3QQ8A

Crystal structure of p97-n in complex with faf1-ubx
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
177
structure length
177
Chain Sequence
b'DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Transitional endoplasmic reticulum ATPase
molecule tags Transport protein/apoptosis
source organism Homo sapiens
publication title Hierarchical Binding of Cofactors to the AAA ATPase p97.
pubmed doi rcsb
total genus 47
structure length 177
sequence length 177
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qq8A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qq8A02
3IR6A 1PQEA 1Y5IA 1YLEA 1TWGA 1KQGA 1PYQA 2JIPA 2R92A 1FDIA 1PT0A 4AZDA 3HU2A 3QQ7A 2V45A 4RV0A 2JV2A 3ML1A 1E60A 1Y1VA 2VUMA 3GTLA 3GTPA 1R27A 1SIWA 1VC3B 1QCSA 4D7ZB 3HU1A 4C2MA 2VPYA 3DMRA 2WAQA 2JA6A 1FDOA 5B6CA 1OGYA 3TIWA 5T5MD 2JIOA 5FTNA 4CRZA 1PYUB 3GTOA 1Y1WA 4AONB 5FTKA 2DMRA 1DMSA 4KO8A 5DYGA 3TM7B 1KQFA 1DMRA 1UHEA 3PLXB 1TMOA 5GLFA 4CS0A 1IW7D 2PMZA 4GA5A 2YUJA 1AA6A 3OUGA 1PT1A 5EPPA 2R93A 2JIQA 4KDLA 5C18A 1E5VA 1E18A 2WB1A 3QWZA 2EEOB 2V3VA 1AW8B 3GTMA 1G8JA 4CRYG 1E61A 1R7RA 2B63A 3QQ8A 2VPWA 1E32A 3H0GA 1S3SA 5DYIA 3QC8A 3FKIA 2JA5A 3IR7A 2VPZA 3CQZA 1TWCA 1WLFA 3GTGA 1Y4ZA 3O5AA 4KODA 5FTJA 3GTQA 5C1BA 2VPXA 2NVYA 2NVXA 1TWFA 1I50A 1H0HA 1K83A 3HKZA 2Y0SA 3GTKA 5FTLA 1WCMA 2JIRA 4DMRA 2E7ZA 4GA6A 1H5NA 1PQHA 1TWAA 1PPYA 1QDNA 3IR5A 3GTJA 2IV2X 1ZC1A 1Q16A 3HU3A 4AOKB 1I3QA 2PJHB 4AAYA 2NAPA 1R9TA 2C45A 2NYAA 1CZ5A 2KI8A 3CF2A 2R7ZA 2E2HA 5FTMA 4KDIA 4QIWA 5T5ID 1SFOA 4AYBA 1EU1A 4KLNA 2E2IA 1TWHA 2JA7A 1CZ4A 1UHDA 1G8KA 1CR5A 2YU9A 1PQFA 2JIMA
chains in the Genus database with same CATH superfamily
3IR6A 1PQEA 4ARIA 1Y5IA 1YLEA 3ZGZA 1TWGA 1KQGA 1PYQA 2JIPA 2R92A 5D6YA 2XDPA 1FDIA 2O5JD 1PT0A 4AZDA 4ZM7A 2AE0X 3HU2A 3X2LA 3QQ7A 2V45A 4RV0A 2JV2A 3ML1A 1E60A 2GFAA 4AQ7A 2Q1CX 1Y1VA 3SUJA 2VUMA 3GTLA 3GTPA 2PWYA 1R27A 1SIWA 1VC3B 1QCSA 4D7ZB 2MM2A 3X2HA 3HU1A 2GAEA 4C2MA 2VPYA 2KQAA 3DMRA 2WAQA 2JA6A 2PICA 1FDOA 5ERGB 1ZYRD 2Q19X 5GM9A 5B6CA 1OGYA 2A68D 3TIWA 5T5MD 2JIOA 3M3GA 4NOHA 3X2IA 2LW6A 5FTNA 4CRZA 2KY9A 3D30A 5EQJB 1PYUB 5H4UA 4JP7A 3GTOA 3SULA 1Y1WA 5CCBA 4AONB 5FTKA 2DMRA 3X2OA 4AVRA 1DMSA 4KO8A 5DYGA 3TM7B 1KQFA 2Q18X 5D6XA 4FFTA 3FPTA 3LHDA 1DMRA 