4KDIA

Crystal structure of p97/vcp n in complex with otu1 ubxl
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
165
structure length
157
Chain Sequence
NRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/hydrolase
molecule keywords Transitional endoplasmic reticulum ATPase
publication title Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
pubmed doi rcsb
source organism Homo sapiens
total genus 46
structure length 157
sequence length 165
chains with identical sequence B
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4kdiA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4kdiA02
4KDIA 2B63A 1CR5A 5C1BA 1H5NA 3H0GA 1K83A 1Q16A 1WLFA 3HU3A 1R7RA 4AZDA 4CRZA 3IR6A 3GTKA 2JA6A 3GTPA 1TWFA 2VPXA 5GLFA 1FDIA 2KI8A 2PJHB 3ML1A 2V3VA 4AOKB 3GTGA 1H0HA 5T5MD 1TWGA 5DYGA 1Y4ZA 1WCMA 2JIRA 2VPYA 2E2HA 1I3QA 1R27A 1CZ4A 1SIWA 3O5AA 1AA6A 2VUMA 2JIMA 1E18A 3GTOA 2WB1A 5FTLA 1KQFA 2NAPA 1AW8B 5B6CA 2IV2X 4C2MA 4D7ZB 1OGYA 5FTMA 1Y1WA 2E7ZA 1YLEA 2JA7A 1PYQA 3CQZA 3PLXB 4KLNA 4QIWA 2VPZA 5DYIA 3HU1A 3QWZA 2Y0SA 1UHDA 3HKZA 4RV0A 2JIQA 1Y5IA 1R9TA 2DMRA 1SFOA 4DMRA 3GTMA 1EU1A 1DMRA 1G8JA 1E61A 1TWCA 4KO8A 2EEOB 5EPPA 1Y1VA 1QDNA 4AYBA 1PYUB 1TMOA 2YU9A 3HU2A 1CZ5A 1PQHA 2VPWA 4GA5A 2E2IA 2JV2A 2R92A 3GTJA 1S3SA 1E5VA 2NVXA 1E60A 1DMSA 1G8KA 3QQ7A 3GTQA 3IR7A 2JA5A 4CS0A 3DMRA 5T5ID 1KQGA 3CF2A 2JIOA 4GA6A 2NYAA 3FKIA 2PMZA 2C45A 5C18A 1ZC1A 1I50A 4AAYA 2YUJA 3QQ8A 4CRYG 1E32A 2JIPA 1PQFA 1PT1A 1VC3B 3TIWA 2R7ZA 1PT0A 1IW7D 1PPYA 3TM7B 1UHEA 4KDLA 3QC8A 3OUGA 1FDOA 2R93A 2WAQA 5FTKA 4AONB 1QCSA 2NVYA 1PQEA 5FTNA 2V45A 1TWHA 3IR5A 3GTLA 5FTJA 4KODA 1TWAA
chains in the Genus database with same CATH superfamily
4KDIA 2B63A 1CR5A 1HD5A 2LW6A 5C1BA 1H5NA 3H0GA 3SUKA 1K83A 1Q16A 4AS1A 1WLFA 3HU3A 1R7RA 4AZDA 4CRZA 3IR6A 3GTKA 3FPUA 5CD1A 2MM0A 3SUMA 2JA6A 3GTPA 4JP7A 1TWFA 2VPXA 5GLFA 3LHDA 1YNND 3ZJUA 2PJJA 1FDIA 2G5DA 2KI8A 2PJHB 2V3VA 3ML1A 4JCWA 4AOKB 3GTGA 1H0HA 2QQSA 5T5MD 4ARIA 4FG4A 1TWGA 5DYGA 1Y4ZA 1N10A 1O54A 1WCMA 2JIRA 3BQBA 2VPYA 2CW0D 2E2HA 1I3QA 1R27A 4NOHA 3X2NA 4ZM7A 2A69D 1CZ4A 1SIWA 3O5AA 1AA6A 2VUMA 2JIMA 3CZBA 1E18A 3ZJVA 2AE0X 3X2PA 1YNJD 2BE5D 2WB1A 5GLYA 3X2KA 1ZYRD 4FG2A 3GTOA 4L48A 2GAEA 5FTLA 5D6YA 1KQFA 2NAPA 1AW8B 5B6CA 1WC2A 