2LW6A

Solution structure of an avirulence protein avrpiz-t from pathogen magnaportheoryzae
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
80
structure length
80
Chain Sequence
SFVQCNHHLLYNGRHWGTIRKKAGWAVRFYEEKPGQPKRLVAICKNASPVHCNYLKCTNLAAGFSAGTSTDVLSSGTVGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the Magnaporthe oryzae avirulence protein AvrPiz-t.
pubmed doi rcsb
molecule tags Apoptosis
source organism Magnaporthe oryzae
molecule keywords AvrPiz-t protein
total genus 9
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2012-07-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.80 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2lw6A00
2LW6A
chains in the Genus database with same CATH superfamily
5EQJB 3LHDA 2Q1DX 1ZC1A 3LGAA 3HU1A 5D6WA 3CF2A 5D6XA 4KLNA 3BQBA 2Q18X 5B6CA 4KO8A 1WLFA 5DYIA 1QCSA 2LW6A 1CZ5A 3QC8A 5FTLA 5EPPA 4FIBA 2YUJA 4CQNA 4AQ7A 3QQ7A 1CZ4A 2XDPA 3ZJTA 3FPRA 5FTJA 3FPUA 2Q19X 2Q1AX 5FTKA 2GFAA 1S3SA 3QQ8A 5FTNA 3TIWA 4KDLA 2KY9A 2MM0A 3HU2A 5DYGA 5C18A 1CR5A 5FTMA 1QDNA 3FPTA 2MM2A 5C1BA 4ARCA 3MB5A 2PWYA 1E32A 4UC4A 3ZJVA 3ZGZA 3QWZA 1I9GA 5ERGB 2QQRA 2QQSA 4AS1A 1R7RA 2GF7A 2YVLA 4ARIA 2Q1CX 5CCXA 5CD1A 5D6YA 2PJHB 3HU3A 2B25A 5CCBA 2JV2A 1O54A 4KDIA 4KODA 4RV0A 3ZJUA 5GLFA
chains in the Genus database with same CATH topology
5EQJB 3LHDA 2Q1DX 1ZC1A 3LGAA 3HU1A 5D6WA 3CF2A 5D6XA 4KLNA 3BQBA 2Q18X 5B6CA 4KO8A 1WLFA 5DYIA 1QCSA 2LW6A 1CZ5A 3QC8A 5FTLA 5EPPA 4FIBA 2YUJA 4CQNA 4AQ7A 3QQ7A 1CZ4A 2XDPA 3ZJTA 3FPRA 5FTJA 3FPUA 2Q19X 2Q1AX 5FTKA 2GFAA 1S3SA 3QQ8A 5FTNA 3TIWA 4KDLA 2KY9A 2MM0A 3HU2A 5DYGA 5C18A 1CR5A 5FTMA 1QDNA 3FPTA 2MM2A 5C1BA 4ARCA 3MB5A 2PWYA 1E32A 4UC4A 3ZJVA 3ZGZA 3QWZA 1I9GA 5ERGB 2QQRA 2QQSA 4AS1A 1R7RA 2GF7A 2YVLA 4ARIA 2Q1CX 5CCXA 5CD1A 5D6YA 2PJHB 3HU3A 2B25A 5CCBA 2JV2A 1O54A 4KDIA 4KODA 4RV0A 3ZJUA 5GLFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LW6 A; 
#chains in the Genus database with same CATH topology
 5EQJ B;  3LHD A;  2Q1D X;  1ZC1 A;  3LGA A;  3HU1 A;  5D6W A;  3CF2 A;  5D6X A;  4KLN A;  3BQB A;  2Q18 X;  5B6C A;  4KO8 A;  1WLF A;  5DYI A;  1QCS A;  2LW6 A;  1CZ5 A;  3QC8 A;  5FTL A;  5EPP A;  4FIB A;  2YUJ A;  4CQN A;  4AQ7 A;  3QQ7 A;  1CZ4 A;  2XDP A;  3ZJT A;  3FPR A;  5FTJ A;  3FPU A;  2Q19 X;  2Q1A X;  5FTK A;  2GFA A;  1S3S A;  3QQ8 A;  5FTN A;  3TIW A;  4KDL A;  2KY9 A;  2MM0 A;  3HU2 A;  5DYG A;  5C18 A;  1CR5 A;  5FTM A;  1QDN A;  3FPT A;  2MM2 A;  5C1B A;  4ARC A;  3MB5 A;  2PWY A;  1E32 A;  4UC4 A;  3ZJV A;  3ZGZ A;  3QWZ A;  1I9G A;  5ERG B;  2QQR A;  2QQS A;  4AS1 A;  1R7R A;  2GF7 A;  2YVL A;  4ARI A;  2Q1C X;  5CCX A;  5CD1 A;  5D6Y A;  2PJH B;  3HU3 A;  2B25 A;  5CCB A;  2JV2 A;  1O54 A;  4KDI A;  4KOD A;  4RV0 A;  3ZJU A;  5GLF A; 
#chains in the Genus database with same CATH homology
 5EQJ B;  3LHD A;  2Q1D X;  1ZC1 A;  3LGA A;  3HU1 A;  5D6W A;  3CF2 A;  5D6X A;  4KLN A;  3BQB A;  2Q18 X;  5B6C A;  4KO8 A;  1WLF A;  5DYI A;  1QCS A;  2LW6 A;  1CZ5 A;  3QC8 A;  5FTL A;  5EPP A;  4FIB A;  2YUJ A;  4CQN A;  4AQ7 A;  3QQ7 A;  1CZ4 A;  2XDP A;  3ZJT A;  3FPR A;  5FTJ A;  3FPU A;  2Q19 X;  2Q1A X;  5FTK A;  2GFA A;  1S3S A;  3QQ8 A;  5FTN A;  3TIW A;  4KDL A;  2KY9 A;  2MM0 A;  3HU2 A;  5DYG A;  5C18 A;  1CR5 A;  5FTM A;  1QDN A;  3FPT A;  2MM2 A;  5C1B A;  4ARC A;  3MB5 A;  2PWY A;  1E32 A;  4UC4 A;  3ZJV A;  3ZGZ A;  3QWZ A;  1I9G A;  5ERG B;  2QQR A;  2QQS A;  4AS1 A;  1R7R A;  2GF7 A;  2YVL A;  4ARI A;  2Q1C X;  5CCX A;  5CD1 A;  5D6Y A;  2PJH B;  3HU3 A;  2B25 A;  5CCB A;  2JV2 A;  1O54 A;  4KDI A;  4KOD A;  4RV0 A;  3ZJU A;  5GLF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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