3QQ7A

Crystal structure of the p97 n-terminal domain
Total Genus 46
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
168
structure length
168
Chain Sequence
KNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Hierarchical Binding of Cofactors to the AAA ATPase p97.
pubmed doi rcsb
molecule tags Transport protein
source organism Homo sapiens
molecule keywords Transitional endoplasmic reticulum ATPase
total genus 46
structure length 168
sequence length 168
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qq7A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qq7A02
4QIWA 3FKIA 1CZ5A 1AW8B 2V3VA 2WB1A 4AYBA 4KDIA 1PT1A 2JIRA 4RV0A 3QQ8A 3QWZA 2VPWA 4CRYG 1KQGA 1SIWA 1OGYA 1QDNA 3TIWA 4AZDA 2R92A 1E60A 2DMRA 5GLFA 3HU2A 3GTLA 2JIQA 5FTMA 2PJHB 4KODA 2VUMA 5B6CA 5T5MD 1KQFA 3IR7A 1TWCA 1PQEA 1PPYA 1SFOA 2NYAA 1QCSA 1E61A 2YU9A 1PYUB 2R93A 2JA7A 1R7RA 3GTOA 3HU1A 4DMRA 1IW7D 1YLEA 2R7ZA 1S3SA 2NVYA 5T5ID 1R27A 2JA5A 5EPPA 2EEOB 4CS0A 1ZC1A 1Y1WA 1FDOA 2NAPA 2NVXA 1DMRA 4GA6A 2JV2A 1R9TA 3GTGA 1UHDA 2VPZA 1FDIA 2PMZA 1CZ4A 1EU1A 1CR5A 3CQZA 5FTLA 2V45A 4AONB 3GTKA 3IR5A 1PYQA 2JIOA 5C1BA 3QC8A 3TM7B 4AAYA 2JIPA 3GTQA 1VC3B 5FTNA 4D7ZB 1TWGA 1PQFA 3HU3A 2WAQA 2IV2X 1I3QA 1WCMA 2VPXA 5FTJA 1PQHA 3ML1A 1Q16A 3GTJA 3GTPA 2B63A 3IR6A 1TWHA 1G8JA 5FTKA 1H5NA 1E18A 3QQ7A 1AA6A 1TMOA 3H0GA 4KDLA 1UHEA 4C2MA 3CF2A 3HKZA 1H0HA 1E32A 4CRZA 1Y1VA 2E7ZA 1PT0A 4KLNA 1G8KA 1WLFA 4GA5A 2VPYA 1I50A 2E2IA 5DYIA 3O5AA 1TWAA 2Y0SA 2JIMA 1Y4ZA 5C18A 2YUJA 3DMRA 1E5VA 2JA6A 4AOKB 3PLXB 3OUGA 2C45A 1DMSA 1TWFA 2KI8A 5DYGA 1K83A 4KO8A 2E2HA 1Y5IA 3GTMA
chains in the Genus database with same CATH superfamily
2ENGA 2CW0D 4QIWA 3FKIA 1CZ5A 4JCWA 1WC2A 5GM9A 3X2IA 1AW8B 3FPUA 2V3VA 2WB1A 4FERA 4KDIA 1PT1A 4AYBA 2YVLA 2JIRA 3D30A 2GF7A 4RV0A 4CQNA 3QQ8A 1I9GA 3X2JA 3ZGZA 3QWZA 1ZYRD 2VPWA 4CRYG 2BH0A 2KQAA 1KQGA 1SIWA 5H4UA 1OGYA 1QDNA 1YNJD 3TIWA 4AZDA 2R92A 3ZJTA 1E60A 2PICA 2DMRA 3X2MA 2A6ED 2GAEA 1L8FA 5GLFA 3HU2A 3GTLA 2JIQA 5FTMA 2PJHB 4KODA 4FG4A 3SULA 3X2GA 3ENGA 5B6CA 5T5MD 1KQFA 3IR7A 1TWCA 2VUMA 2BE5D 1HD5A 3SUKA 1PQEA 1PPYA 1SFOA 2NYAA 1QCSA 4JJOA 1E61A 2Q19X 2YU9A 1PYUB 2R93A 2JA7A 1R7RA 3GTOA 4ARIA 3HU1A 3X2HA 4DMRA 1IW7D 1YLEA 5CCBA 2R7ZA 1S3SA 2NVYA 5T5ID 1R27A 2JA5A 5EPPA 2EEOB 2GFAA 4AS1A 1ZC1A 4CS0A 1Y1WA 1OA9A 2G6GA 1FDOA 2NAPA 3X2LA 2NVXA 1DMRA 4GA6A 2JV2A 4L48A 1R9TA 1UHDA 3GTGA 2VPZA 1FDIA 5CD1A 2PMZA 1CZ4A 1EU1A 3ZJUA 1CR5A 4AQ7A 3CQZA 4FG2A 5FTLA 2V45A 2KY9A 4AONB 3GTKA 5CCXA 3IR5A 1PYQA 2JIOA 5C1BA 3X2PA 3QC8A 3M3GA 3TM7B 2JIPA 4AAYA 4ENGA 1VC3B 5FTNA 3GTQA 2MM2A 2A68D 1OA7A 4JP6A 4D7ZB 2MM0A 2Q1CX 1TWGA 1PQFA 3LGAA 5EQJB 1BW3A 3HU3A 2PI8A 4FIBA 2WAQA 2XDPA 2IV2X 1I3QA 1WCMA 1YNND 4ARCA 2VPXA 5FTJA 1PQHA 3ML1A 2A69D 2G5DA 1O54A 1Q16A 2HCZX 3GTJA 2Q1DX 3GTPA 4AVRA 2B63A 3IR6A 3X2KA 2PWYA 1TWHA 1G8JA 5FTKA 5D6WA 3LHDA 1H5NA 1E18A 2B25A 3QQ7A 1AA6A 3MB5A 1TMOA 3H0GA 1SMYD 2LW6A 3X2NA 2O5JD 2QQRA 4KDLA 2QQSA 1UHEA 4ZM7A 2PJJA 5GLYA 3SUMA 4C2MA 3CF2A 3HKZA 1H0HA 3SUJA 1E32A 4CRZA 4NOHA 5ERGB 2PNWA 3FPRA 3BQBA 1Y1VA 2E7ZA 3FPTA 1PT0A 2A6HD 4KLNA 1G8KA 1WLFA 4GA5A 2VPYA 1I50A 2E2IA 5DYIA 2AE0X 3CZBA 1TWAA 3O5AA 2Y0SA 2JIMA 5GLXA 5D6YA 2Q1AX 1Y4ZA 5C18A 2Q18X 1N10A 2YUJA 3DMRA 1E5VA 4JS7A 2JA6A 4AOKB 3ZJVA 3PLXB 3OUGA 2C45A 1DMSA 4FFTA 1BW4A 4JP7A 1TWFA 4UC4A 2KI8A 5DYGA 1K83A 4KO8A 3X2OA 2E2HA 5D6XA 1Y5IA 3GTMA
chains in the Genus database with same CATH topology
2CW0D 4QIWA 3FKIA 1CZ5A 1AW8B 3FPUA 2V3VA 2WB1A 4AYBA 4KDIA 1PT1A 2YVLA 2JIRA 2GF7A 4RV0A 4CQNA 3QQ8A 1I9GA 3ZGZA 3QWZA 1ZYRD 2VPWA 4CRYG 1KQGA 1SIWA 1OGYA 1QDNA 1YNJD 3TIWA 4AZDA 2R92A 3ZJTA 1E60A 2PICA 2DMRA 2A6ED 2GAEA 5GLFA 3HU2A 3GTLA 2JIQA 5FTMA 2PJHB 4KODA 2VUMA 5B6CA 5T5MD 1KQFA 3IR7A 1TWCA 2BE5D 1PQEA 1PPYA 1SFOA 2NYAA 1QCSA 2Q19X 1E61A 2YU9A 1PYUB 2R93A 2JA7A 1R7RA 3GTOA 4ARIA 3HU1A 4DMRA 1IW7D 1YLEA 5CCBA 2R7ZA 1S3SA 2NVYA 5T5ID 1R27A 2JA5A 5EPPA 2EEOB 2GFAA 4AS1A 1ZC1A 4CS0A 1Y1WA 2G6GA 1FDOA 2NAPA 2NVXA 1DMRA 4GA6A 2JV2A 1R9TA 3GTGA 1UHDA 2VPZA 1FDIA 5CD1A 2PMZA 1CZ4A 1EU1A 3ZJUA 1CR5A 4AQ7A 3CQZA 5FTLA 2V45A 2KY9A 4AONB 3GTKA 5CCXA 3IR5A 1PYQA 2JIOA 5C1BA 3QC8A 3TM7B 4AAYA 2JIPA 3GTQA 1VC3B 5FTNA 2MM2A 2A68D 4D7ZB 2MM0A 2Q1CX 1TWGA 1PQFA 3LGAA 5EQJB 3HU3A 2PI8A 4FIBA 2WAQA 2XDPA 2IV2X 1I3QA 1WCMA 1YNND 4ARCA 2VPXA 5FTJA 1PQHA 3ML1A 2A69D 2G5DA 1O54A 1Q16A 3GTJA 2Q1DX 3GTPA 2B63A 3IR6A 2PWYA 1TWHA 1G8JA 5FTKA 5D6WA 3LHDA 1H5NA 1E18A 2B25A 3QQ7A 1AA6A 3MB5A 1TMOA 3H0GA 1SMYD 2LW6A 2O5JD 2QQRA 4KDLA 2QQSA 1UHEA 2PJJA 4C2MA 3CF2A 3HKZA 1H0HA 1E32A 4CRZA 4NOHA 5ERGB 2PNWA 3FPRA 3BQBA 1Y1VA 2E7ZA 3FPTA 1PT0A 2A6HD 4KLNA 1G8KA 1WLFA 4GA5A 2VPYA 1I50A 2E2IA 5DYIA 2AE0X 3CZBA 1TWAA 3O5AA 2Y0SA 2JIMA 5D6YA 2Q1AX 1Y4ZA 5C18A 2Q18X 2YUJA 3DMRA 1E5VA 2JA6A 4AOKB 3ZJVA 3PLXB 3OUGA 2C45A 1DMSA 1TWFA 4UC4A 2KI8A 5DYGA 1K83A 4KO8A 2E2HA 5D6XA 1Y5IA 3GTMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QIW A;  3FKI A;  1CZ5 A;  1AW8 B;  2V3V A;  2WB1 A;  4AYB A;  4KDI A;  1PT1 A;  2JIR A;  4RV0 A;  3QQ8 A;  3QWZ A;  2VPW A;  4CRY G;  1KQG A;  1SIW A;  1OGY A;  1QDN A;  3TIW A;  4AZD A;  2R92 A;  1E60 A;  2DMR A;  5GLF A;  3HU2 A;  3GTL A;  2JIQ A;  5FTM A;  2PJH B;  4KOD A;  2VUM A;  5B6C A;  5T5M D;  1KQF A;  3IR7 A;  1TWC A;  1PQE A;  1PPY A;  1SFO A;  2NYA A;  1QCS A;  1E61 A;  2YU9 A;  1PYU B;  2R93 A;  2JA7 A;  1R7R A;  3GTO A;  3HU1 A;  4DMR A;  1IW7 D;  1YLE A;  2R7Z A;  1S3S A;  2NVY A;  5T5I D;  1R27 A;  2JA5 A;  5EPP A;  2EEO B;  4CS0 A;  1ZC1 A;  1Y1W A;  1FDO A;  2NAP A;  2NVX A;  1DMR A;  4GA6 A;  2JV2 A;  1R9T A;  3GTG A;  1UHD A;  2VPZ A;  1FDI A;  2PMZ A;  1CZ4 A;  1EU1 A;  1CR5 A;  3CQZ A;  5FTL A;  2V45 A;  4AON B;  3GTK A;  3IR5 A;  1PYQ A;  2JIO A;  5C1B A;  3QC8 A;  3TM7 B;  4AAY A;  2JIP A;  3GTQ A;  1VC3 B;  5FTN A;  4D7Z B;  1TWG A;  1PQF A;  3HU3 A;  2WAQ A;  2IV2 X;  1I3Q A;  1WCM A;  2VPX A;  5FTJ A;  1PQH A;  3ML1 A;  1Q16 A;  3GTJ A;  3GTP A;  2B63 A;  3IR6 A;  1TWH A;  1G8J A;  5FTK A;  1H5N A;  1E18 A;  3QQ7 A;  1AA6 A;  1TMO A;  3H0G A;  4KDL A;  1UHE A;  4C2M A;  3CF2 A;  3HKZ A;  1H0H A;  1E32 A;  4CRZ A;  1Y1V A;  2E7Z A;  1PT0 A;  4KLN A;  1G8K A;  1WLF A;  4GA5 A;  2VPY A;  1I50 A;  2E2I A;  5DYI A;  3O5A A;  1TWA A;  2Y0S A;  2JIM A;  1Y4Z A;  5C18 A;  2YUJ A;  3DMR A;  1E5V A;  2JA6 A;  4AOK B;  3PLX B;  3OUG A;  2C45 A;  1DMS A;  1TWF A;  2KI8 A;  5DYG A;  1K83 A;  4KO8 A;  2E2H A;  1Y5I A;  3GTM A; 
#chains in the Genus database with same CATH topology
 2ENG A;  2CW0 D;  4QIW A;  3FKI A;  1CZ5 A;  4JCW A;  1WC2 A;  5GM9 A;  3X2I A;  1AW8 B;  3FPU A;  2V3V A;  2WB1 A;  4FER A;  4KDI A;  1PT1 A;  4AYB A;  2YVL A;  2JIR A;  3D30 A;  2GF7 A;  4RV0 A;  4CQN A;  3QQ8 A;  1I9G A;  3X2J A;  3ZGZ A;  3QWZ A;  1ZYR D;  2VPW A;  4CRY G;  2BH0 A;  2KQA A;  1KQG A;  1SIW A;  5H4U A;  1OGY A;  1QDN A;  1YNJ D;  3TIW A;  4AZD A;  2R92 A;  3ZJT A;  1E60 A;  2PIC A;  2DMR A;  3X2M A;  2A6E D;  2GAE A;  1L8F A;  5GLF A;  3HU2 A;  3GTL A;  2JIQ A;  5FTM A;  2PJH B;  4KOD A;  4FG4 A;  3SUL A;  3X2G A;  3ENG A;  5B6C A;  5T5M D;  1KQF A;  3IR7 A;  1TWC A;  2VUM A;  2BE5 D;  1HD5 A;  3SUK A;  1PQE A;  1PPY A;  1SFO A;  2NYA A;  1QCS A;  4JJO A;  1E61 A;  2Q19 X;  2YU9 A;  1PYU B;  2R93 A;  2JA7 A;  1R7R A;  3GTO A;  4ARI A;  3HU1 A;  3X2H A;  4DMR A;  1IW7 D;  1YLE A;  5CCB A;  2R7Z A;  1S3S A;  2NVY A;  5T5I D;  1R27 A;  2JA5 A;  5EPP A;  2EEO B;  2GFA A;  4AS1 A;  1ZC1 A;  4CS0 A;  1Y1W A;  1OA9 A;  2G6G A;  1FDO A;  2NAP A;  3X2L A;  2NVX A;  1DMR A;  4GA6 A;  2JV2 A;  4L48 A;  1R9T A;  1UHD A;  3GTG A;  2VPZ A;  1FDI A;  5CD1 A;  2PMZ A;  1CZ4 A;  1EU1 A;  3ZJU A;  1CR5 A;  4AQ7 A;  3CQZ A;  4FG2 A;  5FTL A;  2V45 A;  2KY9 A;  4AON B;  3GTK A;  5CCX A;  3IR5 A;  1PYQ A;  2JIO A;  5C1B A;  3X2P A;  3QC8 A;  3M3G A;  3TM7 B;  2JIP A;  4AAY A;  4ENG A;  1VC3 B;  5FTN A;  3GTQ A;  2MM2 A;  2A68 D;  1OA7 A;  4JP6 A;  4D7Z B;  2MM0 A;  2Q1C X;  1TWG A;  1PQF A;  3LGA A;  5EQJ B;  1BW3 A;  3HU3 A;  2PI8 A;  4FIB A;  2WAQ A;  2XDP A;  2IV2 X;  1I3Q A;  1WCM A;  1YNN D;  4ARC A;  2VPX A;  5FTJ A;  1PQH A;  3ML1 A;  2A69 D;  2G5D A;  1O54 A;  1Q16 A;  2HCZ X;  3GTJ A;  2Q1D X;  3GTP A;  4AVR A;  2B63 A;  3IR6 A;  3X2K A;  2PWY A;  1TWH A;  1G8J A;  5FTK A;  5D6W A;  3LHD A;  1H5N A;  1E18 A;  2B25 A;  3QQ7 A;  1AA6 A;  3MB5 A;  1TMO A;  3H0G A;  1SMY D;  2LW6 A;  3X2N A;  2O5J D;  2QQR A;  4KDL A;  2QQS A;  1UHE A;  4ZM7 A;  2PJJ A;  5GLY A;  3SUM A;  4C2M A;  3CF2 A;  3HKZ A;  1H0H A;  3SUJ A;  1E32 A;  4CRZ A;  4NOH A;  5ERG B;  2PNW A;  3FPR A;  3BQB A;  1Y1V A;  2E7Z A;  3FPT A;  1PT0 A;  2A6H D;  4KLN A;  1G8K A;  1WLF A;  4GA5 A;  2VPY A;  1I50 A;  2E2I A;  5DYI A;  2AE0 X;  3CZB A;  1TWA A;  3O5A A;  2Y0S A;  2JIM A;  5GLX A;  5D6Y A;  2Q1A X;  1Y4Z A;  5C18 A;  2Q18 X;  1N10 A;  2YUJ A;  3DMR A;  1E5V A;  4JS7 A;  2JA6 A;  4AOK B;  3ZJV A;  3PLX B;  3OUG A;  2C45 A;  1DMS A;  4FFT A;  1BW4 A;  4JP7 A;  1TWF A;  4UC4 A;  2KI8 A;  5DYG A;  1K83 A;  4KO8 A;  3X2O A;  2E2H A;  5D6X A;  1Y5I A;  3GTM A; 
#chains in the Genus database with same CATH homology
 2CW0 D;  4QIW A;  3FKI A;  1CZ5 A;  1AW8 B;  3FPU A;  2V3V A;  2WB1 A;  4AYB A;  4KDI A;  1PT1 A;  2YVL A;  2JIR A;  2GF7 A;  4RV0 A;  4CQN A;  3QQ8 A;  1I9G A;  3ZGZ A;  3QWZ A;  1ZYR D;  2VPW A;  4CRY G;  1KQG A;  1SIW A;  1OGY A;  1QDN A;  1YNJ D;  3TIW A;  4AZD A;  2R92 A;  3ZJT A;  1E60 A;  2PIC A;  2DMR A;  2A6E D;  2GAE A;  5GLF A;  3HU2 A;  3GTL A;  2JIQ A;  5FTM A;  2PJH B;  4KOD A;  2VUM A;  5B6C A;  5T5M D;  1KQF A;  3IR7 A;  1TWC A;  2BE5 D;  1PQE A;  1PPY A;  1SFO A;  2NYA A;  1QCS A;  2Q19 X;  1E61 A;  2YU9 A;  1PYU B;  2R93 A;  2JA7 A;  1R7R A;  3GTO A;  4ARI A;  3HU1 A;  4DMR A;  1IW7 D;  1YLE A;  5CCB A;  2R7Z A;  1S3S A;  2NVY A;  5T5I D;  1R27 A;  2JA5 A;  5EPP A;  2EEO B;  2GFA A;  4AS1 A;  1ZC1 A;  4CS0 A;  1Y1W A;  2G6G A;  1FDO A;  2NAP A;  2NVX A;  1DMR A;  4GA6 A;  2JV2 A;  1R9T A;  3GTG A;  1UHD A;  2VPZ A;  1FDI A;  5CD1 A;  2PMZ A;  1CZ4 A;  1EU1 A;  3ZJU A;  1CR5 A;  4AQ7 A;  3CQZ A;  5FTL A;  2V45 A;  2KY9 A;  4AON B;  3GTK A;  5CCX A;  3IR5 A;  1PYQ A;  2JIO A;  5C1B A;  3QC8 A;  3TM7 B;  4AAY A;  2JIP A;  3GTQ A;  1VC3 B;  5FTN A;  2MM2 A;  2A68 D;  4D7Z B;  2MM0 A;  2Q1C X;  1TWG A;  1PQF A;  3LGA A;  5EQJ B;  3HU3 A;  2PI8 A;  4FIB A;  2WAQ A;  2XDP A;  2IV2 X;  1I3Q A;  1WCM A;  1YNN D;  4ARC A;  2VPX A;  5FTJ A;  1PQH A;  3ML1 A;  2A69 D;  2G5D A;  1O54 A;  1Q16 A;  3GTJ A;  2Q1D X;  3GTP A;  2B63 A;  3IR6 A;  2PWY A;  1TWH A;  1G8J A;  5FTK A;  5D6W A;  3LHD A;  1H5N A;  1E18 A;  2B25 A;  3QQ7 A;  1AA6 A;  3MB5 A;  1TMO A;  3H0G A;  1SMY D;  2LW6 A;  2O5J D;  2QQR A;  4KDL A;  2QQS A;  1UHE A;  2PJJ A;  4C2M A;  3CF2 A;  3HKZ A;  1H0H A;  1E32 A;  4CRZ A;  4NOH A;  5ERG B;  2PNW A;  3FPR A;  3BQB A;  1Y1V A;  2E7Z A;  3FPT A;  1PT0 A;  2A6H D;  4KLN A;  1G8K A;  1WLF A;  4GA5 A;  2VPY A;  1I50 A;  2E2I A;  5DYI A;  2AE0 X;  3CZB A;  1TWA A;  3O5A A;  2Y0S A;  2JIM A;  5D6Y A;  2Q1A X;  1Y4Z A;  5C18 A;  2Q18 X;  2YUJ A;  3DMR A;  1E5V A;  2JA6 A;  4AOK B;  3ZJV A;  3PLX B;  3OUG A;  2C45 A;  1DMS A;  1TWF A;  4UC4 A;  2KI8 A;  5DYG A;  1K83 A;  4KO8 A;  2E2H A;  5D6X A;  1Y5I A;  3GTM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...