2IV2X 4C2MA 4D7ZB 4JP6A 1OGYA 5FTMA 1Y1WA 2E7ZA 1YLEA 4CQNA 2JA7A 1PYQA 3CQZA 3PLXB 4KLNA 4QIWA 2VPZA 2PNWA 5DYIA 4FIBA 2GFAA 3HU1A 3QWZA 2Y0SA 1OA9A 1UHDA 3HKZA 2JIQA 1OA7A 1Y5IA 2DMRA 4RV0A 1R9TA 1SFOA 4DMRA 2Q1DX 3MB5A 3FPRA 3GTMA 1EU1A 2QQRA 1DMRA 3ZGZA 2A6ED 5D6WA 1G8JA 1E61A 1TWCA 4KO8A 4AQ7A 2EEOB 2PWYA 5EPPA 1Y1VA 1QDNA 2Q18X 4AYBA 5ERGB 1PYUB 1TMOA 2YU9A 3HU2A 1CZ5A 1PQHA 2VPWA 1SMYD 2B25A 4GA5A 2E2IA 3X2IA 1L8FA 2JV2A 3X2LA 3GTJA 1S3SA 1E5VA 2R92A 4ARCA 2O5JD 2NVXA 1E60A 2BH0A 1DMSA 1G8KA 3LGAA 3QQ7A 3GTQA 3IR7A 2JA5A 4CS0A 3DMRA 5CCXA 2XDPA 5D6XA 2G6GA 5T5ID 1KQGA 3CF2A 2JIOA 2Q1AX 5EQJB 4GA6A 2NYAA 3D30A 3X2HA 3FKIA 2PMZA 2A68D 2KY9A 4FERA 2C45A 5C18A 1ZC1A 1I50A 4AAYA 2YUJA 2Q19X 3M3GA 3QQ8A 2ENGA 4FFTA 5GLXA 2HCZX 1E32A 3X2GA 3X2JA 2JIPA 4CRYG 3ZJTA 1PQFA 5CCBA 2PI8A 2KQAA 4AVRA 1PT1A 4JJOA 1VC3B 2A6HD 3SUJA 2MM2A 3TIWA 4ENGA 3X2MA 2R7ZA 1PT0A 1IW7D 1BW4A 1I9GA 4UC4A 1PPYA 3TM7B 1UHEA 4KDLA 3QC8A 5GM9A 3FPTA 3SULA 3OUGA 1FDOA 2R93A 2WAQA 5FTKA 3X2OA 4AONB 1BW3A 2YVLA 1QCSA 2NVYA 1PQEA 2Q1CX 4JS7A 2GF7A 3ENGA 5FTNA 2PICA 2V45A 1TWHA 3IR5A 3GTLA 5FTJA 4KODA 5H4UA 1TWAA
chains in the Genus database with same CATH topology
4KDIA 2B63A 1CR5A 2LW6A 5C1BA 1H5NA 3H0GA 1K83A 1Q16A 4AS1A 1WLFA 3HU3A 1R7RA 4AZDA 4CRZA 3IR6A 3GTKA 5CD1A 2MM0A 2JA6A 3GTPA 3ZJUA 1TWFA 2VPXA 5GLFA 3LHDA 1YNND 2PJJA 1FDIA 2G5DA 2KI8A 2PJHB 2V3VA 3ML1A 4AOKB 3GTGA 1H0HA 2QQSA 5T5MD 4ARIA 1TWGA 5DYGA 1Y4ZA 1WCMA 2JIRA 3BQBA 2VPYA 2CW0D 2E2HA 1I3QA 1R27A 4NOHA 2A69D 1CZ4A 1SIWA 3O5AA 1AA6A 2VUMA 2JIMA 3CZBA 1E18A 3ZJVA 2AE0X 3GTOA 1YNJD 2BE5D 2WB1A 1ZYRD 2GAEA 5FTLA 5D6YA 1KQFA 2NAPA 1AW8B 5B6CA 2IV2X 4C2MA 4D7ZB 1OGYA 5FTMA 1Y1WA 2E7ZA 1YLEA 4CQNA 2JA7A 1PYQA 3CQZA 3PLXB 4KLNA 4QIWA 2VPZA 2PNWA 5DYIA 4FIBA 2GFAA 3HU1A 3QWZA 2Y0SA 1UHDA 3HKZA 4RV0A 2JIQA 1Y5IA 1R9TA 2DMRA 1SFOA 1O54A 2Q1DX 4DMRA 3FPUA 3MB5A 3FPRA 3GTMA 1EU1A 2QQRA 1DMRA 3ZGZA 2A6ED 5D6WA 1G8JA 1E61A 1TWCA 4KO8A 4AQ7A 2EEOB 2PWYA 5EPPA 1Y1VA 1QDNA 2Q18X 4AYBA 5ERGB 1PYUB 1TMOA 2YU9A 3HU2A 1CZ5A 1PQHA 2VPWA 1SMYD 2B25A 4GA5A 2E2IA 2JV2A 4ARCA 2R92A 3GTJA 1S3SA 1E5VA 2O5JD 2NVXA 1E60A 1DMSA 1G8KA 3LGAA 3QQ7A 3GTQA 3IR7A 2JA5A 4CS0A 3DMRA 5CCXA 2XDPA 5D6XA 2G6GA 5T5ID 1KQGA 3CF2A 2JIOA 2Q1AX 5EQJB 4GA6A 2NYAA 2KY9A 3FKIA 