3QQ8A

Crystal structure of p97-n in complex with faf1-ubx
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
177
structure length
177
Chain Sequence
DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein/apoptosis
molecule keywords Transitional endoplasmic reticulum ATPase
publication title Hierarchical Binding of Cofactors to the AAA ATPase p97.
pubmed doi rcsb
source organism Homo sapiens
total genus 47
structure length 177
sequence length 177
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qq8A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qq8A02
1AW8B 2VPYA 2NVYA 2YUJA 1TWCA 3HU2A 5C18A 1PT0A 1UHDA 2C45A 1R9TA 1E32A 1I3QA 2Y0SA 1WLFA 2YU9A 1G8JA 2WAQA 4AZDA 4AOKB 5EPPA 1E18A 5FTLA 2E2IA 4GA5A 1I50A 1PYQA 2WB1A 4CRYG 3GTKA 3TM7B 2VPWA 2V45A 4KDLA 4KO8A 1FDOA 1PQEA 2JIOA 1Q16A 3GTLA 2NYAA 1PYUB 1Y5IA 3CF2A 3PLXB 2R93A 2JA6A 3HU3A 4QIWA 1E61A 5FTJA 4KDIA 4KLNA 4AAYA 1EU1A 1PQFA 2VUMA 1PQHA 4CRZA 1WCMA 3GTGA 1CR5A 2VPXA 5FTMA 3O5AA 5GLFA 4C2MA 4AYBA 5FTNA 4AONB 1KQFA 1CZ5A 1R7RA 4RV0A 2R92A 3CQZA 1ZC1A 3QQ8A 1KQGA 5DYGA 1E60A 2JIRA 4DMRA 4GA6A 1FDIA 5C1BA 1TWAA 1DMRA 2E7ZA 2PMZA 5T5ID 3H0GA 1Y4ZA 1S3SA 3IR7A 2DMRA 2JA5A 1G8KA 3QWZA 1SIWA 3GTOA 5DYIA 1Y1WA 1CZ4A 1TWHA 2NAPA 3IR5A 2JIMA 1VC3B 1OGYA 1QCSA 1PT1A 2JIPA 3GTQA 5FTKA 1PPYA 4KODA 2B63A 1TWGA 3QQ7A 1AA6A 1K83A 4D7ZB 3GTPA 3QC8A 2JIQA 3GTMA 1TWFA 1YLEA 1H5NA 3IR6A 2PJHB 1QDNA 3DMRA 1SFOA 3FKIA 1TMOA 2EEOB 2R7ZA 1H0HA 1Y1VA 1UHEA 1E5VA 3GTJA 3HU1A 2NVXA 3OUGA 3ML1A 2KI8A 2V3VA 2JA7A 2E2HA 1DMSA 2JV2A 2VPZA 2IV2X 5T5MD 3TIWA 4CS0A 5B6CA 1IW7D 3HKZA 1R27A
chains in the Genus database with same CATH superfamily
1AW8B 4NOHA 1BW3A 2A68D 2VPYA 2NVYA 5D6WA 2YUJA 1TWCA 3HU2A 4FFTA 1HD5A 5C18A 1PT0A 2LW6A 1UHDA 5GLXA 2C45A 1R9TA 5CCBA 2G5DA 3X2KA 1E32A 2BH0A 1I3QA 1WC2A 2Y0SA 1O54A 1WLFA 2YU9A 3FPUA 1G8JA 2WAQA 4AZDA 1SMYD 4AOKB 5D6XA 2A6ED 3BQBA 5EPPA 1E18A 2Q1AX 5FTLA 4ARIA 2E2IA 4GA5A 1ZYRD 1I50A 1PYQA 2WB1A 4CRYG 3X2GA 3GTKA 3TM7B 2YVLA 4AS1A 2O5JD 2VPWA 2V45A 4KDLA 1OA9A 2BE5D 5GLYA 3SUKA 4KO8A 2QQSA 3LHDA 1FDOA 2HCZX 1OA7A 1PQEA 4JP6A 2JIOA 5EQJB 3X2PA 1Q16A 3MB5A 2KQAA 3ENGA 3GTLA 3X2NA 5GM9A 1I9GA 5CCXA 2NYAA 1PYUB 1Y5IA 3CF2A 3PLXB 3X2HA 