4KDIA

Crystal structure of p97/vcp n in complex with otu1 ubxl
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
165
structure length
157
Chain Sequence
b'NRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
pubmed doi rcsb
molecule keywords Transitional endoplasmic reticulum ATPase
source organism Homo sapiens
molecule tags Signaling protein/hydrolase
total genus 46
structure length 157
sequence length 165
chains with identical sequence B
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4kdiA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4kdiA02
4CRZA 2JA6A 2YUJA 2VPZA 1AW8B 1FDIA 2E7ZA 2PMZA 1PQEA 1TWCA 1SFOA 1E18A 5FTKA 1TWFA 3GTQA 3GTOA 1WLFA 1CZ5A 1PT0A 3GTMA 1Y1VA 1PQFA 4KODA 2JIRA 3DMRA 5FTLA 4AOKB 5T5ID 1EU1A 3HU1A 2PJHB 1Y4ZA 1I50A 4AAYA 1WCMA 2E2HA 2EEOB 1Q16A 4KLNA 4CRYG 2B63A 1PT1A 2JIMA 1E5VA 1PPYA 1AA6A 5FTJA 3CQZA 4GA5A 1R27A 4DMRA 2JA7A 1IW7D 2NVXA 3QC8A 4AZDA 2JIPA 3TIWA 3GTJA 5C1BA 1TMOA 3QQ8A 4QIWA 1CR5A 1KQGA 2VPXA 1E60A 3ML1A 5C18A 2V3VA 3FKIA 3HU3A 1CZ4A 1DMRA 2NAPA 4GA6A 1VC3B 2KI8A 1G8KA 4D7ZB 5FTNA 2R92A 1H0HA 4AYBA 1Y1WA 2JA5A 3TM7B 2R93A 2R7ZA 1E61A 5DYGA 3IR6A 1UHEA 2V45A 1I3QA 2C45A 1UHDA 2Y0SA 5B6CA 4KDLA 1G8JA 2E2IA 1OGYA 1E32A 2NVYA 3PLXB 1H5NA 3HKZA 3QQ7A 3QWZA 2YU9A 5EPPA 1K83A 1S3SA 2WAQA 3H0GA 1SIWA 3GTLA 1QDNA 3O5AA 5GLFA 1R9TA 1PQHA 3OUGA 1R7RA 3IR5A 5FTMA 1KQFA 3GTKA 2JV2A 1FDOA 3CF2A 1TWGA 4RV0A 3GTGA 1TWHA 4KO8A 3GTPA 1TWAA 1YLEA 4C2MA 1QCSA 5T5MD 2WB1A 1DMSA 2IV2X 1ZC1A 2VUMA 1Y5IA 2JIOA 2JIQA 2VPWA 1PYUB 2DMRA 3IR7A 5DYIA 4CS0A 3HU2A 4KDIA 1PYQA 2VPYA 4AONB 2NYAA
chains in the Genus database with same CATH superfamily
4CRZA 2JA6A 2YUJA 5CD1A 2VPZA 2ENGA 1AW8B 1FDIA 2E7ZA 1PQEA 1TWCA 2PMZA 3SUMA 4JS7A 1SFOA 2PWYA 3MB5A 1E18A 5FTKA 1TWFA 5GLXA 3GTQA 1WLFA 2PICA 3GTOA 1CZ5A 1PT0A 2Q1DX 3FPTA 3GTMA 1Y1VA 4NOHA 4FFTA 1PQFA 4KODA 2JIRA 3DMRA 5FTLA 4AOKB 5T5ID 1EU1A 3X2PA 2B25A 3X2GA 3HU1A 2PJHB 3X2KA 1Y4ZA 2A68D 4JCWA 4AAYA 4AVRA 1I50A 1WCMA 2E2HA 1BW4A 2EEOB 1Q16A 4KLNA 3SUKA 4CRYG 2B63A 1PT1A 2JIMA 1E5VA 1PPYA 2Q1AX 5D6XA 3CZBA 5FTJA 1AA6A 3X2IA 4ARIA 2KY9A 3CQZA 1L8FA 2MM0A 4GA5A 2Q19X 1R27A 4DMRA 2JA7A 1IW7D 2NVXA 2PI8A 3QC8A 2JIPA 3SUJA 3TIWA 4AZDA 1TMOA 4ENGA 5C1BA 3GTJA 3QQ8A 3FPUA 5ERGB 