2LW6A

Solution structure of an avirulence protein avrpiz-t from pathogen magnaportheoryzae
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
80
structure length
80
Chain Sequence
SFVQCNHHLLYNGRHWGTIRKKAGWAVRFYEEKPGQPKRLVAICKNASPVHCNYLKCTNLAAGFSAGTSTDVLSSGTVGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the Magnaporthe oryzae avirulence protein AvrPiz-t.
pubmed doi rcsb
molecule tags Apoptosis
source organism Magnaporthe oryzae
molecule keywords AvrPiz-t protein
total genus 9
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2012-07-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.80 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2lw6A00
2LW6A
chains in the Genus database with same CATH superfamily
2JV2A 4UC4A 5D6YA 5B6CA 1R7RA 1O54A 5GLFA 2MM2A 2PJHB 3BQBA 5D6XA 3ZGZA 1WLFA 2GF7A 1E32A 5EQJB 3QC8A 2Q18X 5FTMA 3QQ7A 4AS1A 5FTKA 3HU3A 3CF2A 5FTJA 2B25A 4ARCA 1QCSA 2Q1DX 4KODA 2Q1AX 2KY9A 3LHDA 3QWZA 2MM0A 5C1BA 4AQ7A 5FTNA 5D6WA 3FPUA 5DYIA 4FIBA 2Q1CX 4KDLA 3ZJTA 3TIWA 2PWYA 2Q19X 1I9GA 1S3SA 3FPTA 3FPRA 4RV0A 4CQNA 4KLNA 3ZJVA 5ERGB 5CD1A 2QQRA 2XDPA 1ZC1A 2QQSA 5DYGA 3LGAA 5CCBA 3ZJUA 2YUJA 3MB5A 5FTLA 3HU2A 5CCXA 5C18A 2LW6A 4KO8A 5EPPA 2GFAA 4ARIA 1QDNA 4KDIA 1CZ5A 2YVLA 3HU1A 1CZ4A 1CR5A 3QQ8A
chains in the Genus database with same CATH topology
2JV2A 4UC4A 5D6YA 5B6CA 1R7RA 1O54A 5GLFA 2MM2A 2PJHB 3BQBA 5D6XA 3ZGZA 1WLFA 2GF7A 1E32A 5EQJB 3QC8A 2Q18X 5FTMA 3QQ7A 4AS1A 5FTKA 3HU3A 3CF2A 5FTJA 2B25A 4ARCA 1QCSA 2Q1DX 4KODA 2Q1AX 2KY9A 3LHDA 3QWZA 2MM0A 5C1BA 4AQ7A 5FTNA 5D6WA 3FPUA 5DYIA 4FIBA 2Q1CX 4KDLA 3ZJTA 3TIWA 2PWYA 2Q19X 1I9GA 1S3SA 3FPTA 3FPRA 4RV0A 4CQNA 4KLNA 3ZJVA 5ERGB 5CD1A 2QQRA 2XDPA 1ZC1A 2QQSA 5DYGA 3LGAA 5CCBA 3ZJUA 2YUJA 3MB5A 5FTLA 3HU2A 5CCXA 5C18A 2LW6A 4KO8A 5EPPA 2GFAA 4ARIA 1QDNA 4KDIA 1CZ5A 2YVLA 3HU1A 1CZ4A 1CR5A 3QQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LW6 A; 
#chains in the Genus database with same CATH topology
 2JV2 A;  4UC4 A;  5D6Y A;  5B6C A;  1R7R A;  1O54 A;  5GLF A;  2MM2 A;  2PJH B;  3BQB A;  5D6X A;  3ZGZ A;  1WLF A;  2GF7 A;  1E32 A;  5EQJ B;  3QC8 A;  2Q18 X;  5FTM A;  3QQ7 A;  4AS1 A;  5FTK A;  3HU3 A;  3CF2 A;  5FTJ A;  2B25 A;  4ARC A;  1QCS A;  2Q1D X;  4KOD A;  2Q1A X;  2KY9 A;  3LHD A;  3QWZ A;  2MM0 A;  5C1B A;  4AQ7 A;  5FTN A;  5D6W A;  3FPU A;  5DYI A;  4FIB A;  2Q1C X;  4KDL A;  3ZJT A;  3TIW A;  2PWY A;  2Q19 X;  1I9G A;  1S3S A;  3FPT A;  3FPR A;  4RV0 A;  4CQN A;  4KLN A;  3ZJV A;  5ERG B;  5CD1 A;  2QQR A;  2XDP A;  1ZC1 A;  2QQS A;  5DYG A;  3LGA A;  5CCB A;  3ZJU A;  2YUJ A;  3MB5 A;  5FTL A;  3HU2 A;  5CCX A;  5C18 A;  2LW6 A;  4KO8 A;  5EPP A;  2GFA A;  4ARI A;  1QDN A;  4KDI A;  1CZ5 A;  2YVL A;  3HU1 A;  1CZ4 A;  1CR5 A;  3QQ8 A; 
#chains in the Genus database with same CATH homology
 2JV2 A;  4UC4 A;  5D6Y A;  5B6C A;  1R7R A;  1O54 A;  5GLF A;  2MM2 A;  2PJH B;  3BQB A;  5D6X A;  3ZGZ A;  1WLF A;  2GF7 A;  1E32 A;  5EQJ B;  3QC8 A;  2Q18 X;  5FTM A;  3QQ7 A;  4AS1 A;  5FTK A;  3HU3 A;  3CF2 A;  5FTJ A;  2B25 A;  4ARC A;  1QCS A;  2Q1D X;  4KOD A;  2Q1A X;  2KY9 A;  3LHD A;  3QWZ A;  2MM0 A;  5C1B A;  4AQ7 A;  5FTN A;  5D6W A;  3FPU A;  5DYI A;  4FIB A;  2Q1C X;  4KDL A;  3ZJT A;  3TIW A;  2PWY A;  2Q19 X;  1I9G A;  1S3S A;  3FPT A;  3FPR A;  4RV0 A;  4CQN A;  4KLN A;  3ZJV A;  5ERG B;  5CD1 A;  2QQR A;  2XDP A;  1ZC1 A;  2QQS A;  5DYG A;  3LGA A;  5CCB A;  3ZJU A;  2YUJ A;  3MB5 A;  5FTL A;  3HU2 A;  5CCX A;  5C18 A;  2LW6 A;  4KO8 A;  5EPP A;  2GFA A;  4ARI A;  1QDN A;  4KDI A;  1CZ5 A;  2YVL A;  3HU1 A;  1CZ4 A;  1CR5 A;  3QQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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