2R93A 2JA6A 2XDPA 3HU3A 4QIWA 2CW0D 1E61A 5FTJA 4KDIA 4KLNA 3ZJTA 3X2MA 4AAYA 1EU1A 1PQFA 2A6HD 2VUMA 2Q18X 4L48A 1PQHA 4CRZA 1WCMA 3GTGA 2MM2A 2A69D 1CR5A 2VPXA 5FTMA 3O5AA 5GLFA 2QQRA 5CD1A 3M3GA 3X2LA 4ZM7A 4C2MA 4AYBA 5FTNA 4AONB 1KQFA 1CZ5A 1R7RA 4RV0A 3X2OA 1ZC1A 3CQZA 3QQ8A 1KQGA 5DYGA 2R92A 1E60A 4CQNA 2JIRA 4FG2A 4DMRA 4GA6A 3ZJUA 1FDIA 5C1BA 1TWAA 3ZGZA 2GAEA 1DMRA 4FERA 3X2IA 2E7ZA 3SUMA 2PMZA 5T5ID 3X2JA 2Q19X 5H4UA 3FPRA 1N10A 3H0GA 2PICA 1Y4ZA 1S3SA 3IR7A 2DMRA 2JA5A 1G8KA 3QWZA 1SIWA 3GTOA 5DYIA 1Y1WA 1CZ4A 1TWHA 5D6YA 2NAPA 3IR5A 2JIMA 2PJJA 1VC3B 1OGYA 5ERGB 3LGAA 3SULA 4AQ7A 1QCSA 2GF7A 1PT1A 2GFAA 2JIPA 3GTQA 5FTKA 1PPYA 4KODA 2B63A 2MM0A 1TWGA 3QQ7A 1AA6A 2Q1CX 1K83A 2AE0X 4JJOA 4UC4A 4D7ZB 3GTPA 3QC8A 2JIQA 3GTMA 1L8FA 1YNJD 4FG4A 1TWFA 2Q1DX 1YLEA 1H5NA 3IR6A 3ZJVA 2PJHB 1QDNA 3DMRA 1SFOA 3FKIA 1TMOA 4JP7A 2PWYA 2EEOB 2ENGA 2PNWA 1H0HA 1Y1VA 2R7ZA 1BW4A 1UHEA 4ARCA 1E5VA 3GTJA 3HU1A 4AVRA 2NVXA 2G6GA 3CZBA 2KY9A 3OUGA 3ML1A 2KI8A 2V3VA 2JA7A 1YNND 3D30A 2E2HA 2B25A 3SUJA 4FIBA 1DMSA 2PI8A 2VPZA 2JV2A 2IV2X 4JS7A 3FPTA 4ENGA 5T5MD 3TIWA 4CS0A 5B6CA 4JCWA 1IW7D 3HKZA 1R27A
chains in the Genus database with same CATH topology
1AW8B 4NOHA 5D6WA 2A68D 2VPYA 2NVYA 2YUJA 1TWCA 3HU2A 2LW6A 5C18A 1PT0A 1UHDA 2C45A 1R9TA 5CCBA 2G5DA 1E32A 1I3QA 2Y0SA 1O54A 1WLFA 2YU9A 3FPUA 1G8JA 2WAQA 4AZDA 1SMYD 4AOKB 5D6XA 2A6ED 3BQBA 5EPPA 1E18A 2Q1AX 5FTLA 4ARIA 2E2IA 4GA5A 1ZYRD 1I50A 1PYQA 2WB1A 4CRYG 3GTKA 3TM7B 2YVLA 4AS1A 2O5JD 2VPWA 2V45A 4KDLA 2BE5D 3LHDA 4KO8A 2QQSA 1FDOA 1PQEA 5EQJB 2JIOA 1Q16A 3MB5A 3GTLA 1I9GA 5CCXA 2NYAA 1PYUB 1Y5IA 3CF2A 3PLXB 2R93A 2XDPA 2JA6A 3HU3A 4QIWA 2CW0D 1E61A 5FTJA 4KDIA 4KLNA 3ZJTA 4AAYA 1EU1A 1PQFA 2A6HD 2VUMA 2Q18X 1PQHA 4CRZA 1WCMA 3GTGA 2MM2A 2A69D 1CR5A 2VPXA 5FTMA 3O5AA 5GLFA 2QQRA 5CD1A 4C2MA 4AYBA 5FTNA 4AONB 1KQFA 1CZ5A 1R7RA 4RV0A 2R92A 1ZC1A 3CQZA 3QQ8A 1KQGA 5DYGA 1E60A 4CQNA 2JIRA 4DMRA 4GA6A 3ZJUA 1FDIA 5C1BA 1TWAA 3ZGZA 2GAEA 1DMRA 2E7ZA 2PMZA 5T5ID 2Q19X 3FPRA 3H0GA 2PICA 1Y4ZA 1S3SA 3IR7A 2DMRA 2JA5A 1G8KA 3QWZA 1SIWA 3GTOA 5DYIA 1Y1WA 1CZ4A 1TWHA 5D6YA 2NAPA 3IR5A 2JIMA 2PJJA 1VC3B 1OGYA 5ERGB 3LGAA 4AQ7A 1QCSA 2GF7A 1PT1A 2GFAA 2JIPA 3GTQA 5FTKA 1PPYA 