4QIWA 1SMYD 5GLYA 1CR5A 4JP7A 1KQGA 2VPXA 3M3GA 4JJOA 1E60A 3ML1A 5C18A 2V3VA 3FKIA 3HU3A 3X2OA 4AS1A 1CZ4A 1DMRA 5EQJB 3SULA 2QQRA 1HD5A 2NAPA 4GA6A 3X2MA 2YVLA 1VC3B 2KI8A 2PNWA 1G8KA 4D7ZB 5FTNA 3ZJUA 2R92A 1H0HA 3ZJVA 4AYBA 1Y1WA 2JA5A 2BE5D 2HCZX 2A69D 4FG2A 2GAEA 3TM7B 3X2JA 2R93A 2KQAA 1OA9A 2R7ZA 3LHDA 4L48A 3ZJTA 4ARCA 2PJJA 1E61A 5DYGA 2Q1CX 3LGAA 4ZM7A 1WC2A 2AE0X 3IR6A 2LW6A 3X2HA 1UHEA 2V45A 1I3QA 5CCBA 2C45A 1UHDA 1OA7A 1YNJD 1O54A 4AQ7A 1ZYRD 2Y0SA 5B6CA 4KDLA 2Q18X 5CCXA 1G8JA 2E2IA 2XDPA 4FIBA 3X2NA 1OGYA 1E32A 2G6GA 3FPRA 2NVYA 3PLXB 1H5NA 3HKZA 3QQ7A 3QWZA 2YU9A 2QQSA 5EPPA 1K83A 4CQNA 5GM9A 4FG4A 1S3SA 2WAQA 3H0GA 1SIWA 3GTLA 1YNND 1QDNA 3O5AA 2MM2A 1I9GA 2GFAA 5GLFA 1R9TA 1PQHA 3OUGA 5D6WA 2CW0D 1N10A 1R7RA 2BH0A 3IR5A 5FTMA 1KQFA 3GTKA 2JV2A 1FDOA 3CF2A 1TWGA 4RV0A 3GTGA 1TWHA 1BW3A 4KO8A 2A6ED 3GTPA 1TWAA 1YLEA 4FERA 4C2MA 1QCSA 5T5MD 2WB1A 1DMSA 3ENGA 2IV2X 2A6HD 1ZC1A 2VUMA 1Y5IA 2JIOA 2JIQA 2VPWA 1PYUB 2DMRA 3BQBA 5D6YA 3ZGZA 5H4UA 3IR7A 4UC4A 3X2LA 5DYIA 4CS0A 2O5JD 3HU2A 4JP6A 4KDIA 1PYQA 2GF7A 3D30A 2G5DA 2VPYA 4AONB 2NYAA
chains in the Genus database with same CATH topology
4CRZA 2JA6A 2YUJA 5CD1A 2VPZA 1AW8B 1FDIA 2E7ZA 2PMZA 1PQEA 1TWCA 2PWYA 1SFOA 3MB5A 1E18A 5FTKA 1TWFA 3GTQA 3GTOA 1WLFA 2PICA 1CZ5A 1PT0A 2Q1DX 3FPTA 3GTMA 1Y1VA 4NOHA 1PQFA 4KODA 2JIRA 3DMRA 5FTLA 4AOKB 5T5ID 1EU1A 2B25A 3HU1A 2PJHB 1Y4ZA 2A68D 4AAYA 1I50A 1WCMA 2E2HA 2EEOB 1Q16A 4KLNA 4CRYG 2B63A 1PT1A 2JIMA 1E5VA 1PPYA 2Q1AX 5D6XA 3CZBA 5FTJA 1AA6A 4ARIA 2KY9A 3CQZA 2MM0A 4GA5A 2Q19X 1R27A 4DMRA 2JA7A 1IW7D 2NVXA 2PI8A 3QC8A 2JIPA 3TIWA 4AZDA 5C1BA 1TMOA 3GTJA 3FPUA 5ERGB 3QQ8A 4QIWA 1SMYD 1CR5A 1KQGA 2VPXA 1E60A 3ML1A 5C18A 2V3VA 3FKIA 3HU3A 4AS1A 1CZ4A 1DMRA 5EQJB 2QQRA 2NAPA 2YVLA 4GA6A 1VC3B 2KI8A 2PNWA 1G8KA 4D7ZB 5FTNA 3ZJUA 2R92A 1H0HA 3ZJVA 4AYBA 1Y1WA 2JA5A 2BE5D 2A69D 2GAEA 3TM7B 2R93A 2R7ZA 3LHDA 3ZJTA 4ARCA 2PJJA 1E61A 5DYGA 2Q1CX 3LGAA 2AE0X 3IR6A 2LW6A 1UHEA 2V45A 1I3QA 5CCBA 2C45A 1UHDA 1YNJD 1O54A 4AQ7A 1ZYRD 2Y0SA 5B6CA 4KDLA 2Q18X 5CCXA 1G8JA 2E2IA 2XDPA 4FIBA 1OGYA 1E32A 2G6GA 3FPRA 2NVYA 3PLXB 1H5NA 3HKZA 3QQ7A 3QWZA 2YU9A 2QQSA 5EPPA 1K83A 4CQNA 1S3SA 2WAQA 3H0GA 1SIWA 3GTLA 1YNND 1QDNA 3O5AA 2MM2A 1I9GA 2GFAA 5GLFA 1R9TA 1PQHA 