4ARCA 2MM0A 1UHEA 3PLXB 1TMOA 5GLFA 4CS0A 1OA9A 1IW7D 3ZJTA 1WC2A 4FIBA 3FPRA 2PMZA 4GA5A 4JP6A 2YUJA 1AA6A 4JJOA 4FG4A 2A69D 1O54A 3OUGA 1PT1A 5EPPA 2R93A 2JIQA 4KDLA 5C18A 2GF7A 3X2MA 2QQSA 3LGAA 1SMYD 1E5VA 1E18A 2WB1A 3QWZA 5D6WA 2EEOB 2BH0A 2V3VA 1AW8B 4FG2A 3GTMA 3SUMA 4ENGA 1G8JA 1YNND 4CRYG 1E61A 2Q1DX 2ENGA 1HD5A 1R7RA 2B63A 3QQ8A 3FPUA 2VPWA 1YNJD 2PI8A 1E32A 3H0GA 1S3SA 5DYIA 1BW3A 2YVLA 2A6HD 3QC8A 3FKIA 2JA5A 2B25A 3IR7A 5CCXA 2VPZA 3CQZA 4AS1A 1TWCA 1WLFA 3BQBA 3MB5A 3GTGA 3ZJVA 1Y4ZA 3ZJUA 2A6ED 3O5AA 4KODA 3SUKA 4FERA 5FTJA 3X2GA 5C1BA 3GTQA 2BE5D 4L48A 1L8FA 2VPXA 3CZBA 3X2KA 2NVYA 5GLYA 2NVXA 1TWFA 4JS7A 3X2JA 1H0HA 1I50A 2PJJA 3HKZA 2Y0SA 1K83A 3GTKA 5FTLA 2CW0D 1WCMA 2JIRA 4DMRA 5GLXA 2E7ZA 4GA6A 1H5NA 1PQHA 1TWAA 1PPYA 1QDNA 3IR5A 3GTJA 1ZC1A 2IV2X 1Q16A 3HU3A 4AOKB 1I3QA 2PJHB 1I9GA 4UC4A 4AAYA 2NAPA 1R9TA 2C45A 2G5DA 2NYAA 4JCWA 3X2PA 1CZ5A 2KI8A 3CF2A 2R7ZA 2E2HA 5FTMA 4KDIA 4QIWA 5T5ID 2QQRA 2PNWA 1SFOA 4AYBA 1EU1A 1BW4A 4KLNA 2E2IA 2HCZX 1TWHA 1N10A 1CZ4A 2JA7A 2Q1AX 3ENGA 1UHDA 5CD1A 2G6GA 4CQNA 1G8KA 1CR5A 2YU9A 1OA7A 3X2NA 1PQFA 2JIMA
chains in the Genus database with same CATH topology
3IR6A 1PQEA 4ARIA 1Y5IA 1YLEA 3ZGZA 1TWGA 1KQGA 1PYQA 2JIPA 2R92A 5D6YA 2XDPA 1FDIA 2O5JD 1PT0A 4AZDA 2AE0X 3HU2A 3QQ7A 2V45A 4RV0A 2JV2A 3ML1A 1E60A 2GFAA 4AQ7A 2Q1CX 1Y1VA 2VUMA 2PWYA 3GTLA 3GTPA 1R27A 1SIWA 1VC3B 1QCSA 4D7ZB 2MM2A 3HU1A 2GAEA 4C2MA 2VPYA 3DMRA 2WAQA 2JA6A 2PICA 1FDOA 5ERGB 1ZYRD 2Q19X 5B6CA 1OGYA 2A68D 3TIWA 5T5MD 2JIOA 4NOHA 2LW6A 5FTNA 4CRZA 2KY9A 5EQJB 1PYUB 3GTOA 1Y1WA 5CCBA 4AONB 5FTKA 2DMRA 1DMSA 4KO8A 5DYGA 3TM7B 1KQFA 2Q18X 5D6XA 3FPTA 3LHDA 1DMRA 4ARCA 2MM0A 1UHEA 3PLXB 1TMOA 5GLFA 4CS0A 1IW7D 3ZJTA 4FIBA 3FPRA 2PMZA 4GA5A 2YUJA 1AA6A 2A69D 1O54A 3OUGA 1PT1A 5EPPA 2R93A 2JIQA 4KDLA 5C18A 2GF7A 2QQSA 3LGAA 1SMYD 1E5VA 1E18A 2WB1A 3QWZA 5D6WA 2EEOB 2V3VA 1AW8B 3GTMA 1G8JA 1YNND 4CRYG 1E61A 2Q1DX 1R7RA 2B63A 3QQ8A 3FPUA 2VPWA 1YNJD 2PI8A 1E32A 3H0GA 1S3SA 5DYIA 2YVLA 2A6HD 3QC8A 3FKIA 2JA5A 2B25A 3IR7A 5CCXA 2VPZA 3CQZA 4AS1A 1TWCA 1WLFA 3BQBA 3MB5A 3GTGA 3ZJVA 1Y4ZA 3ZJUA 2A6ED 3O5AA 4KODA 5FTJA 3GTQA 5C1BA 2BE5D 2VPXA 3CZBA 2NVYA 2NVXA 1TWFA 1I50A 1H0HA 1K83A 2PJJA 3HKZA 2Y0SA 3GTKA 5FTLA 2CW0D 1WCMA 2JIRA 4DMRA 2E7ZA 