3QQ8A

Crystal structure of p97-n in complex with faf1-ubx
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
177
structure length
177
Chain Sequence
b'DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Transitional endoplasmic reticulum ATPase
publication title Hierarchical Binding of Cofactors to the AAA ATPase p97.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Transport protein/apoptosis
total genus 47
structure length 177
sequence length 177
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qq8A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qq8A02
1R7RA 2NYAA 3CQZA 1IW7D 1QDNA 1Y1VA 3QWZA 4CRYG 1DMSA 1Y1WA 1S3SA 3QC8A 5B6CA 2EEOB 2VPYA 2KI8A 2JIPA 1Y4ZA 2Y0SA 5GLFA 1PPYA 1E5VA 1QCSA 3H0GA 2E2HA 2IV2X 2NAPA 4D7ZB 4AAYA 1G8KA 1DMRA 3QQ7A 1Y5IA 2JIOA 1UHDA 4CRZA 4RV0A 4KODA 1K83A 1TWCA 5DYGA 2JIQA 3IR5A 3GTMA 3HU3A 1H5NA 2JV2A 1PT0A 2JIMA 2VPXA 1TWFA 1PYQA 2V45A 3OUGA 2PMZA 1KQFA 1PYUB 4QIWA 2WAQA 5DYIA 2VPWA 4AZDA 3IR6A 2R92A 1E18A 5T5ID 1CZ4A 1CZ5A 2YU9A 2YUJA 1VC3B 4AOKB 1TWAA 2VUMA 2PJHB 1WCMA 1TWHA 4KO8A 3QQ8A 2JA7A 1Q16A 5FTJA 3TIWA 3GTPA 2JA5A 3HKZA 1PQHA 2NVYA 3HU1A 2WB1A 4KLNA 3GTLA 2R93A 2JIRA 5C1BA 1FDOA 1EU1A 1TWGA 3FKIA 1CR5A 3IR7A 2E2IA 1FDIA 1SIWA 4DMRA 1PQEA 2C45A 3PLXB 3CF2A 3GTOA 1SFOA 5FTKA 4AONB 1I3QA 5FTLA 1OGYA 1H0HA 1G8JA 1YLEA 5T5MD 1UHEA 1KQGA 1E60A 4KDLA 1ZC1A 2V3VA 2R7ZA 1R27A 3GTJA 2B63A 3GTQA 3GTKA 4KDIA 1R9TA 2JA6A 1PQFA 2DMRA 4AYBA 5FTNA 1AW8B 1PT1A 2E7ZA 5C18A 1E32A 4CS0A 3GTGA 1WLFA 2VPZA 3ML1A 3DMRA 3TM7B 4GA5A 5EPPA 1TMOA 3HU2A 2NVXA 1E61A 3O5AA 4GA6A 5FTMA 1I50A 1AA6A 4C2MA
chains in the Genus database with same CATH superfamily
1R7RA 2NYAA 2MM0A 3CQZA 3X2JA 1IW7D 2PNWA 1QDNA 1Y1VA 2PJJA 3QWZA 4CRYG 1DMSA 1Y1WA 1S3SA 1HD5A 3QC8A 5B6CA 2KY9A 3FPUA 2EEOB 2VPYA 2KI8A 3SUJA 2JIPA 4JJOA 1Y4ZA 2Y0SA 1ZYRD 5GLFA 1PPYA 1E5VA 1QCSA 3H0GA 2E2HA 4AS1A 2IV2X 1YNND 2NAPA 4D7ZB 4AAYA 3ZGZA 1G8KA 1DMRA 3QQ7A 1Y5IA 2A6HD 2JIOA 1UHDA 1SMYD 4NOHA 4CRZA 4ZM7A 2XDPA 3BQBA 4RV0A 3FPRA 3ZJVA 2GFAA 4KODA 3LHDA 1K83A 3X2HA 5CCBA 4ARIA 1TWCA 2YVLA 3X2OA 2LW6A 5D6XA 5DYGA 2JIQA 3IR5A 3GTMA 3HU3A 1H5NA 5ERGB 2PWYA 2JV2A 3MB5A 5EQJB 1PT0A 2JIMA 2VPXA 2AE0X 2Q1CX 5GLYA 1TWFA 3X2PA 4FFTA 1PYQA 2CW0D 3X2IA 2V45A 2MM2A 4CQNA 3CZBA 5D6YA 2BH0A 2BE5D 3OUGA 2PMZA 1KQFA 1OA7A 1PYUB 4FG2A 4QIWA 1YNJD 1O54A 2Q1DX 2WAQA 5DYIA 2QQSA 2VPWA 3SULA 4AZDA 4FG4A 3IR6A 5H4UA 3X2LA 3X2KA 2R92A 1E18A 3LGAA 5T5ID 1CZ4A 1CZ5A 2YU9A 4JP6A 2YUJA 1OA9A 1VC3B 2KQAA 3X2GA 4AOKB 2Q18X 3FPTA 1TWAA 2PI8A 2VUMA 1TWHA 1WCMA 2PJHB 4KO8A 2GF7A 3QQ8A 1WC2A 2G6GA 2JA7A 1Q16A 4AQ7A 5FTJA 2Q1AX 2A69D 3TIWA 3SUKA 3GTPA 2JA5A 3X2MA 2HCZX 3HKZA 4AVRA 1PQHA 1BW4A 1BW3A 2QQRA 2NVYA 5GM9A 3HU1A 5D6WA 2A6ED 2WB1A 4KLNA 3GTLA 2R93A 2JIRA 5C1BA 1FDOA 1I9GA 1EU1A 1TWGA 2Q19X 3FKIA 1CR5A 4L48A 3IR7A 2E2IA 1FDIA 5CD1A 1SIWA 4DMRA 1PQEA 2C45A 2PICA 3PLXB 3CF2A 3GTOA 1SFOA 5FTKA 4AONB 1I3QA 5GLXA 5CCXA 5FTLA 1OGYA 1H0HA 1G8JA 1YLEA 4FIBA 3ZJUA 5T5MD 1UHEA 1KQGA 1E60A 1ZC1A 4KDLA 2V3VA 4JS7A 2R7ZA 1R27A 2G5DA 3GTJA 2B63A 3GTQA 3GTKA 4KDIA 1R9TA 2JA6A 1PQFA 1L8FA 2DMRA 4JCWA 5FTNA 4AYBA 4FERA 1AW8B 1PT1A 2A68D 2E7ZA 5C18A 1E32A 4CS0A 2B25A 3GTGA 3SUMA 1WLFA 2O5JD 3D30A 2VPZA 3ML1A 3DMRA 3TM7B 4UC4A 4GA5A 4JP7A 3ENGA 4ARCA 5EPPA 1TMOA 3X2NA 3ZJTA 3HU2A 3M3GA 2NVXA 1E61A 3O5AA 4GA6A 4ENGA 5FTMA 1I50A 2ENGA 1AA6A 1N10A 2GAEA 4C2MA
chains in the Genus database with same CATH topology
1R7RA 2NYAA 2MM0A 3CQZA 1IW7D 2PNWA 1QDNA 1Y1VA 2PJJA 3QWZA 4CRYG 1DMSA 1Y1WA 1S3SA 3QC8A 5B6CA 3FPUA 2KY9A 2EEOB 2VPYA 2KI8A 2JIPA 1Y4ZA 2Y0SA 1ZYRD 5GLFA 1PPYA 1E5VA 1QCSA 3H0GA 2E2HA 4AS1A 2IV2X 1YNND 2NAPA 4D7ZB 4AAYA 3ZGZA 1G8KA 1DMRA 3QQ7A 1Y5IA 2A6HD 2JIOA 1UHDA 1SMYD 4NOHA 4CRZA 2XDPA 3BQBA 3FPRA 4RV0A 3ZJVA 2GFAA 4KODA 3LHDA 1K83A 5CCBA 4ARIA 1TWCA 2YVLA 2LW6A 5D6XA 5DYGA 2JIQA 3IR5A 3GTMA 3HU3A 1H5NA 5ERGB 2PWYA 2JV2A 3MB5A 5EQJB 1PT0A 2JIMA 2VPXA 2AE0X 2Q1CX 1TWFA 1PYQA 2CW0D 2V45A 2MM2A 4CQNA 3CZBA 5D6YA 2BE5D 3OUGA 2PMZA 1KQFA 1PYUB 4QIWA 1YNJD 1O54A 2Q1DX 2WAQA 5DYIA 2QQSA 2VPWA 4AZDA 3IR6A 2R92A 1E18A 5T5ID 1CZ4A 1CZ5A 2YU9A 2YUJA 1VC3B 4AOKB 2Q18X 3FPTA 1TWAA 2PI8A 2VUMA 1TWHA 1WCMA 2PJHB 4KO8A 2GF7A 3QQ8A 2JA7A 2G6GA 4AQ7A 1Q16A 5FTJA 2Q1AX 2A69D 3TIWA 3GTPA 2JA5A 3LGAA 2QQRA 3HKZA 5D6WA 1PQHA 2NVYA 3HU1A 2A6ED 2WB1A 4KLNA 3GTLA 2R93A 2JIRA 5C1BA 1FDOA 1I9GA 1EU1A 1TWGA 2Q19X 3FKIA 1CR5A 3IR7A 2E2IA 1FDIA 5CD1A 1SIWA 4DMRA 1PQEA 2C45A 2PICA 3PLXB 3CF2A 3GTOA 1SFOA 5FTKA 4AONB 1I3QA 5CCXA 5FTLA 1OGYA 1H0HA 1G8JA 1YLEA 4FIBA 3ZJUA 5T5MD 