3OUGA 5D6WA 2CW0D 1R7RA 3IR5A 5FTMA 1KQFA 3GTKA 2JV2A 1FDOA 3CF2A 1TWGA 4RV0A 3GTGA 1TWHA 4KO8A 2A6ED 3GTPA 1TWAA 1YLEA 4C2MA 1QCSA 5T5MD 2WB1A 1DMSA 2IV2X 2A6HD 1ZC1A 2VUMA 1Y5IA 2JIOA 2JIQA 2VPWA 1PYUB 2DMRA 3BQBA 5D6YA 3ZGZA 3IR7A 4UC4A 5DYIA 4CS0A 2O5JD 3HU2A 4KDIA 1PYQA 2GF7A 2G5DA 2VPYA 4AONB 2NYAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CRZ A;  2JA6 A;  2YUJ A;  2VPZ A;  1AW8 B;  1FDI A;  2E7Z A;  2PMZ A;  1PQE A;  1TWC A;  1SFO A;  1E18 A;  5FTK A;  1TWF A;  3GTQ A;  3GTO A;  1WLF A;  1CZ5 A;  1PT0 A;  3GTM A;  1Y1V A;  1PQF A;  4KOD A;  2JIR A;  3DMR A;  5FTL A;  4AOK B;  5T5I D;  1EU1 A;  3HU1 A;  2PJH B;  1Y4Z A;  1I50 A;  4AAY A;  1WCM A;  2E2H A;  2EEO B;  1Q16 A;  4KLN A;  4CRY G;  2B63 A;  1PT1 A;  2JIM A;  1E5V A;  1PPY A;  1AA6 A;  5FTJ A;  3CQZ A;  4GA5 A;  1R27 A;  4DMR A;  2JA7 A;  1IW7 D;  2NVX A;  3QC8 A;  4AZD A;  2JIP A;  3TIW A;  3GTJ A;  5C1B A;  1TMO A;  3QQ8 A;  4QIW A;  1CR5 A;  1KQG A;  2VPX A;  1E60 A;  3ML1 A;  5C18 A;  2V3V A;  3FKI A;  3HU3 A;  1CZ4 A;  1DMR A;  2NAP A;  4GA6 A;  1VC3 B;  2KI8 A;  1G8K A;  4D7Z B;  5FTN A;  2R92 A;  1H0H A;  4AYB A;  1Y1W A;  2JA5 A;  3TM7 B;  2R93 A;  2R7Z A;  1E61 A;  5DYG A;  3IR6 A;  1UHE A;  2V45 A;  1I3Q A;  2C45 A;  1UHD A;  2Y0S A;  5B6C A;  4KDL A;  1G8J A;  2E2I A;  1OGY A;  1E32 A;  2NVY A;  3PLX B;  1H5N A;  3HKZ A;  3QQ7 A;  3QWZ A;  2YU9 A;  5EPP A;  1K83 A;  1S3S A;  2WAQ A;  3H0G A;  1SIW A;  3GTL A;  1QDN A;  3O5A A;  5GLF A;  1R9T A;  1PQH A;  3OUG A;  1R7R A;  3IR5 A;  5FTM A;  1KQF A;  3GTK A;  2JV2 A;  1FDO A;  3CF2 A;  1TWG A;  4RV0 A;  3GTG A;  1TWH A;  4KO8 A;  3GTP A;  1TWA A;  1YLE A;  4C2M A;  1QCS A;  5T5M D;  2WB1 A;  1DMS A;  2IV2 X;  1ZC1 A;  2VUM A;  1Y5I A;  2JIO A;  2JIQ A;  2VPW A;  1PYU B;  2DMR A;  3IR7 A;  5DYI A;  4CS0 A;  3HU2 A;  4KDI A;  1PYQ A;  2VPY A;  4AON B;  2NYA A; 
#chains in the Genus database with same CATH topology