4GA6A 1H5NA 1PQHA 1TWAA 1PPYA 1QDNA 3IR5A 3GTJA 1ZC1A 2IV2X 1Q16A 3HU3A 4AOKB 1I3QA 2PJHB 1I9GA 4UC4A 4AAYA 2NAPA 1R9TA 2C45A 2G5DA 2NYAA 1CZ5A 2KI8A 3CF2A 2R7ZA 2E2HA 5FTMA 4KDIA 4QIWA 5T5ID 2QQRA 2PNWA 1SFOA 4AYBA 1EU1A 4KLNA 2E2IA 1TWHA 2JA7A 1CZ4A 2Q1AX 1UHDA 5CD1A 2G6GA 4CQNA 1G8KA 1CR5A 2YU9A 1PQFA 2JIMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IR6 A;  1PQE A;  1Y5I A;  1YLE A;  1TWG A;  1KQG A;  1PYQ A;  2JIP A;  2R92 A;  1FDI A;  1PT0 A;  4AZD A;  3HU2 A;  3QQ7 A;  2V45 A;  4RV0 A;  2JV2 A;  3ML1 A;  1E60 A;  1Y1V A;  2VUM A;  3GTL A;  3GTP A;  1R27 A;  1SIW A;  1VC3 B;  1QCS A;  4D7Z B;  3HU1 A;  4C2M A;  2VPY A;  3DMR A;  2WAQ A;  2JA6 A;  1FDO A;  5B6C A;  1OGY A;  3TIW A;  5T5M D;  2JIO A;  5FTN A;  4CRZ A;  1PYU B;  3GTO A;  1Y1W A;  4AON B;  5FTK A;  2DMR A;  1DMS A;  4KO8 A;  5DYG A;  3TM7 B;  1KQF A;  1DMR A;  1UHE A;  3PLX B;  1TMO A;  5GLF A;  4CS0 A;  1IW7 D;  2PMZ A;  4GA5 A;  2YUJ A;  1AA6 A;  3OUG A;  1PT1 A;  5EPP A;  2R93 A;  2JIQ A;  4KDL A;  5C18 A;  1E5V A;  1E18 A;  2WB1 A;  3QWZ A;  2EEO B;  2V3V A;  1AW8 B;  3GTM A;  1G8J A;  4CRY G;  1E61 A;  1R7R A;  2B63 A;  3QQ8 A;  2VPW A;  1E32 A;  3H0G A;  1S3S A;  5DYI A;  3QC8 A;  3FKI A;  2JA5 A;  3IR7 A;  2VPZ A;  3CQZ A;  1TWC A;  1WLF A;  3GTG A;  1Y4Z A;  3O5A A;  4KOD A;  5FTJ A;  3GTQ A;  5C1B A;  2VPX A;  2NVY A;  2NVX A;  1TWF A;  1I50 A;  1H0H A;  1K83 A;  3HKZ A;  2Y0S A;  3GTK A;  5FTL A;  1WCM A;  2JIR A;  4DMR A;  2E7Z A;  4GA6 A;  1H5N A;  1PQH A;  1TWA A;  1PPY A;  1QDN A;  3IR5 A;  3GTJ A;  2IV2 X;  1ZC1 A;  1Q16 A;  3HU3 A;  4AOK B;  1I3Q A;  2PJH B;  4AAY A;  2NAP A;  1R9T A;  2C45 A;  2NYA A;  1CZ5 A;  2KI8 A;  3CF2 A;  2R7Z A;  2E2H A;  5FTM A;  4KDI A;  4QIW A;  5T5I D;  1SFO A;  4AYB A;  1EU1 A;  4KLN A;  2E2I A;  1TWH A;  2JA7 A;  1CZ4 A;  1UHD A;  1G8K A;  1CR5 A;  2YU9 A;  1PQF A;  2JIM A; 
#chains in the Genus database with same CATH topology
