The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
5
|
sequence length |
140
|
structure length |
140
|
Chain Sequence |
VFRADFLSELDAPAQAGTESAVSGVEGLPPGLALLVVKRGPNAGSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVNREPVDSAVLANGDEVQIGKFRLVFLTGHKQGEDLEHHHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution NMR structure of FHA domain of Mb1858 from Mycobacterium bovis. Northeast Structural Genomics Consortium Target MbR243C (24-155).
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Mycobacterium bovis
|
| molecule keywords |
Uncharacterized protein Mb1858
|
| total genus |
5
|
| structure length |
140
|
| sequence length |
140
|
| ec nomenclature | |
| pdb deposition date | 2009-06-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00498 | FHA | FHA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 2CSW A; 3VPY A; 3I0N A; 3HX1 A; 1J4P A; 3HUE A; 4EJQ A; 2BRF A; 3VA1 A; 2XT9 B; 2W3O A; 3PO8 A; 1FHQ A; 1LGP A; 1LGQ A; 3I6W A; 1YJM A; 1K3J A; 2AFF A; 3ELS A; 3UV0 A; 3UMZ A; 3KT9 A; 4G2S A; 2EH0 A; 5A8I A; 1G6G A; 1GXC A; 3GQS A; 3UOT A; 1K3N A; 1G3G A; 2JKD A; 2FEZ A; 1K2M A; 1J4Q A; 3MDB A; 1J4K A; 3HUF A; 1J4L A; 1UHT A; 4H87 A; 2KFU A; 3I0M A; 2FF4 A; 1K3Q A; 3VA4 A; 2G1L A; 4EGX A; 3I6U A; 1UJX A; 2PIE A; 3UNN A; 3OUN A; 1J4O A; 3ELV A; 1R21 A; 1DMZ A; 2JQL A; 2JQJ A; 4JON A; 3UNM A; 1WLN A; 2LC1 A; 4D9V A; 1FHR A; 3FM8 A; 2JPE A; 3UN0 A; 1QU5 A; 1YJ5 C; 2JQI A; 1MZK A; 5E50 A; 4QCJ A; 2KB4 A; 1WV3 A; 2KKL A; 1K2N A; 2KB3 A; 3POA A; 4A0E A; 5DJO A; 2A0T A; #chains in the Genus database with same CATH topology 3PFN A; 2CSW A; 3VPY A; 3I0N A; 3HX1 A; 1J4P A; 1Y3H A; 3HUE A; 1U7F B; 4EJQ A; 2BRF A; 3VZC A; 3VZD A; 1Z0S A; 4V24 A; 3VA1 A; 4WRR A; 2XT9 B; 1MR1 A; 2W3O A; 3DIT A; 3PO8 A; 1YT5 A; 1Z0Z A; 1FHQ A; 5JER A; 2I29 A; 4HAO A; 1SUW A; 2I1W A; 3V80 A; 1LGP A; 1LGQ A; 3A77 A; 3I6W A; 2Q5F A; 1YJM A; 1K3J A; 2XXS A; 2AFF A; 3ELS A; 3UV0 A; 3UMZ A; 5DHU A; 1U0R A; 3KT9 A; 2EH0 A; 4G2S A; 5DHT A; 3VZB A; 5EJF A; 1DEV A; 5A8I A; 3V8P A; 1G6G A; 4WER A; 1GXC A; 3GQS A; 3UOT A; 5EJH A; 3V7W A; 1K3N