2PMZA 2A68D 2C45A 5C18A 1ZC1A 1I50A 4AAYA 2YUJA 2Q19X 3QQ8A 4CRYG 1E32A 2JIPA 3ZJTA 1PQFA 5CCBA 2PI8A 1PT1A 1VC3B 2A6HD 2MM2A 3TIWA 2R7ZA 1PT0A 1IW7D 4UC4A 1I9GA 1PPYA 3TM7B 1UHEA 4KDLA 3QC8A 3FPTA 3OUGA 1FDOA 2R93A 2WAQA 5FTKA 4AONB 2YVLA 1QCSA 2NVYA 1PQEA 2Q1CX 2GF7A 5FTNA 2PICA 2V45A 1TWHA 3IR5A 3GTLA 5FTJA 4KODA 1TWAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KDI A;  2B63 A;  1CR5 A;  5C1B A;  1H5N A;  3H0G A;  1K83 A;  1Q16 A;  1WLF A;  3HU3 A;  1R7R A;  4AZD A;  4CRZ A;  3IR6 A;  3GTK A;  2JA6 A;  3GTP A;  1TWF A;  2VPX A;  5GLF A;  1FDI A;  2KI8 A;  2PJH B;  3ML1 A;  2V3V A;  4AOK B;  3GTG A;  1H0H A;  5T5M D;  1TWG A;  5DYG A;  1Y4Z A;  1WCM A;  2JIR A;  2VPY A;  2E2H A;  1I3Q A;  1R27 A;  1CZ4 A;  1SIW A;  3O5A A;  1AA6 A;  2VUM A;  2JIM A;  1E18 A;  3GTO A;  2WB1 A;  5FTL A;  1KQF A;  2NAP A;  1AW8 B;  5B6C A;  2IV2 X;  4C2M A;  4D7Z B;  1OGY A;  5FTM A;  1Y1W A;  2E7Z A;  1YLE A;  2JA7 A;  1PYQ A;  3CQZ A;  3PLX B;  4KLN A;  4QIW A;  2VPZ A;  5DYI A;  3HU1 A;  3QWZ A;  2Y0S A;  1UHD A;  3HKZ A;  4RV0 A;  2JIQ A;  1Y5I A;  1R9T A;  2DMR A;  1SFO A;  4DMR A;  3GTM A;  1EU1 A;  1DMR A;  1G8J A;  1E61 A;  1TWC A;  4KO8 A;  2EEO B;  5EPP A;  1Y1V A;  1QDN A;  4AYB A;  1PYU B;  1TMO A;  2YU9 A;  3HU2 A;  1CZ5 A;  1PQH A;  2VPW A;  4GA5 A;  2E2I A;  2JV2 A;  2R92 A;  3GTJ A;  1S3S A;  1E5V A;  2NVX A;  1E60 A;  1DMS A;  1G8K A;  3QQ7 A;  3GTQ A;  3IR7 A;  2JA5 A;  4CS0 A;  3DMR A;  5T5I D;  1KQG A;  3CF2 A;  2JIO A;  4GA6 A;  2NYA A;  3FKI A;  2PMZ A;  2C45 A;  5C18 A;  1ZC1 A;  1I50 A;  4AAY A;  2YUJ A;  3QQ8 A;  4CRY G;  1E32 A;  2JIP A;  1PQF A;  1PT1 A;  1VC3 B;  3TIW A;  2R7Z A;  1PT0 A;  1IW7 D;  1PPY A;  3TM7 B;  1UHE A;  4KDL A;  3QC8 A;  3OUG A;  1FDO A;  2R93 A;  2WAQ A;  5FTK A;  4AON B;  1QCS A;  2NVY A;  1PQE A;  5FTN A;  2V45 A;  1TWH A;  3IR5 A;  3GTL A;  5FTJ A;  4KOD A;  1TWA A; 
#chains in the Genus database with same CATH topology