 3IR6 A;  1PQE A;  4ARI A;  1Y5I A;  1YLE A;  3ZGZ A;  1TWG A;  1KQG A;  1PYQ A;  2JIP A;  2R92 A;  5D6Y A;  2XDP A;  1FDI A;  2O5J D;  1PT0 A;  4AZD A;  4ZM7 A;  2AE0 X;  3HU2 A;  3X2L A;  3QQ7 A;  2V45 A;  4RV0 A;  2JV2 A;  3ML1 A;  1E60 A;  2GFA A;  4AQ7 A;  2Q1C X;  1Y1V A;  3SUJ A;  2VUM A;  3GTL A;  3GTP A;  2PWY A;  1R27 A;  1SIW A;  1VC3 B;  1QCS A;  4D7Z B;  2MM2 A;  3X2H A;  3HU1 A;  2GAE A;  4C2M A;  2VPY A;  2KQA A;  3DMR A;  2WAQ A;  2JA6 A;  2PIC A;  1FDO A;  5ERG B;  1ZYR D;  2Q19 X;  5GM9 A;  5B6C A;  1OGY A;  2A68 D;  3TIW A;  5T5M D;  2JIO A;  3M3G A;  4NOH A;  3X2I A;  2LW6 A;  5FTN A;  4CRZ A;  2KY9 A;  3D30 A;  5EQJ B;  1PYU B;  5H4U A;  4JP7 A;  3GTO A;  3SUL A;  1Y1W A;  5CCB A;  4AON B;  5FTK A;  2DMR A;  3X2O A;  4AVR A;  1DMS A;  4KO8 A;  5DYG A;  3TM7 B;  1KQF A;  2Q18 X;  5D6X A;  4FFT A;  3FPT A;  3LHD A;  1DMR A;  4ARC A;  2MM0 A;  1UHE A;  3PLX B;  1TMO A;  5GLF A;  4CS0 A;  1OA9 A;  1IW7 D;  3ZJT A;  1WC2 A;  4FIB A;  3FPR A;  2PMZ A;  4GA5 A;  4JP6 A;  2YUJ A;  1AA6 A;  4JJO A;  4FG4 A;  2A69 D;  1O54 A;  3OUG A;  1PT1 A;  5EPP A;  2R93 A;  2JIQ A;  4KDL A;  5C18 A;  2GF7 A;  3X2M A;  2QQS A;  3LGA A;  1SMY D;  1E5V A;  1E18 A;  2WB1 A;  3QWZ A;  5D6W A;  2EEO B;  2BH0 A;  2V3V A;  1AW8 B;  4FG2 A;  3GTM A;  3SUM A;  4ENG A;  1G8J A;  1YNN D;  4CRY G;  1E61 A;  2Q1D X;  2ENG A;  1HD5 A;  1R7R A;  2B63 A;  3QQ8 A;  3FPU A;  2VPW A;  1YNJ D;  2PI8 A;  1E32 A;  3H0G A;  1S3S A;  5DYI A;  1BW3 A;  2YVL A;  2A6H D;  3QC8 A;  3FKI A;  2JA5 A;  2B25 A;  3IR7 A;  5CCX A;  2VPZ A;  3CQZ A;  4AS1 A;  1TWC A;  1WLF A;  3BQB A;  3MB5 A;  3GTG A;  3ZJV A;  1Y4Z A;  3ZJU A;  2A6E D;  3O5A A;  4KOD A;  3SUK A;  4FER A;  5FTJ A;  3X2G A;  5C1B A;  3GTQ A;  2BE5 D;  4L48 A;  1L8F A;  2VPX A;  3CZB A;  3X2K A;  2NVY A;  5GLY A;  2NVX A;  1TWF A;  4JS7 A;  3X2J A;  1H0H A;  1I50 A;  2PJJ A;  3HKZ A;  2Y0S A;  1K83 A;  3GTK A;  5FTL A;  2CW0 D;  1WCM A;  2JIR A;  4DMR A;  5GLX A;  2E7Z A;  4GA6 A;  1H5N A;  1PQH A;  1TWA A;  1PPY A;  1QDN A;  3IR5 A;  3GTJ A;  1ZC1 A;  2IV2 X;  1Q16 A;  3HU3 A;  4AOK B;  1I3Q A;  2PJH B;  1I9G A;  4UC4 A;  4AAY A;  2NAP A;  1R9T A;  2C45 A;  2G5D A;  2NYA A;  4JCW A;  3X2P A;  1CZ5 A;  2KI8 A;  3CF2 A;  2R7Z A;  2E2H A;  5FTM A;  4KDI A;  4QIW A;  5T5I D;  2QQR A;  2PNW A;  1SFO A;  4AYB A;  1EU1 A;  1BW4 A;  4KLN A;  2E2I A;  2HCZ X;  1TWH A;  1N10 A;  1CZ4 A;  2JA7 A;  2Q1A X;  3ENG A;  1UHD A;  5CD1 A;  2G6G A;  4CQN A;  1G8K A;  1CR5 A;  2YU9 A;  1OA7 A;  3X2N A;  1PQF A;  2JIM A; 