1UHEA 1KQGA 1E60A 1ZC1A 4KDLA 2V3VA 2R7ZA 1R27A 2G5DA 3GTJA 2B63A 3GTQA 3GTKA 4KDIA 1R9TA 2JA6A 1PQFA 2DMRA 4AYBA 5FTNA 1AW8B 1PT1A 2A68D 2E7ZA 5C18A 1E32A 4CS0A 2B25A 3GTGA 2O5JD 1WLFA 2VPZA 3ML1A 3DMRA 3TM7B 4UC4A 4GA5A 4ARCA 5EPPA 1TMOA 3ZJTA 3HU2A 2NVXA 1E61A 3O5AA 4GA6A 5FTMA 1I50A 1AA6A 2GAEA 4C2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R7R A;  2NYA A;  3CQZ A;  1IW7 D;  1QDN A;  1Y1V A;  3QWZ A;  4CRY G;  1DMS A;  1Y1W A;  1S3S A;  3QC8 A;  5B6C A;  2EEO B;  2VPY A;  2KI8 A;  2JIP A;  1Y4Z A;  2Y0S A;  5GLF A;  1PPY A;  1E5V A;  1QCS A;  3H0G A;  2E2H A;  2IV2 X;  2NAP A;  4D7Z B;  4AAY A;  1G8K A;  1DMR A;  3QQ7 A;  1Y5I A;  2JIO A;  1UHD A;  4CRZ A;  4RV0 A;  4KOD A;  1K83 A;  1TWC A;  5DYG A;  2JIQ A;  3IR5 A;  3GTM A;  3HU3 A;  1H5N A;  2JV2 A;  1PT0 A;  2JIM A;  2VPX A;  1TWF A;  1PYQ A;  2V45 A;  3OUG A;  2PMZ A;  1KQF A;  1PYU B;  4QIW A;  2WAQ A;  5DYI A;  2VPW A;  4AZD A;  3IR6 A;  2R92 A;  1E18 A;  5T5I D;  1CZ4 A;  1CZ5 A;  2YU9 A;  2YUJ A;  1VC3 B;  4AOK B;  1TWA A;  2VUM A;  2PJH B;  1WCM A;  1TWH A;  4KO8 A;  3QQ8 A;  2JA7 A;  1Q16 A;  5FTJ A;  3TIW A;  3GTP A;  2JA5 A;  3HKZ A;  1PQH A;  2NVY A;  3HU1 A;  2WB1 A;  4KLN A;  3GTL A;  2R93 A;  2JIR A;  5C1B A;  1FDO A;  1EU1 A;  1TWG A;  3FKI A;  1CR5 A;  3IR7 A;  2E2I A;  1FDI A;  1SIW A;  4DMR A;  1PQE A;  2C45 A;  3PLX B;  3CF2 A;  3GTO A;  1SFO A;  5FTK A;  4AON B;  1I3Q A;  5FTL A;  1OGY A;  1H0H A;  1G8J A;  1YLE A;  5T5M D;  1UHE A;  1KQG A;  1E60 A;  4KDL A;  1ZC1 A;  2V3V A;  2R7Z A;  1R27 A;  3GTJ A;  2B63 A;  3GTQ A;  3GTK A;  4KDI A;  1R9T A;  2JA6 A;  1PQF A;  2DMR A;  4AYB A;  5FTN A;  1AW8 B;  1PT1 A;  2E7Z A;  5C18 A;  1E32 A;  4CS0 A;  3GTG A;  1WLF A;  2VPZ A;  3ML1 A;  3DMR A;  3TM7 B;  4GA5 A;  5EPP A;  1TMO A;  3HU2 A;  2NVX A;  1E61 A;  3O5A A;  4GA6 A;  5FTM A;  1I50 A;  1AA6 A;  4C2M A; 
#chains in the Genus database with same CATH topology
