4KDIA

Crystal structure of p97/vcp n in complex with otu1 ubxl
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
165
structure length
157
Chain Sequence
NRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/hydrolase
source organism Homo sapiens
publication title Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
pubmed doi rcsb
molecule keywords Transitional endoplasmic reticulum ATPase
total genus 46
structure length 157
sequence length 165
chains with identical sequence B
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4kdiA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4kdiA02
1E32A 1UHEA 4GA5A 2B63A 1FDOA 1DMSA 5C1BA 2R93A 1PQEA 5FTLA 2JIQA 2JA5A 4CRYG 2PMZA 5FTNA 5GLFA 1R27A 1DMRA 3HU1A 3ML1A 4KODA 5DYIA 2PJHB 1K83A 4QIWA 2VUMA 1E18A 3GTKA 3QC8A 5FTMA 5FTKA 4KDLA 2R92A 1TWHA 4KO8A 3HU2A 4RV0A 1CZ4A 2JIPA 4AOKB 2C45A 4AONB 3H0GA 3GTMA 1ZC1A 2NVXA 5B6CA 2NYAA 2NAPA 2JIMA 3TM7B 1R9TA 3TIWA 3DMRA 5DYGA 1OGYA 2EEOB 2JIRA 3GTJA 1I3QA 2YU9A 2JA7A 1Y1VA 1Y5IA 3CQZA 1Q16A 4CS0A 1TWCA 1PQFA 1S3SA 1TWAA 4AZDA 1QDNA 3QQ8A 5T5MD 2WAQA 1WCMA 1WLFA 2VPXA 5C18A 1VC3B 2JA6A 2JV2A 3FKIA 1YLEA 4KDIA 1I50A 2E2IA 1E60A 1PT0A 1PYQA 2IV2X 1SIWA 4D7ZB 1SFOA 2VPWA 2R7ZA 1TWGA 2WB1A 3GTOA 3QWZA 3IR5A 1R7RA 4AAYA 2E7ZA 1E61A 1PQHA 1PPYA 3GTPA 2V45A 2VPYA 1G8JA 2NVYA 3OUGA 3IR7A 4KLNA 1PT1A 1CR5A 1QCSA 4CRZA 4DMRA 1AW8B 2Y0SA 2KI8A 3GTQA 1KQGA 2E2HA 2JIOA 2VPZA 1FDIA 4GA6A 5T5ID 1Y1WA 1H5NA 1IW7D 4C2MA 2DMRA 1UHDA 3QQ7A 3HKZA 1E5VA 3O5AA 3CF2A 4AYBA 1EU1A 1TWFA 3GTGA 1Y4ZA 1KQFA 3GTLA 5FTJA 3HU3A 1TMOA 2V3VA 1H0HA 3PLXB 5EPPA 3IR6A 2YUJA 1G8KA 1PYUB 1AA6A 1CZ5A
chains in the Genus database with same CATH superfamily
1E32A 1UHEA 2Q1AX 4GA5A 2B63A 2Q1CX 1FDOA 3ZJUA 5GM9A 1DMSA 2Q19X 5C1BA 2R93A 1PQEA 5FTLA 2JIQA 4ARCA 2JA5A 3X2HA 2XDPA 4CRYG 2PMZA 1OA9A 5FTNA 1YNJD 5GLFA 2QQRA 1R27A 1DMRA 3HU1A 3ML1A 4KODA 5DYIA 2PJHB 3LGAA 3X2NA 1K83A 4FERA 4QIWA 2VUMA 1E18A 3GTKA 3QC8A 5CCXA 3SUKA 5FTMA 3SUMA 1O54A 2G6GA 5FTKA 4KDLA 2R92A 1TWHA 4ZM7A 4KO8A 3HU2A 4RV0A 1CZ4A 2JIPA 3FPRA 4AOKB 4AQ7A 2C45A 4JCWA 4AONB 3H0GA 3GTMA 5D6XA 1ZC1A 2NVXA 5B6CA 2GF7A 4AS1A 5GLXA 2NYAA 2NAPA 2JIMA 4AVRA 2G5DA 1I9GA 2A69D 4ARIA 4FG4A 5D6YA 3X2IA 3TM7B 1R9TA 3BQBA 1WC2A 3TIWA 3SUJA 2GAEA 3DMRA 