2LL3A

The solution structure of tgmic4 apple-5 domain
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
70
structure length
70
Chain Sequence
CVHTGNIGSKAQTIGEVKRASSLSECRARCQAEKECSHYTYNVKSGLCYPKRGKPQFYKYLGDMTGSRTC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS5 (66-68)O1 (10-79)TIV1 (51-54)S1 (16-18)S3 (45-51)S2 (27-28)TVIII1 (29-32)AH1 (32-41)TII1 (69-72)S4 (56-61)TI1 (42-45)Updating...
connected with : NaN
molecule tags Cell adhesion
source organism Toxoplasma gondii
publication title Galactose Recognition by the Apicomplexan Parasite Toxoplasma gondii.
pubmed doi rcsb
molecule keywords Micronemal protein 4
total genus 16
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2011-10-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2ll3A00
2J8LA 2Z8VA 5CS1A 2YIOA 4UV6A 2YILA 4APLA 2QJ4A 2Z8WA 5COEA 5CSQA 3HMRA 3HN4A 5CT3A 2LL3A 1YXEA 1NK1A 3SRIA 3ZWZA 2Y8RA 3MKPA 2QJ2A 5CS3A 3SP8A 2Q8AA 4Z0DA 2Q8BA 3ZLEA 5CT1A 4UAOA 2J8JA 5CP9A 4Z0EA 1GMNA 1Z40A 1I8NA 4R19A 4Z09A 2K13X 2YIPA 1W8KA 4IUAA 4R1AA 3HMTA 2X2ZA 4DURA 5CS9A 4R1CA 1W81A 5I25A 3HMSA 4A5TS 5CS5A 2LL4M 1BHTA 4APMA 1GP9A 5CT2A 1HKYA 2HGFA 5EODA 2F83A 4Z0FA 3SRJA 5EOKA 4R1BA 1GMOA
chains in the Genus database with same CATH superfamily
2J8LA 2Z8VA 5CS1A 2YIOA 4UV6A 2YILA 4YIVA 4APLA 2QJ4A 2Z8WA 5COEA 5CSQA 3HMRA 3HN4A 5CT3A 2LL3A 1YXEA 1NK1A 4YIZA 3SRIA 3ZWZA 2Y8RA 3MKPA 2QJ2A 5CS3A 3SP8A 2Q8AA 4Z0DA 2Q8BA 3ZLEA 5CT1A 4UAOA 2J8JA 5CP9A 4Z0EA 1GMNA 1Z40A 1I8NA 4R19A 4Z09A 2K13X 2YIPA 1W8KA 4IUAA 4R1AA 3HMTA 2X2ZA 4DURA 5CS9A 2KL5A 4R1CA 1W81A 5I25A 3HMSA 4A5TS 5CS5A 2LL4M 1BHTA 4APMA 1GP9A 5CT2A 1HKYA 2HGFA 5EODA 2F83A 4Z0FA 3SRJA 5EOKA 4R1BA 1GMOA
chains in the Genus database with same CATH topology
2J8LA 2Z8VA 5CS1A 2YIOA 4UV6A 2YILA 4YIVA 4APLA 2QJ4A 2Z8WA 5COEA 5CSQA 3HMRA 3HN4A 5CT3A 2LL3A 1YXEA 1NK1A 4YIZA 3SRIA 3ZWZA 2Y8RA 3MKPA 2QJ2A 5CS3A 3SP8A 2Q8AA 4Z0DA 2Q8BA 3ZLEA 5CT1A 4UAOA 2J8JA 5CP9A 4Z0EA 1GMNA 1Z40A 1I8NA 4R19A 4Z09A 2K13X 2YIPA 1W8KA 4IUAA 4R1AA 3HMTA 2X2ZA 4DURA 5CS9A 2KL5A 4R1CA 1W81A 5I25A 3HMSA 4A5TS 5CS5A 2LL4M 1BHTA 4APMA 1GP9A 5CT2A 1HKYA 2HGFA 5EODA 2F83A 4Z0FA 3SRJA 5EOKA 4R1BA 1GMOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J8L A;  2Z8V A;  5CS1 A;  2YIO A;  4UV6 A;  2YIL A;  4APL A;  2QJ4 A;  2Z8W A;  5COE A;  5CSQ A;  3HMR A;  3HN4 A;  5CT3 A;  2LL3 A;  1YXE A;  1NK1 A;  3SRI A;  3ZWZ A;  2Y8R A;  3MKP A;  2QJ2 A;  5CS3 A;  3SP8 A;  2Q8A A;  4Z0D A;  2Q8B A;  3ZLE A;  5CT1 A;  4UAO A;  2J8J A;  5CP9 A;  4Z0E A;  1GMN A;  1Z40 A;  1I8N A;  4R19 A;  4Z09 A;  2K13 X;  2YIP A;  1W8K A;  4IUA A;  4R1A A;  3HMT A;  2X2Z A;  4DUR A;  5CS9 A;  4R1C A;  1W81 A;  5I25 A;  3HMS A;  4A5T S;  5CS5 A;  2LL4 M;  1BHT A;  4APM A;  1GP9 A;  5CT2 A;  1HKY A;  2HGF A;  5EOD A;  2F83 A;  4Z0F A;  3SRJ A;  5EOK A;  4R1B A;  1GMO A; 
#chains in the Genus database with same CATH topology
 2J8L A;  2Z8V A;  5CS1 A;  2YIO A;  4UV6 A;  2YIL A;  4YIV A;  4APL A;  2QJ4 A;  2Z8W A;  5COE A;  5CSQ A;  3HMR A;  3HN4 A;  5CT3 A;  2LL3 A;  1YXE A;  1NK1 A;  4YIZ A;  3SRI A;  3ZWZ A;  2Y8R A;  3MKP A;  2QJ2 A;  5CS3 A;  3SP8 A;  2Q8A A;  4Z0D A;  2Q8B A;  3ZLE A;  5CT1 A;  4UAO A;  2J8J A;  5CP9 A;  4Z0E A;  1GMN A;  1Z40 A;  1I8N A;  4R19 A;  4Z09 A;  2K13 X;  2YIP A;  1W8K A;  4IUA A;  4R1A A;  3HMT A;  2X2Z A;  4DUR A;  5CS9 A;  2KL5 A;  4R1C A;  1W81 A;  5I25 A;  3HMS A;  4A5T S;  5CS5 A;  2LL4 M;  1BHT A;  4APM A;  1GP9 A;  5CT2 A;  1HKY A;  2HGF A;  5EOD A;  2F83 A;  4Z0F A;  3SRJ A;  5EOK A;  4R1B A;  1GMO A; 
#chains in the Genus database with same CATH homology
 2J8L A;  2Z8V A;  5CS1 A;  2YIO A;  4UV6 A;  2YIL A;  4YIV A;  4APL A;  2QJ4 A;  2Z8W A;  5COE A;  5CSQ A;  3HMR A;  3HN4 A;  5CT3 A;  2LL3 A;  1YXE A;  1NK1 A;  4YIZ A;  3SRI A;  3ZWZ A;  2Y8R A;  3MKP A;  2QJ2 A;  5CS3 A;  3SP8 A;  2Q8A A;  4Z0D A;  2Q8B A;  3ZLE A;  5CT1 A;  4UAO A;  2J8J A;  5CP9 A;  4Z0E A;  1GMN A;  1Z40 A;  1I8N A;  4R19 A;  4Z09 A;  2K13 X;  2YIP A;  1W8K A;  4IUA A;  4R1A A;  3HMT A;  2X2Z A;  4DUR A;  5CS9 A;  2KL5 A;  4R1C A;  1W81 A;  5I25 A;  3HMS A;  4A5T S;  5CS5 A;  2LL4 M;  1BHT A;  4APM A;  1GP9 A;  5CT2 A;  1HKY A;  2HGF A;  5EOD A;  2F83 A;  4Z0F A;  3SRJ A;  5EOK A;  4R1B A;  1GMO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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