 1R7R A;  2NYA A;  2MM0 A;  3CQZ A;  3X2J A;  1IW7 D;  2PNW A;  1QDN A;  1Y1V A;  2PJJ A;  3QWZ A;  4CRY G;  1DMS A;  1Y1W A;  1S3S A;  1HD5 A;  3QC8 A;  5B6C A;  2KY9 A;  3FPU A;  2EEO B;  2VPY A;  2KI8 A;  3SUJ A;  2JIP A;  4JJO A;  1Y4Z A;  2Y0S A;  1ZYR D;  5GLF A;  1PPY A;  1E5V A;  1QCS A;  3H0G A;  2E2H A;  4AS1 A;  2IV2 X;  1YNN D;  2NAP A;  4D7Z B;  4AAY A;  3ZGZ A;  1G8K A;  1DMR A;  3QQ7 A;  1Y5I A;  2A6H D;  2JIO A;  1UHD A;  1SMY D;  4NOH A;  4CRZ A;  4ZM7 A;  2XDP A;  3BQB A;  4RV0 A;  3FPR A;  3ZJV A;  2GFA A;  4KOD A;  3LHD A;  1K83 A;  3X2H A;  5CCB A;  4ARI A;  1TWC A;  2YVL A;  3X2O A;  2LW6 A;  5D6X A;  5DYG A;  2JIQ A;  3IR5 A;  3GTM A;  3HU3 A;  1H5N A;  5ERG B;  2PWY A;  2JV2 A;  3MB5 A;  5EQJ B;  1PT0 A;  2JIM A;  2VPX A;  2AE0 X;  2Q1C X;  5GLY A;  1TWF A;  3X2P A;  4FFT A;  1PYQ A;  2CW0 D;  3X2I A;  2V45 A;  2MM2 A;  4CQN A;  3CZB A;  5D6Y A;  2BH0 A;  2BE5 D;  3OUG A;  2PMZ A;  1KQF A;  1OA7 A;  1PYU B;  4FG2 A;  4QIW A;  1YNJ D;  1O54 A;  2Q1D X;  2WAQ A;  5DYI A;  2QQS A;  2VPW A;  3SUL A;  4AZD A;  4FG4 A;  3IR6 A;  5H4U A;  3X2L A;  3X2K A;  2R92 A;  1E18 A;  3LGA A;  5T5I D;  1CZ4 A;  1CZ5 A;  2YU9 A;  4JP6 A;  2YUJ A;  1OA9 A;  1VC3 B;  2KQA A;  3X2G A;  4AOK B;  2Q18 X;  3FPT A;  1TWA A;  2PI8 A;  2VUM A;  1TWH A;  1WCM A;  2PJH B;  4KO8 A;  2GF7 A;  3QQ8 A;  1WC2 A;  2G6G A;  2JA7 A;  1Q16 A;  4AQ7 A;  5FTJ A;  2Q1A X;  2A69 D;  3TIW A;  3SUK A;  3GTP A;  2JA5 A;  3X2M A;  2HCZ X;  3HKZ A;  4AVR A;  1PQH A;  1BW4 A;  1BW3 A;  2QQR A;  2NVY A;  5GM9 A;  3HU1 A;  5D6W A;  2A6E D;  2WB1 A;  4KLN A;  3GTL A;  2R93 A;  2JIR A;  5C1B A;  1FDO A;  1I9G A;  1EU1 A;  1TWG A;  2Q19 X;  3FKI A;  1CR5 A;  4L48 A;  3IR7 A;  2E2I A;  1FDI A;  5CD1 A;  1SIW A;  4DMR A;  1PQE A;  2C45 A;  2PIC A;  3PLX B;  3CF2 A;  3GTO A;  1SFO A;  5FTK A;  4AON B;  1I3Q A;  5GLX A;  5CCX A;  5FTL A;  1OGY A;  1H0H A;  1G8J A;  1YLE A;  4FIB A;  3ZJU A;  5T5M D;  1UHE A;  1KQG A;  1E60 A;  1ZC1 A;  4KDL A;  2V3V A;  4JS7 A;  2R7Z A;  1R27 A;  2G5D A;  3GTJ A;  2B63 A;  3GTQ A;  3GTK A;  4KDI A;  1R9T A;  2JA6 A;  1PQF A;  1L8F A;  2DMR A;  4JCW A;  5FTN A;  4AYB A;  4FER A;  1AW8 B;  1PT1 A;  2A68 D;  2E7Z A;  5C18 A;  1E32 A;  4CS0 A;  2B25 A;  3GTG A;  3SUM A;  1WLF A;  2O5J D;  3D30 A;  2VPZ A;  3ML1 A;  3DMR A;  3TM7 B;  4UC4 A;  4GA5 A;  4JP7 A;  3ENG A;  4ARC A;  5EPP A;  1TMO A;  3X2N A;  3ZJT A;  3HU2 A;  3M3G A;  2NVX A;  1E61 A;  3O5A A;  4GA6 A;  4ENG A;  5FTM A;  1I50 A;  2ENG A;  1AA6 A;  1N10 A;  2GAE A;  4C2M A; 
