4 M;  2Q8B A;  3HN4 A;  2QJ2 A;  4UV6 A;  3SRJ A;  1NK1 A;  4IUA A;  3MKP A;  1W81 A;  5I25 A;  4R1C A;  4Z0D A;  1Z40 A;  4APM A;  4YIZ A;  4R19 A;  4Z0E A;  2Z8V A;  3ZWZ A;  4R1B A;  5EOD A;  5EOK A;  3SP8 A;  1BHT A;  2J8J A;  2HGF A;  2KL5 A;  2LL3 A;  3HMS A;  1HKY A;  3HMT A;  1GP9 A;  4YIV A;  4A5T S;  3ZLE A;  5CS1 A;  5COE A;  2J8L A;  5CP9 A;  1GMN A;  2Q8A A;  2YIP A;  4Z0F A;  1GMO A;  2K13 X;  2Z8W A;  2YIO A;  4R1A A;  2QJ4 A;  4DUR A;  5CS3 A;  3SRI A;  5CS5 A;  3HMR A;  1I8N A;  5CT2 A;  2X2Z A;  1YXE A;  4APL A;  5CT3 A;  5CT1 A;  1W8K A; 
#chains in the Genus database with same CATH homology
 4UAO A;  2F83 A;  2Y8R A;  4Z09 A;  2YIL A;  5CS9 A;  5CSQ A;  2LL4 M;  2Q8B A;  3HN4 A;  2QJ2 A;  4UV6 A;  3SRJ A;  1NK1 A;  4IUA A;  3MKP A;  1W81 A;  5I25 A;  4R1C A;  4Z0D A;  1Z40 A;  4APM A;  4YIZ A;  4R19 A;  4Z0E A;  2Z8V A;  3ZWZ A;  4R1B A;  5EOD A;  5EOK A;  3SP8 A;  1BHT A;  2J8J A;  2HGF A;  2KL5 A;  2LL3 A;  3HMS A;  1HKY A;  3HMT A;  1GP9 A;  4YIV A;  4A5T S;  3ZLE A;  5CS1 A;  5COE A;  2J8L A;  5CP9 A;  1GMN A;  2Q8A A;  2YIP A;  4Z0F A;  1GMO A;  2K13 X;  2Z8W A;  2YIO A;  4R1A A;  2QJ4 A;  4DUR A;  5CS3 A;  3SRI A;  5CS5 A;  3HMR A;  1I8N A;  5CT2 A;  2X2Z A;  1YXE A;  4APL A;  5CT3 A;  5CT1 A;  1W8K A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1HKYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN