2LL4M

Haddock structure of tgmic4-a5/lacto-n-biose complex, based on noe-derived distance restraints
Total Genus 20
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
70
structure length
70
Chain Sequence
CVHTGNIGSKAQTIGEVKRASSLSECRARCQAEKECSHYTYNVKSGLCYPKRGKPQFYKYLGDMTGSRTC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Galactose Recognition by the Apicomplexan Parasite Toxoplasma gondii.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Toxoplasma gondii
molecule keywords Micronemal protein 4
total genus 20
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2011-10-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2ll4M00
2YILA 2Q8BA 1W8KA 5CS5A 4R1BA 5CT2A 4Z09A 1GMOA 1YXEA 3SRJA 3HMRA 5CS9A 4APLA 5EOKA 2J8JA 2Y8RA 4A5TS 3SP8A 2YIPA 5CS1A 5CT3A 1BHTA 3MKPA 1HKYA 4R1AA 3HMTA 4R19A 4DURA 2X2ZA 5CS3A 4R1CA 4IUAA 5CP9A 5CT1A 2HGFA 4APMA 2YIOA 1NK1A 3HN4A 4Z0DA 2QJ4A 4Z0EA 3SRIA 4UV6A 4Z0FA 5I25A 5COEA 1GMNA 1GP9A 2F83A 2K13X 1Z40A 3HMSA 4UAOA 2LL4M 5CSQA 3ZLEA 2LL3A 1W81A 2Q8AA 2Z8VA 2J8LA 3ZWZA 2Z8WA 5EODA 2QJ2A 1I8NA
chains in the Genus database with same CATH superfamily
2YILA 2Q8BA 1W8KA 5CS5A 4R1BA 5CT2A 4Z09A 1GMOA 1YXEA 3SRJA 3HMRA 5CS9A 4APLA 5EOKA 2J8JA 2Y8RA 4A5TS 3SP8A 2YIPA 5CS1A 5CT3A 1BHTA 3MKPA 1HKYA 4R1AA 3HMTA 4R19A 2KL5A 2X2ZA 5CS3A 4R1CA 4DURA 4IUAA 5CP9A 5CT1A 2HGFA 4APMA 2YIOA 1NK1A 3HN4A 4Z0DA 2QJ4A 4Z0EA 3SRIA 4UV6A 4Z0FA 5I25A 5COEA 1GMNA 4YIVA 4YIZA 1GP9A 2F83A 2K13X 1Z40A 3HMSA 4UAOA 2LL4M 5CSQA 3ZLEA 2LL3A 1W81A 2Q8AA 2Z8VA 2J8LA 3ZWZA 2Z8WA 5EODA 2QJ2A 1I8NA
chains in the Genus database with same CATH topology
2YILA 2Q8BA 1W8KA 5CS5A 4R1BA 5CT2A 4Z09A 1GMOA 1YXEA 3SRJA 3HMRA 5CS9A 4APLA 5EOKA 2J8JA 2Y8RA 4A5TS 3SP8A 2YIPA 5CS1A 5CT3A 1BHTA 3MKPA 1HKYA 4R1AA 3HMTA 4R19A 2KL5A 2X2ZA 5CS3A 4R1CA 4DURA 4IUAA 5CP9A 5CT1A 2HGFA 4APMA 2YIOA 1NK1A 3HN4A 4Z0DA 2QJ4A 4Z0EA 3SRIA 4UV6A 4Z0FA 5I25A 5COEA 1GMNA 4YIVA 4YIZA 1GP9A 2F83A 2K13X 1Z40A 3HMSA 4UAOA 2LL4M 5CSQA 3ZLEA 2LL3A 1W81A 2Q8AA 2Z8VA 2J8LA 3ZWZA 2Z8WA 5EODA 2QJ2A 1I8NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YIL A;  2Q8B A;  1W8K A;  5CS5 A;  4R1B A;  5CT2 A;  4Z09 A;  1GMO A;  1YXE A;  3SRJ A;  3HMR A;  5CS9 A;  4APL A;  5EOK A;  2J8J A;  2Y8R A;  4A5T S;  3SP8 A;  2YIP A;  5CS1 A;  5CT3 A;  1BHT A;  3MKP A;  1HKY A;  4R1A A;  3HMT A;  4R19 A;  4DUR A;  2X2Z A;  5CS3 A;  4R1C A;  4IUA A;  5CP9 A;  5CT1 A;  2HGF A;  4APM A;  2YIO A;  1NK1 A;  3HN4 A;  4Z0D A;  2QJ4 A;  4Z0E A;  3SRI A;  4UV6 A;  4Z0F A;  5I25 A;  5COE A;  1GMN A;  1GP9 A;  2F83 A;  2K13 X;  1Z40 A;  3HMS A;  4UAO A;  2LL4 M;  5CSQ A;  3ZLE A;  2LL3 A;  1W81 A;  2Q8A A;  2Z8V A;  2J8L A;  3ZWZ A;  2Z8W A;  5EOD A;  2QJ2 A;  1I8N A; 
#chains in the Genus database with same CATH topology
 2YIL A;  2Q8B A;  1W8K A;  5CS5 A;  4R1B A;  5CT2 A;  4Z09 A;  1GMO A;  1YXE A;  3SRJ A;  3HMR A;  5CS9 A;  4APL A;  5EOK A;  2J8J A;  2Y8R A;  4A5T S;  3SP8 A;  2YIP A;  5CS1 A;  5CT3 A;  1BHT A;  3MKP A;  1HKY A;  4R1A A;  3HMT A;  4R19 A;  2KL5 A;  2X2Z A;  5CS3 A;  4R1C A;  4DUR A;  4IUA A;  5CP9 A;  5CT1 A;  2HGF A;  4APM A;  2YIO A;  1NK1 A;  3HN4 A;  4Z0D A;  2QJ4 A;  4Z0E A;  3SRI A;  4UV6 A;  4Z0F A;  5I25 A;  5COE A;  1GMN A;  4YIV A;  4YIZ A;  1GP9 A;  2F83 A;  2K13 X;  1Z40 A;  3HMS A;  4UAO A;  2LL4 M;  5CSQ A;  3ZLE A;  2LL3 A;  1W81 A;  2Q8A A;  2Z8V A;  2J8L A;  3ZWZ A;  2Z8W A;  5EOD A;  2QJ2 A;  1I8N A; 
#chains in the Genus database with same CATH homology
 2YIL A;  2Q8B A;  1W8K A;  5CS5 A;  4R1B A;  5CT2 A;  4Z09 A;  1GMO A;  1YXE A;  3SRJ A;  3HMR A;  5CS9 A;  4APL A;  5EOK A;  2J8J A;  2Y8R A;  4A5T S;  3SP8 A;  2YIP A;  5CS1 A;  5CT3 A;  1BHT A;  3MKP A;  1HKY A;  4R1A A;  3HMT A;  4R19 A;  2KL5 A;  2X2Z A;  5CS3 A;  4R1C A;  4DUR A;  4IUA A;  5CP9 A;  5CT1 A;  2HGF A;  4APM A;  2YIO A;  1NK1 A;  3HN4 A;  4Z0D A;  2QJ4 A;  4Z0E A;  3SRI A;  4UV6 A;  4Z0F A;  5I25 A;  5COE A;  1GMN A;  4YIV A;  4YIZ A;  1GP9 A;  2F83 A;  2K13 X;  1Z40 A;  3HMS A;  4UAO A;  2LL4 M;  5CSQ A;  3ZLE A;  2LL3 A;  1W81 A;  2Q8A A;  2Z8V A;  2J8L A;  3ZWZ A;  2Z8W A;  5EOD A;  2QJ2 A;  1I8N A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...