#chains in the Genus database with same CATH homology
 1R7R A;  2NYA A;  2MM0 A;  3CQZ A;  1IW7 D;  2PNW A;  1QDN A;  1Y1V A;  2PJJ A;  3QWZ A;  4CRY G;  1DMS A;  1Y1W A;  1S3S A;  3QC8 A;  5B6C A;  3FPU A;  2KY9 A;  2EEO B;  2VPY A;  2KI8 A;  2JIP A;  1Y4Z A;  2Y0S A;  1ZYR D;  5GLF A;  1PPY A;  1E5V A;  1QCS A;  3H0G A;  2E2H A;  4AS1 A;  2IV2 X;  1YNN D;  2NAP A;  4D7Z B;  4AAY A;  3ZGZ A;  1G8K A;  1DMR A;  3QQ7 A;  1Y5I A;  2A6H D;  2JIO A;  1UHD A;  1SMY D;  4NOH A;  4CRZ A;  2XDP A;  3BQB A;  3FPR A;  4RV0 A;  3ZJV A;  2GFA A;  4KOD A;  3LHD A;  1K83 A;  5CCB A;  4ARI A;  1TWC A;  2YVL A;  2LW6 A;  5D6X A;  5DYG A;  2JIQ A;  3IR5 A;  3GTM A;  3HU3 A;  1H5N A;  5ERG B;  2PWY A;  2JV2 A;  3MB5 A;  5EQJ B;  1PT0 A;  2JIM A;  2VPX A;  2AE0 X;  2Q1C X;  1TWF A;  1PYQ A;  2CW0 D;  2V45 A;  2MM2 A;  4CQN A;  3CZB A;  5D6Y A;  2BE5 D;  3OUG A;  2PMZ A;  1KQF A;  1PYU B;  4QIW A;  1YNJ D;  1O54 A;  2Q1D X;  2WAQ A;  5DYI A;  2QQS A;  2VPW A;  4AZD A;  3IR6 A;  2R92 A;  1E18 A;  5T5I D;  1CZ4 A;  1CZ5 A;  2YU9 A;  2YUJ A;  1VC3 B;  4AOK B;  2Q18 X;  3FPT A;  1TWA A;  2PI8 A;  2VUM A;  1TWH A;  1WCM A;  2PJH B;  4KO8 A;  2GF7 A;  3QQ8 A;  2JA7 A;  2G6G A;  4AQ7 A;  1Q16 A;  5FTJ A;  2Q1A X;  2A69 D;  3TIW A;  3GTP A;  2JA5 A;  3LGA A;  2QQR A;  3HKZ A;  5D6W A;  1PQH A;  2NVY A;  3HU1 A;  2A6E D;  2WB1 A;  4KLN A;  3GTL A;  2R93 A;  2JIR A;  5C1B A;  1FDO A;  1I9G A;  1EU1 A;  1TWG A;  2Q19 X;  3FKI A;  1CR5 A;  3IR7 A;  2E2I A;  1FDI A;  5CD1 A;  1SIW A;  4DMR A;  1PQE A;  2C45 A;  2PIC A;  3PLX B;  3CF2 A;  3GTO A;  1SFO A;  5FTK A;  4AON B;  1I3Q A;  5CCX A;  5FTL A;  1OGY A;  1H0H A;  1G8J A;  1YLE A;  4FIB A;  3ZJU A;  5T5M D;  1UHE A;  1KQG A;  1E60 A;  1ZC1 A;  4KDL A;  2V3V A;  2R7Z A;  1R27 A;  2G5D A;  3GTJ A;  2B63 A;  3GTQ A;  3GTK A;  4KDI A;  1R9T A;  2JA6 A;  1PQF A;  2DMR A;  4AYB A;  5FTN A;  1AW8 B;  1PT1 A;  2A68 D;  2E7Z A;  5C18 A;  1E32 A;  4CS0 A;  2B25 A;  3GTG A;  2O5J D;  1WLF A;  2VPZ A;  3ML1 A;  3DMR A;  3TM7 B;  4UC4 A;  4GA5 A;  4ARC A;  5EPP A;  1TMO A;  3ZJT A;  3HU2 A;  2NVX A;  1E61 A;  3O5A A;  4GA6 A;  5FTM A;  1I50 A;  1AA6 A;  2GAE A;  4C2M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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