 4KDI A;  2B63 A;  1CR5 A;  1HD5 A;  2LW6 A;  5C1B A;  1H5N A;  3H0G A;  3SUK A;  1K83 A;  1Q16 A;  4AS1 A;  1WLF A;  3HU3 A;  1R7R A;  4AZD A;  4CRZ A;  3IR6 A;  3GTK A;  3FPU A;  5CD1 A;  2MM0 A;  3SUM A;  2JA6 A;  3GTP A;  4JP7 A;  1TWF A;  2VPX A;  5GLF A;  3LHD A;  1YNN D;  3ZJU A;  2PJJ A;  1FDI A;  2G5D A;  2KI8 A;  2PJH B;  2V3V A;  3ML1 A;  4JCW A;  4AOK B;  3GTG A;  1H0H A;  2QQS A;  5T5M D;  4ARI A;  4FG4 A;  1TWG A;  5DYG A;  1Y4Z A;  1N10 A;  1O54 A;  1WCM A;  2JIR A;  3BQB A;  2VPY A;  2CW0 D;  2E2H A;  1I3Q A;  1R27 A;  4NOH A;  3X2N A;  4ZM7 A;  2A69 D;  1CZ4 A;  1SIW A;  3O5A A;  1AA6 A;  2VUM A;  2JIM A;  3CZB A;  1E18 A;  3ZJV A;  2AE0 X;  3X2P A;  1YNJ D;  2BE5 D;  2WB1 A;  5GLY A;  3X2K A;  1ZYR D;  4FG2 A;  3GTO A;  4L48 A;  2GAE A;  5FTL A;  5D6Y A;  1KQF A;  2NAP A;  1AW8 B;  5B6C A;  1WC2 A;  2IV2 X;  4C2M A;  4D7Z B;  4JP6 A;  1OGY A;  5FTM A;  1Y1W A;  2E7Z A;  1YLE A;  4CQN A;  2JA7 A;  1PYQ A;  3CQZ A;  3PLX B;  4KLN A;  4QIW A;  2VPZ A;  2PNW A;  5DYI A;  4FIB A;  2GFA A;  3HU1 A;  3QWZ A;  2Y0S A;  1OA9 A;  1UHD A;  3HKZ A;  2JIQ A;  1OA7 A;  1Y5I A;  2DMR A;  4RV0 A;  1R9T A;  1SFO A;  4DMR A;  2Q1D X;  3MB5 A;  3FPR A;  3GTM A;  1EU1 A;  2QQR A;  1DMR A;  3ZGZ A;  2A6E D;  5D6W A;  1G8J A;  1E61 A;  1TWC A;  4KO8 A;  4AQ7 A;  2EEO B;  2PWY A;  5EPP A;  1Y1V A;  1QDN A;  2Q18 X;  4AYB A;  5ERG B;  1PYU B;  1TMO A;  2YU9 A;  3HU2 A;  1CZ5 A;  1PQH A;  2VPW A;  1SMY D;  2B25 A;  4GA5 A;  2E2I A;  3X2I A;  1L8F A;  2JV2 A;  3X2L A;  3GTJ A;  1S3S A;  1E5V A;  2R92 A;  4ARC A;  2O5J D;  2NVX A;  1E60 A;  2BH0 A;  1DMS A;  1G8K A;  3LGA A;  3QQ7 A;  3GTQ A;  3IR7 A;  2JA5 A;  4CS0 A;  3DMR A;  5CCX A;  2XDP A;  5D6X A;  2G6G A;  5T5I D;  1KQG A;  3CF2 A;  2JIO A;  2Q1A X;  5EQJ B;  4GA6 A;  2NYA A;  3D30 A;  3X2H A;  3FKI A;  2PMZ A;  2A68 D;  2KY9 A;  4FER A;  2C45 A;  5C18 A;  1ZC1 A;  1I50 A;  4AAY A;  2YUJ A;  2Q19 X;  3M3G A;  3QQ8 A;  2ENG A;  4FFT A;  5GLX A;  2HCZ X;  1E32 A;  3X2G A;  3X2J A;  2JIP A;  4CRY G;  3ZJT A;  1PQF A;  5CCB A;  2PI8 A;  2KQA A;  4AVR A;  1PT1 A;  4JJO A;  1VC3 B;  2A6H D;  3SUJ A;  2MM2 A;  3TIW A;  4ENG A;  3X2M A;  2R7Z A;  1PT0 A;  1IW7 D;  1BW4 A;  1I9G A;  4UC4 A;  1PPY A;  3TM7 B;  1UHE A;  4KDL A;  3QC8 A;  5GM9 A;  3FPT A;  3SUL A;  3OUG A;  1FDO A;  2R93 A;  2WAQ A;  5FTK A;  3X2O A;  4AON B;  1BW3 A;  2YVL A;  1QCS A;  2NVY A;  1PQE A;  2Q1C X;  4JS7 A;  2GF7 A;  3ENG A;  5FTN A;  2PIC A;  2V45 A;  1TWH A;  3IR5 A;  3GTL A;  5FTJ A;  4KOD A;  5H4U A;  1TWA A; 
#chains in the Genus database with same CATH homology
 4KDI A;  2B63 A;  1CR5 A;  2LW6 A;  5C1B A;  1H5N A;  3H0G A;  1K83 A;  1Q16 A;  4AS1 A;  1WLF A;  3HU3 A;  1R7R A;  4AZD A;  4CRZ A;  3IR6 A;  3GTK A;  5CD1 A;  2MM0 A;  2JA6 A;  3GTP A;  3ZJU A;  1TWF A;  2VPX A;  5GLF A;  3LHD A;  1YNN D;  2PJJ A;  1FDI A;  2G5D A;  2KI8 A;  2PJH B;  2V3V A;  3ML1 A;  4AOK B;  3GTG A;  1H0H A;  2QQS A;  5T5M D;  4ARI A;  1TWG A;  5DYG A;  1Y4Z A;  1WCM A;  2JIR A;  3BQB A;  2VPY A;  2CW0 D;  2E2H A;  1I3Q A;  1R27 A;  4NOH A;  2A69 D;  1CZ4 A;  1SIW A;  3O5A A;  1AA6 A;  2VUM A;  2JIM A;  3CZB A;  1E18 A;  3ZJV A;  2AE0 X;  3GTO A;  1YNJ D;  2BE5 D;  2WB1 A;  1ZYR D;  2GAE A;  5FTL A;  5D6Y A;  1KQF A;  2NAP A;  1AW8 B;  5B6C A;  2IV2 X;  4C2M A;  4D7Z B;  1OGY A;  5FTM A;  1Y1W A;  2E7Z A;  1YLE A;  4CQN A;  2JA7 A;  1PYQ A;  3CQZ A;  3PLX B;  4KLN A;  4QIW A;  2VPZ A;  2PNW A;  5DYI A;  4FIB A;  2GFA A;  3HU1 A;  3QWZ A;  2Y0S A;  1UHD A;  3HKZ A;  4RV0 A;  2JIQ A;  1Y5I A;  1R9T A;  2DMR A;  1SFO A;  1O54 A;  2Q1D X;  4DMR A;  3FPU A;  3MB5 A;  3FPR A;  3GTM A;  1EU1 A;  2QQR A;  1DMR A;  3ZGZ A;  2A6E D;  5D6W A;  1G8J A;  1E61 A;  1TWC A;  4KO8 A;  4AQ7 A;  2EEO B;  2PWY A;  5EPP A;  1Y1V A;  1QDN A;  2Q18 X;  4AYB A;  5ERG B;  1PYU B;  1TMO A;  2YU9 A;  3HU2 A;  1CZ5 A;  1PQH A;  2VPW A;  1SMY D;  2B25 A;  4GA5 A;  2E2I A;  2JV2 A;  4ARC A;  2R92 A;  3GTJ A;  1S3S A;  1E5V A;  2O5J D;  2NVX A;  1E60 A;  1DMS A;  1G8K A;  3LGA A;  3QQ7 A;  3GTQ A;  3IR7 A;  2JA5 A;  4CS0 A;  3DMR A;  5CCX A;  2XDP A;  5D6X A;  2G6G A;  5T5I D;  1KQG A;  3CF2 A;  2JIO A;  2Q1A X;  5EQJ B;  4GA6 A;  2NYA A;  2KY9 A;  3FKI A;  2PMZ A;  2A68 D;  2C45 A;  5C18 A;  1ZC1 A;  1I50 A;  4AAY A;  2YUJ A;  2Q19 X;  3QQ8 A;  4CRY G;  1E32 A;  2JIP A;  3ZJT A;  1PQF A;  5CCB A;  2PI8 A;  1PT1 A;  1VC3 B;  2A6H D;  2MM2 A;  3TIW A;  2R7Z A;  1PT0 A;  1IW7 D;  4UC4 A;  1I9G A;  1PPY A;  3TM7 B;  1UHE A;  4KDL A;  3QC8 A;  3FPT A;  3OUG A;  1FDO A;  2R93 A;  2WAQ A;  5FTK A;  4AON B;  2YVL A;  1QCS A;  2NVY A;  1PQE A;  2Q1C X;  2GF7 A;  5FTN A;  2PIC A;  2V45 A;  1TWH A;  3IR5 A;  3GTL A;  5FTJ A;  4KOD A;  1TWA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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