 4CRZ A;  2JA6 A;  2YUJ A;  5CD1 A;  2VPZ A;  2ENG A;  1AW8 B;  1FDI A;  2E7Z A;  1PQE A;  1TWC A;  2PMZ A;  3SUM A;  4JS7 A;  1SFO A;  2PWY A;  3MB5 A;  1E18 A;  5FTK A;  1TWF A;  5GLX A;  3GTQ A;  1WLF A;  2PIC A;  3GTO A;  1CZ5 A;  1PT0 A;  2Q1D X;  3FPT A;  3GTM A;  1Y1V A;  4NOH A;  4FFT A;  1PQF A;  4KOD A;  2JIR A;  3DMR A;  5FTL A;  4AOK B;  5T5I D;  1EU1 A;  3X2P A;  2B25 A;  3X2G A;  3HU1 A;  2PJH B;  3X2K A;  1Y4Z A;  2A68 D;  4JCW A;  4AAY A;  4AVR A;  1I50 A;  1WCM A;  2E2H A;  1BW4 A;  2EEO B;  1Q16 A;  4KLN A;  3SUK A;  4CRY G;  2B63 A;  1PT1 A;  2JIM A;  1E5V A;  1PPY A;  2Q1A X;  5D6X A;  3CZB A;  5FTJ A;  1AA6 A;  3X2I A;  4ARI A;  2KY9 A;  3CQZ A;  1L8F A;  2MM0 A;  4GA5 A;  2Q19 X;  1R27 A;  4DMR A;  2JA7 A;  1IW7 D;  2NVX A;  2PI8 A;  3QC8 A;  2JIP A;  3SUJ A;  3TIW A;  4AZD A;  1TMO A;  4ENG A;  5C1B A;  3GTJ A;  3QQ8 A;  3FPU A;  5ERG B;  4QIW A;  1SMY D;  5GLY A;  1CR5 A;  4JP7 A;  1KQG A;  2VPX A;  3M3G A;  4JJO A;  1E60 A;  3ML1 A;  5C18 A;  2V3V A;  3FKI A;  3HU3 A;  3X2O A;  4AS1 A;  1CZ4 A;  1DMR A;  5EQJ B;  3SUL A;  2QQR A;  1HD5 A;  2NAP A;  4GA6 A;  3X2M A;  2YVL A;  1VC3 B;  2KI8 A;  2PNW A;  1G8K A;  4D7Z B;  5FTN A;  3ZJU A;  2R92 A;  1H0H A;  3ZJV A;  4AYB A;  1Y1W A;  2JA5 A;  2BE5 D;  2HCZ X;  2A69 D;  4FG2 A;  2GAE A;  3TM7 B;  3X2J A;  2R93 A;  2KQA A;  1OA9 A;  2R7Z A;  3LHD A;  4L48 A;  3ZJT A;  4ARC A;  2PJJ A;  1E61 A;  5DYG A;  2Q1C X;  3LGA A;  4ZM7 A;  1WC2 A;  2AE0 X;  3IR6 A;  2LW6 A;  3X2H A;  1UHE A;  2V45 A;  1I3Q A;  5CCB A;  2C45 A;  1UHD A;  1OA7 A;  1YNJ D;  1O54 A;  4AQ7 A;  1ZYR D;  2Y0S A;  5B6C A;  4KDL A;  2Q18 X;  5CCX A;  1G8J A;  2E2I A;  2XDP A;  4FIB A;  3X2N A;  1OGY A;  1E32 A;  2G6G A;  3FPR A;  2NVY A;  3PLX B;  1H5N A;  3HKZ A;  3QQ7 A;  3QWZ A;  2YU9 A;  2QQS A;  5EPP A;  1K83 A;  4CQN A;  5GM9 A;  4FG4 A;  1S3S A;  2WAQ A;  3H0G A;  1SIW A;  3GTL A;  1YNN D;  1QDN A;  3O5A A;  2MM2 A;  1I9G A;  2GFA A;  5GLF A;  1R9T A;  1PQH A;  3OUG A;  5D6W A;  2CW0 D;  1N10 A;  1R7R A;  2BH0 A;  3IR5 A;  5FTM A;  1KQF A;  3GTK A;  2JV2 A;  1FDO A;  3CF2 A;  1TWG A;  4RV0 A;  3GTG A;  1TWH A;  1BW3 A;  4KO8 A;  2A6E D;  3GTP A;  1TWA A;  1YLE A;  4FER A;  4C2M A;  1QCS A;  5T5M D;  2WB1 A;  1DMS A;  3ENG A;  2IV2 X;  2A6H D;  1ZC1 A;  2VUM A;  1Y5I A;  2JIO A;  2JIQ A;  2VPW A;  1PYU B;  2DMR A;  3BQB A;  5D6Y A;  3ZGZ A;  5H4U A;  3IR7 A;  4UC4 A;  3X2L A;  5DYI A;  4CS0 A;  2O5J D;  3HU2 A;  4JP6 A;  4KDI A;  1PYQ A;  2GF7 A;  3D30 A;  2G5D A;  2VPY A;  4AON B;  2NYA A; 
#chains in the Genus database with same CATH homology
 4CRZ A;  2JA6 A;  2YUJ A;  5CD1 A;  2VPZ A;  1AW8 B;  1FDI A;  2E7Z A;  2PMZ A;  1PQE A;  1TWC A;  2PWY A;  1SFO A;  3MB5 A;  1E18 A;  5FTK A;  1TWF A;  3GTQ A;  3GTO A;  1WLF A;  2PIC A;  1CZ5 A;  1PT0 A;  2Q1D X;  3FPT A;  3GTM A;  1Y1V A;  4NOH A;  1PQF A;  4KOD A;  2JIR A;  3DMR A;  5FTL A;  4AOK B;  5T5I D;  1EU1 A;  2B25 A;  3HU1 A;  2PJH B;  1Y4Z A;  2A68 D;  4AAY A;  1I50 A;  1WCM A;  2E2H A;  2EEO B;  1Q16 A;  4KLN A;  4CRY G;  2B63 A;  1PT1 A;  2JIM A;  1E5V A;  1PPY A;  2Q1A X;  5D6X A;  3CZB A;  5FTJ A;  1AA6 A;  4ARI A;  2KY9 A;  3CQZ A;  2MM0 A;  4GA5 A;  2Q19 X;  1R27 A;  4DMR A;  2JA7 A;  1IW7 D;  2NVX A;  2PI8 A;  3QC8 A;  2JIP A;  3TIW A;  4AZD A;  5C1B A;  1TMO A;  3GTJ A;  3FPU A;  5ERG B;  3QQ8 A;  4QIW A;  1SMY D;  1CR5 A;  1KQG A;  2VPX A;  1E60 A;  3ML1 A;  5C18 A;  2V3V A;  3FKI A;  3HU3 A;  4AS1 A;  1CZ4 A;  1DMR A;  5EQJ B;  2QQR A;  2NAP A;  2YVL A;  4GA6 A;  1VC3 B;  2KI8 A;  2PNW A;  1G8K A;  4D7Z B;  5FTN A;  3ZJU A;  2R92 A;  1H0H A;  3ZJV A;  4AYB A;  1Y1W A;  2JA5 A;  2BE5 D;  2A69 D;  2GAE A;  3TM7 B;  2R93 A;  2R7Z A;  3LHD A;  3ZJT A;  4ARC A;  2PJJ A;  1E61 A;  5DYG A;  2Q1C X;  3LGA A;  2AE0 X;  3IR6 A;  2LW6 A;  1UHE A;  2V45 A;  1I3Q A;  5CCB A;  2C45 A;  1UHD A;  1YNJ D;  1O54 A;  4AQ7 A;  1ZYR D;  2Y0S A;  5B6C A;  4KDL A;  2Q18 X;  5CCX A;  1G8J A;  2E2I A;  2XDP A;  4FIB A;  1OGY A;  1E32 A;  2G6G A;  3FPR A;  2NVY A;  3PLX B;  1H5N A;  3HKZ A;  3QQ7 A;  3QWZ A;  2YU9 A;  2QQS A;  5EPP A;  1K83 A;  4CQN A;  1S3S A;  2WAQ A;  3H0G A;  1SIW A;  3GTL A;  1YNN D;  1QDN A;  3O5A A;  2MM2 A;  1I9G A;  2GFA A;  5GLF A;  1R9T A;  1PQH A;  3OUG A;  5D6W A;  2CW0 D;  1R7R A;  3IR5 A;  5FTM A;  1KQF A;  3GTK A;  2JV2 A;  1FDO A;  3CF2 A;  1TWG A;  4RV0 A;  3GTG A;  1TWH A;  4KO8 A;  2A6E D;  3GTP A;  1TWA A;  1YLE A;  4C2M A;  1QCS A;  5T5M D;  2WB1 A;  1DMS A;  2IV2 X;  2A6H D;  1ZC1 A;  2VUM A;  1Y5I A;  2JIO A;  2JIQ A;  2VPW A;  1PYU B;  2DMR A;  3BQB A;  5D6Y A;  3ZGZ A;  3IR7 A;  4UC4 A;  5DYI A;  4CS0 A;  2O5J D;  3HU2 A;  4KDI A;  1PYQ A;  2GF7 A;  2G5D A;  2VPY A;  4AON B;  2NYA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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