1OGYA 5DYGA 2AE0X 2EEOB 2JIRA 3GTJA 2KQAA 1I3QA 2YU9A 4FIBA 2JA7A 3ZJVA 1Y1VA 4FG2A 4JP6A 3X2GA 1Y5IA 3X2PA 3CQZA 4ENGA 1Q16A 4CS0A 1HD5A 1TWCA 4FFTA 1PQFA 2MM0A 2HCZX 1S3SA 2PJJA 1TWAA 4AZDA 1QDNA 3ENGA 3QQ8A 5T5MD 2LW6A 2WAQA 1WCMA 3FPUA 1WLFA 2VPXA 3X2KA 1VC3B 5C18A 3X2JA 2JA6A 3FKIA 5H4UA 1YLEA 2JV2A 4KDIA 3FPTA 1I50A 2E2IA 1E60A 1PT0A 1PYQA 2IV2X 1SIWA 4D7ZB 1SFOA 2A6HD 2VPWA 2R7ZA 5D6WA 1TWGA 2WB1A 3GTOA 1YNND 2CW0D 3QWZA 3X2LA 3IR5A 1R7RA 2PICA 2E7ZA 4AAYA 1E61A 4NOHA 1PQHA 1PPYA 3GTPA 2V45A 2VPYA 1G8JA 1L8FA 2NVYA 3CZBA 3OUGA 4JP7A 3SULA 2O5JD 2B25A 2GFAA 3IR7A 2BE5D 4KLNA 5CCBA 2A6ED 2PI8A 5CD1A 1PT1A 3MB5A 1CR5A 1QCSA 2A68D 1N10A 4CRZA 2Q18X 3LHDA 4DMRA 1AW8B 2Y0SA 2KI8A 3X2OA 1KQGA 3GTQA 2PWYA 3ZGZA 1ZYRD 2E2HA 2JIOA 2VPZA 1FDIA 4GA6A 5T5ID 1Y1WA 1H5NA 1IW7D 3X2MA 4C2MA 2DMRA 1UHDA 3D30A 3QQ7A 2ENGA 3HKZA 4JS7A 1BW3A 1E5VA 3O5AA 2PNWA 4CQNA 3CF2A 4AYBA 1EU1A 1TWFA 4L48A 3GTGA 2BH0A 1Y4ZA 1KQFA 3GTLA 2YVLA 5FTJA 3HU3A 4JJOA 4UC4A 1TMOA 2V3VA 1SMYD 1H0HA 3M3GA 5GLYA 2KY9A 2MM2A 5ERGB 1OA7A 3PLXB 5EPPA 1BW4A 3ZJTA 3IR6A 2YUJA 1G8KA 2QQSA 1PYUB 1AA6A 5EQJB 1CZ5A 2Q1DX
chains in the Genus database with same CATH topology
1E32A 1UHEA 2Q1AX 4GA5A 2B63A 2Q1CX 1FDOA 3ZJUA 1DMSA 2Q19X 5C1BA 2R93A 1PQEA 5FTLA 2JIQA 4ARCA 2JA5A 2XDPA 4CRYG 2PMZA 5FTNA 1YNJD 5GLFA 2QQRA 1R27A 1DMRA 3HU1A 3ML1A 4KODA 5DYIA 2PJHB 3LGAA 1K83A 4QIWA 2VUMA 1E18A 3GTKA 3QC8A 5CCXA 5FTMA 1O54A 2G6GA 5FTKA 4KDLA 2R92A 1TWHA 4KO8A 3HU2A 4RV0A 1CZ4A 2JIPA 3FPRA 4AOKB 4AQ7A 2C45A 4AONB 3H0GA 3GTMA 5D6XA 1ZC1A 2NVXA 5B6CA 2GF7A 4AS1A 2NYAA 2NAPA 2JIMA 2G5DA 1I9GA 2A69D 4ARIA 5D6YA 3TM7B 1R9TA 3BQBA 3TIWA 2GAEA 3DMRA 1OGYA 5DYGA 2AE0X 2EEOB 2JIRA 3GTJA 1I3QA 2YU9A 4FIBA 2JA7A 3ZJVA 1Y1VA 1Y5IA 3CQZA 1Q16A 4CS0A 1TWCA 1PQFA 2MM0A 1S3SA 2PJJA 1TWAA 4AZDA 1QDNA 2LW6A 3QQ8A 5T5MD 2WAQA 1WCMA 3FPUA 1WLFA 2VPXA 5C18A 1VC3B 2JA6A 2JV2A 3FKIA 1YLEA 4KDIA 3FPTA 1I50A 2E2IA 1E60A 1PT0A 1PYQA 2IV2X 1SIWA 4D7ZB 1SFOA 2A6HD 2VPWA 2R7ZA 5D6WA 1TWGA 2WB1A 3GTOA 1YNND 2CW0D 3QWZA 3IR5A 1R7RA 2PICA 2E7ZA 4AAYA 1E61A 4NOHA 1PQHA 1PPYA 3GTPA 2V45A 2VPYA 1G8JA 2NVYA 3CZBA 3OUGA 2O5JD 2B25A 2GFAA 3IR7A 2BE5D 4KLNA 5CCBA 2A6ED 2PI8A 5CD1A 1PT1A 3MB5A 1CR5A 1QCSA 2A68D 4CRZA 2Q18X 3LHDA 4DMRA 1AW8B 2Y0SA 2KI8A 