A; 1DD1 A; 5JEO A; 1G3G A; 2BON A; 1U0T A; 2JGR A; 2JKD A; 2I2D A; 1Z0U A; 5DHS A; 4L02 A; 2FEZ A; 1K2M A; 1KHU A; 1U7F A; 4A4Y A; 1J4Q A; 3V8N A; 3MDB A; 2I2B A; 1J4K A; 2P1R A; 2I2C A; 3HUF A; 3V8R A; 4DY6 A; 2QV7 A; 1J4L A; 1UHT A; 4H87 A; 3AFO A; 2KFU A; 3T5P A; 3I0M A; 2FF4 A; 5DHR A; 5DHP A; 1U7V B; 3V7U A; 1K3Q A; 3V7Y A; 3DSH A; 5BVI A; 3VA4 A; 1KHX A; 5EJI A; 5C4V A; 3GMJ A; 2G1L A; 4EGX A; 3V8M A; 2AN1 A; 3I6U A; 5JEK A; 4JIV D; 1UJX A; 2I2F A; 2PIE A; 3UNN A; 3OUN A; 5JEL A; 1J4O A; 1R21 A; 3ELV A; 1DMZ A; 1Y3I A; 2JQL A; 2JQJ A; 5JEM A; 4R9P A; 4JON A; 1G88 A; 1MK2 A; 3UNM A; 1WLN A; 4JIW D; 1QWT A; 2LC1 A; 4D9V A; 4KU0 D; 1FHR A; 3FM8 A; 2JPE A; 3S40 A; 2QVL A; 3UN0 A; 1QU5 A; 5JEJ A; 1YJ5 C; 2JQI A; 1MZK A; 5E50 A; 4QCJ A; 2KB4 A; 1WV3 A; 1ZOQ A; 2KKL A; 1K2N A; 3V8Q A; 5DHQ A; 1MJS A; 1J2F A; 1YGS A; 1U7V A; 2KB3 A; 3POA A; 2I2A A; 4A0E A; 5DJO A; 2A0T A; 5EJG A; #chains in the Genus database with same CATH homology 2CSW A; 3VPY A; 3I0N A; 3HX1 A; 1J4P A; 3HUE A; 1U7F B; 4EJQ A; 2BRF A; 3VZC A; 3VZD A; 4V24 A; 3VA1 A; 4WRR A; 2XT9 B; 1MR1 A; 2W3O A; 3DIT A; 3PO8 A; 1FHQ A; 5JER A; 1LGP A; 1LGQ A; 3A77 A; 3I6W A; 1YJM A; 1K3J A; 2XXS A; 2AFF A; 3ELS A; 3UV0 A; 3UMZ A; 3KT9 A; 4G2S A; 2EH0 A; 3VZB A; 1DEV A; 5A8I A; 1G6G A; 4WER A; 1GXC A; 3GQS A; 3UOT A; 1K3N A; 1DD1 A; 5JEO A; 1G3G A; 2BON A; 2JGR A; 2JKD A; 4L02 A; 2FEZ A; 1K2M A; 1KHU A; 1U7F A; 4A4Y A; 1J4Q A; 3MDB A; 1J4K A; 3HUF A; 2P1R A; 2QV7 A; 1J4L A; 1UHT A; 4H87 A; 2KFU A; 3T5P A; 3I0M A; 2FF4 A; 1U7V B; 1K3Q A; 3DSH A; 5BVI A; 3VA4 A; 1KHX A; 5C4V A; 3GMJ A; 2G1L A; 4EGX A; 3I6U A; 5JEK A; 4JIV D; 1UJX A; 2PIE A; 3UNN A; 3OUN A; 5JEL A; 1J4O A; 3ELV A; 1R21 A; 1DMZ A; 2JQL A; 2JQJ A; 5JEM A; 4R9P A; 4JON A; 1G88 A; 1MK2 A; 3UNM A; 1WLN A; 4JIW D; 1QWT A; 2LC1 A; 4D9V A; 4KU0 D; 1FHR A; 3FM8 A; 2JPE A; 3S40 A; 2QVL A; 3UN0 A; 1QU5 A; 5JEJ A; 1YJ5 C; 2JQI A; 1MZK A; 5E50 A; 4QCJ A; 2KB4 A; 1WV3 A; 1ZOQ A; 2KKL A; 1K2N A; 1MJS A; 1J2F A; 1YGS A; 1U7V A; 2KB3 A; 3POA A; 4A0E A; 5DJO A; 2A0T A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