#chains in the Genus database with same CATH homology
 3IR6 A;  1PQE A;  4ARI A;  1Y5I A;  1YLE A;  3ZGZ A;  1TWG A;  1KQG A;  1PYQ A;  2JIP A;  2R92 A;  5D6Y A;  2XDP A;  1FDI A;  2O5J D;  1PT0 A;  4AZD A;  2AE0 X;  3HU2 A;  3QQ7 A;  2V45 A;  4RV0 A;  2JV2 A;  3ML1 A;  1E60 A;  2GFA A;  4AQ7 A;  2Q1C X;  1Y1V A;  2VUM A;  2PWY A;  3GTL A;  3GTP A;  1R27 A;  1SIW A;  1VC3 B;  1QCS A;  4D7Z B;  2MM2 A;  3HU1 A;  2GAE A;  4C2M A;  2VPY A;  3DMR A;  2WAQ A;  2JA6 A;  2PIC A;  1FDO A;  5ERG B;  1ZYR D;  2Q19 X;  5B6C A;  1OGY A;  2A68 D;  3TIW A;  5T5M D;  2JIO A;  4NOH A;  2LW6 A;  5FTN A;  4CRZ A;  2KY9 A;  5EQJ B;  1PYU B;  3GTO A;  1Y1W A;  5CCB A;  4AON B;  5FTK A;  2DMR A;  1DMS A;  4KO8 A;  5DYG A;  3TM7 B;  1KQF A;  2Q18 X;  5D6X A;  3FPT A;  3LHD A;  1DMR A;  4ARC A;  2MM0 A;  1UHE A;  3PLX B;  1TMO A;  5GLF A;  4CS0 A;  1IW7 D;  3ZJT A;  4FIB A;  3FPR A;  2PMZ A;  4GA5 A;  2YUJ A;  1AA6 A;  2A69 D;  1O54 A;  3OUG A;  1PT1 A;  5EPP A;  2R93 A;  2JIQ A;  4KDL A;  5C18 A;  2GF7 A;  2QQS A;  3LGA A;  1SMY D;  1E5V A;  1E18 A;  2WB1 A;  3QWZ A;  5D6W A;  2EEO B;  2V3V A;  1AW8 B;  3GTM A;  1G8J A;  1YNN D;  4CRY G;  1E61 A;  2Q1D X;  1R7R A;  2B63 A;  3QQ8 A;  3FPU A;  2VPW A;  1YNJ D;  2PI8 A;  1E32 A;  3H0G A;  1S3S A;  5DYI A;  2YVL A;  2A6H D;  3QC8 A;  3FKI A;  2JA5 A;  2B25 A;  3IR7 A;  5CCX A;  2VPZ A;  3CQZ A;  4AS1 A;  1TWC A;  1WLF A;  3BQB A;  3MB5 A;  3GTG A;  3ZJV A;  1Y4Z A;  3ZJU A;  2A6E D;  3O5A A;  4KOD A;  5FTJ A;  3GTQ A;  5C1B A;  2BE5 D;  2VPX A;  3CZB A;  2NVY A;  2NVX A;  1TWF A;  1I50 A;  1H0H A;  1K83 A;  2PJJ A;  3HKZ A;  2Y0S A;  3GTK A;  5FTL A;  2CW0 D;  1WCM A;  2JIR A;  4DMR A;  2E7Z A;  4GA6 A;  1H5N A;  1PQH A;  1TWA A;  1PPY A;  1QDN A;  3IR5 A;  3GTJ A;  1ZC1 A;  2IV2 X;  1Q16 A;  3HU3 A;  4AOK B;  1I3Q A;  2PJH B;  1I9G A;  4UC4 A;  4AAY A;  2NAP A;  1R9T A;  2C45 A;  2G5D A;  2NYA A;  1CZ5 A;  2KI8 A;  3CF2 A;  2R7Z A;  2E2H A;  5FTM A;  4KDI A;  4QIW A;  5T5I D;  2QQR A;  2PNW A;  1SFO A;  4AYB A;  1EU1 A;  4KLN A;  2E2I A;  1TWH A;  2JA7 A;  1CZ4 A;  2Q1A X;  1UHD A;  5CD1 A;  2G6G A;  4CQN A;  1G8K A;  1CR5 A;  2YU9 A;  1PQF A;  2JIM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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