3GTQA 1KQGA 2PWYA 3ZGZA 1ZYRD 2E2HA 2JIOA 2VPZA 1FDIA 4GA6A 5T5ID 1Y1WA 1H5NA 1IW7D 4C2MA 2DMRA 1UHDA 3QQ7A 3HKZA 1E5VA 3O5AA 2PNWA 4CQNA 3CF2A 4AYBA 1EU1A 1TWFA 3GTGA 1Y4ZA 1KQFA 3GTLA 2YVLA 5FTJA 3HU3A 4UC4A 1TMOA 2V3VA 1SMYD 1H0HA 2KY9A 2MM2A 5ERGB 3PLXB 5EPPA 3ZJTA 3IR6A 2YUJA 1G8KA 2QQSA 1PYUB 1AA6A 5EQJB 1CZ5A 2Q1DX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E32 A;  1UHE A;  4GA5 A;  2B63 A;  1FDO A;  1DMS A;  5C1B A;  2R93 A;  1PQE A;  5FTL A;  2JIQ A;  2JA5 A;  4CRY G;  2PMZ A;  5FTN A;  5GLF A;  1R27 A;  1DMR A;  3HU1 A;  3ML1 A;  4KOD A;  5DYI A;  2PJH B;  1K83 A;  4QIW A;  2VUM A;  1E18 A;  3GTK A;  3QC8 A;  5FTM A;  5FTK A;  4KDL A;  2R92 A;  1TWH A;  4KO8 A;  3HU2 A;  4RV0 A;  1CZ4 A;  2JIP A;  4AOK B;  2C45 A;  4AON B;  3H0G A;  3GTM A;  1ZC1 A;  2NVX A;  5B6C A;  2NYA A;  2NAP A;  2JIM A;  3TM7 B;  1R9T A;  3TIW A;  3DMR A;  5DYG A;  1OGY A;  2EEO B;  2JIR A;  3GTJ A;  1I3Q A;  2YU9 A;  2JA7 A;  1Y1V A;  1Y5I A;  3CQZ A;  1Q16 A;  4CS0 A;  1TWC A;  1PQF A;  1S3S A;  1TWA A;  4AZD A;  1QDN A;  3QQ8 A;  5T5M D;  2WAQ A;  1WCM A;  1WLF A;  2VPX A;  5C18 A;  1VC3 B;  2JA6 A;  2JV2 A;  3FKI A;  1YLE A;  4KDI A;  1I50 A;  2E2I A;  1E60 A;  1PT0 A;  1PYQ A;  2IV2 X;  1SIW A;  4D7Z B;  1SFO A;  2VPW A;  2R7Z A;  1TWG A;  2WB1 A;  3GTO A;  3QWZ A;  3IR5 A;  1R7R A;  4AAY A;  2E7Z A;  1E61 A;  1PQH A;  1PPY A;  3GTP A;  2V45 A;  2VPY A;  1G8J A;  2NVY A;  3OUG A;  3IR7 A;  4KLN A;  1PT1 A;  1CR5 A;  1QCS A;  4CRZ A;  4DMR A;  1AW8 B;  2Y0S A;  2KI8 A;  3GTQ A;  1KQG A;  2E2H A;  2JIO A;  2VPZ A;  1FDI A;  4GA6 A;  5T5I D;  1Y1W A;  1H5N A;  1IW7 D;  4C2M A;  2DMR A;  1UHD A;  3QQ7 A;  3HKZ A;  1E5V A;  3O5A A;  3CF2 A;  4AYB A;  1EU1 A;  1TWF A;  3GTG A;  1Y4Z A;  1KQF A;  3GTL A;  5FTJ A;  3HU3 A;  1TMO A;  2V3V A;  1H0H A;  3PLX B;  5EPP A;  3IR6 A;  2YUJ A;  1G8K A;  1PYU B;  1AA6 A;  1CZ5 A; 
#chains in the Genus database with same CATH topology
 1E32 A;  1UHE A;  2Q1A X;  4GA5 A;  2B63 A;  2Q1C X;  1FDO A;  3ZJU A;  5GM9 A;  1DMS A;  2Q19 X;  5C1B A;  2R93 A;  1PQE A;  5FTL A;  2JIQ A;  4ARC A;  2JA5 A;  3X2H A;  2XDP A;  4CRY G;  2PMZ A;  1OA9 A;  5FTN A;  1YNJ D;  5GLF A;  2QQR A;  1R27 A;  1DMR A;  3HU1 A;  3ML1 A;  4KOD A;  5DYI A;  2PJH B;  3LGA A;  3X2N A;  1K83 A;  4FER A;  4QIW A;  2VUM A;  1E18 A;  3GTK A;  3QC8 A;  5CCX A;  3SUK A;  5FTM A;  3SUM A;  1O54 A;  2G6G A;  5FTK A;  4KDL A;  2R92 A;  1TWH A;  4ZM7 A;  4KO8 A;  3HU2 A;  4RV0 A;  1CZ4 A;  2JIP A;  3FPR A;  4AOK B;  4AQ7 A;  2C45 A;  4JCW A;  4AON B;  3H0G A;  3GTM A;  5D6X A;  1ZC1 A;  2NVX A;  5B6C A;  2GF7 A;  4AS1 A;  5GLX A;  2NYA A;  2NAP A;  2JIM A;  4AVR A;  2G5D A;  1I9G A;  2A69 D;  4ARI A;  4FG4 A;  5D6Y A;  3X2I A;  3TM7 B;  1R9T A;  3BQB A;  1WC2 A;  3TIW A;  3SUJ A;  2GAE A;  3DMR A;  1OGY A;  5DYG A;  2AE0 X;  2EEO B;  2JIR A;  3GTJ A;  2KQA A;  1I3Q A;  2YU9 A;  4FIB A;  2JA7 A;  3ZJV A;  1Y1V A;  4FG2 A;  4JP6 A;  3X2G A;  1Y5I A;  3X2P A;  3CQZ A;  4ENG A;  1Q16 A;  4CS0 A;  1HD5 A;  1TWC A;  4FFT A;  1PQF A;  2MM0 A;  2HCZ X;  1S3S A;  2PJJ A;  1TWA A;  4AZD A;  1QDN A;  3ENG A;  3QQ8 A;  5T5M D;  2LW6 A;  2WAQ A;  1WCM A;  3FPU A;  1WLF A;  2VPX A;  3X2K A;  1VC3 B;  5C18 A;  3X2J A;  2JA6 A;  3FKI A;  5H4U A;  1YLE A;  2JV2 A;  4KDI A;  3FPT A;  1I50 A;  2E2I A;  1E60 A;  1PT0 A;  1PYQ A;  2IV2 X;  1SIW A;  4D7Z B;  1SFO A;  2A6H D;  2VPW A;  2R7Z A;  5D6W A;  1TWG A;  2WB1 A;  3GTO A;  1YNN D;  2CW0 D;  3QWZ A;  3X2L A;  3IR5 A;  1R7R A;  2PIC A;  2E7Z A;  4AAY A;  1E61 A;  4NOH A;  1PQH A;  1PPY A;  3GTP A;  2V45 A;  2VPY A;  1G8J A;  1L8F A;  2NVY A;  3CZB A;  3OUG A;  4JP7 A;  3SUL A;  2O5J D;  2B25 A;  2GFA A;  3IR7 A;  2BE5 D;  4KLN A;  5CCB A;  2A6E D;  2PI8 A;  5CD1 A;  1PT1 A;  3MB5 A;  1CR5 A;  1QCS A;  2A68 D;  1N10 A;  4CRZ A;  2Q18 X;  3LHD A;  4DMR A;  1AW8 B;  2Y0S A;  2KI8 A;  3X2O A;  1KQG A;  3GTQ A;  2PWY A;  3ZGZ A;  1ZYR D;  2E2H A;  2JIO A;  2VPZ A;  1FDI A;  4GA6 A;  5T5I D;  1Y1W A;  1H5N A;  1IW7 D;  3X2M A;  4C2M A;  2DMR A;  1UHD A;  3D30 A;  3QQ7 A;  2ENG A;  3HKZ A;  4JS7 A;  1BW3 A;  1E5V A;  3O5A A;  2PNW A;  4CQN A;  3CF2 A;  4AYB A;  1EU1 A;  1TWF A;  4L48 A;  3GTG A;  2BH0 A;  1Y4Z A;  1KQF A;  3GTL A;  2YVL A;  5FTJ A;  3HU3 A;  4JJO A;  4UC4 A;  1TMO A;  2V3V A;  1SMY D;  1H0H A;  3M3G A;  5GLY A;  2KY9 A;  2MM2 A;  5ERG B;  1OA7 A;  3PLX B;  5EPP A;  1BW4 A;  3ZJT A;  3IR6 A;  2YUJ A;  1G8K A;  2QQS A;  1PYU B;  1AA6 A;  5EQJ B;  1CZ5 A;  2Q1D X; 
#chains in the Genus database with same CATH homology
 1E32 A;  1UHE A;  2Q1A X;  4GA5 A;  2B63 A;  2Q1C X;  1FDO A;  3ZJU A;  1DMS A;  2Q19 X;  5C1B A;  2R93 A;  1PQE A;  5FTL A;  2JIQ A;  4ARC A;  2JA5 A;  2XDP A;  4CRY G;  2PMZ A;  5FTN A;  1YNJ D;  5GLF A;  2QQR A;  1R27 A;  1DMR A;  3HU1 A;  3ML1 A;  4KOD A;  5DYI A;  2PJH B;  3LGA A;  1K83 A;  4QIW A;  2VUM A;  1E18 A;  3GTK A;  3QC8 A;  5CCX A;  5FTM A;  1O54 A;  2G6G A;  5FTK A;  4KDL A;  2R92 A;  1TWH A;  4KO8 A;  3HU2 A;  4RV0 A;  1CZ4 A;  2JIP A;  3FPR A;  4AOK B;  4AQ7 A;  2C45 A;  4AON B;  3H0G A;  3GTM A;  5D6X A;  1ZC1 A;  2NVX A;  5B6C A;  2GF7 A;  4AS1 A;  2NYA A;  2NAP A;  2JIM A;  2G5D A;  1I9G A;  2A69 D;  4ARI A;  5D6Y A;  3TM7 B;  1R9T A;  3BQB A;  3TIW A;  2GAE A;  3DMR A;  1OGY A;  5DYG A;  2AE0 X;  2EEO B;  2JIR A;  3GTJ A;  1I3Q A;  2YU9 A;  4FIB A;  2JA7 A;  3ZJV A;  1Y1V A;  1Y5I A;  3CQZ A;  1Q16 A;  4CS0 A;  1TWC A;  1PQF A;  2MM0 A;  1S3S A;  2PJJ A;  1TWA A;  4AZD A;  1QDN A;  2LW6 A;  3QQ8 A;  5T5M D;  2WAQ A;  1WCM A;  3FPU A;  1WLF A;  2VPX A;  5C18 A;  1VC3 B;  2JA6 A;  2JV2 A;  3FKI A;  1YLE A;  4KDI A;  3FPT A;  1I50 A;  2E2I A;  1E60 A;  1PT0 A;  1PYQ A;  2IV2 X;  1SIW A;  4D7Z B;  1SFO A;  2A6H D;  2VPW A;  2R7Z A;  5D6W A;  1TWG A;  2WB1 A;  3GTO A;  1YNN D;  2CW0 D;  3QWZ A;  3IR5 A;  1R7R A;  2PIC A;  2E7Z A;  4AAY A;  1E61 A;  4NOH A;  1PQH A;  1PPY A;  3GTP A;  2V45 A;  2VPY A;  1G8J A;  2NVY A;  3CZB A;  3OUG A;  2O5J D;  2B25 A;  2GFA A;  3IR7 A;  2BE5 D;  4KLN A;  5CCB A;  2A6E D;  2PI8 A;  5CD1 A;  1PT1 A;  3MB5 A;  1CR5 A;  1QCS A;  2A68 D;  4CRZ A;  2Q18 X;  3LHD A;  4DMR A;  1AW8 B;  2Y0S A;  2KI8 A;  3GTQ A;  1KQG A;  2PWY A;  3ZGZ A;  1ZYR D;  2E2H A;  2JIO A;  2VPZ A;  1FDI A;  4GA6 A;  5T5I D;  1Y1W A;  1H5N A;  1IW7 D;  4C2M A;  2DMR A;  1UHD A;  3QQ7 A;  3HKZ A;  1E5V A;  3O5A A;  2PNW A;  4CQN A;  3CF2 A;  4AYB A;  1EU1 A;  1TWF A;  3GTG A;  1Y4Z A;  1KQF A;  3GTL A;  2YVL A;  5FTJ A;  3HU3 A;  4UC4 A;  1TMO A;  2V3V A;  1SMY D;  1H0H A;  2KY9 A;  2MM2 A;  5ERG B;  3PLX B;  5EPP A;  3ZJT A;  3IR6 A;  2YUJ A;  1G8K A;  2QQS A;  1PYU B;  1AA6 A;  5EQJ B;  1CZ5 A;  2Q1D X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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