4KODA 2B63A 2MM0A 1TWGA 3QQ7A 1AA6A 2Q1CX 1K83A 2AE0X 4UC4A 4D7ZB 3GTPA 3QC8A 2JIQA 3GTMA 1YNJD 1TWFA 2Q1DX 1YLEA 1H5NA 3IR6A 3ZJVA 2PJHB 1QDNA 3DMRA 1SFOA 3FKIA 1TMOA 2PWYA 2EEOB 2PNWA 2R7ZA 1H0HA 1Y1VA 4ARCA 1UHEA 1E5VA 3GTJA 3HU1A 2NVXA 2G6GA 3CZBA 2KY9A 3OUGA 3ML1A 2KI8A 2V3VA 2JA7A 1YNND 2B25A 2E2HA 4FIBA 1DMSA 2PI8A 2VPZA 2JV2A 2IV2X 3FPTA 5T5MD 3TIWA 4CS0A 5B6CA 1IW7D 3HKZA 1R27A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AW8 B;  2VPY A;  2NVY A;  2YUJ A;  1TWC A;  3HU2 A;  5C18 A;  1PT0 A;  1UHD A;  2C45 A;  1R9T A;  1E32 A;  1I3Q A;  2Y0S A;  1WLF A;  2YU9 A;  1G8J A;  2WAQ A;  4AZD A;  4AOK B;  5EPP A;  1E18 A;  5FTL A;  2E2I A;  4GA5 A;  1I50 A;  1PYQ A;  2WB1 A;  4CRY G;  3GTK A;  3TM7 B;  2VPW A;  2V45 A;  4KDL A;  4KO8 A;  1FDO A;  1PQE A;  2JIO A;  1Q16 A;  3GTL A;  2NYA A;  1PYU B;  1Y5I A;  3CF2 A;  3PLX B;  2R93 A;  2JA6 A;  3HU3 A;  4QIW A;  1E61 A;  5FTJ A;  4KDI A;  4KLN A;  4AAY A;  1EU1 A;  1PQF A;  2VUM A;  1PQH A;  4CRZ A;  1WCM A;  3GTG A;  1CR5 A;  2VPX A;  5FTM A;  3O5A A;  5GLF A;  4C2M A;  4AYB A;  5FTN A;  4AON B;  1KQF A;  1CZ5 A;  1R7R A;  4RV0 A;  2R92 A;  3CQZ A;  1ZC1 A;  3QQ8 A;  1KQG A;  5DYG A;  1E60 A;  2JIR A;  4DMR A;  4GA6 A;  1FDI A;  5C1B A;  1TWA A;  1DMR A;  2E7Z A;  2PMZ A;  5T5I D;  3H0G A;  1Y4Z A;  1S3S A;  3IR7 A;  2DMR A;  2JA5 A;  1G8K A;  3QWZ A;  1SIW A;  3GTO A;  5DYI A;  1Y1W A;  1CZ4 A;  1TWH A;  2NAP A;  3IR5 A;  2JIM A;  1VC3 B;  1OGY A;  1QCS A;  1PT1 A;  2JIP A;  3GTQ A;  5FTK A;  1PPY A;  4KOD A;  2B63 A;  1TWG A;  3QQ7 A;  1AA6 A;  1K83 A;  4D7Z B;  3GTP A;  3QC8 A;  2JIQ A;  3GTM A;  1TWF A;  1YLE A;  1H5N A;  3IR6 A;  2PJH B;  1QDN A;  3DMR A;  1SFO A;  3FKI A;  1TMO A;  2EEO B;  2R7Z A;  1H0H A;  1Y1V A;  1UHE A;  1E5V A;  3GTJ A;  3HU1 A;  2NVX A;  3OUG A;  3ML1 A;  2KI8 A;  2V3V A;  2JA7 A;  2E2H A;  1DMS A;  2JV2 A;  2VPZ A;  2IV2 X;  5T5M D;  3TIW A;  4CS0 A;  5B6C A;  1IW7 D;  3HKZ A;  1R27 A; 
#chains in the Genus database with same CATH topology
 1AW8 B;  4NOH A;  1BW3 A;  2A68 D;  2VPY A;  2NVY A;  5D6W A;  2YUJ A;  1TWC A;  3HU2 A;  4FFT A;  1HD5 A;  5C18 A;  1PT0 A;  2LW6 A;  1UHD A;  5GLX A;  2C45 A;  1R9T A;  5CCB A;  2G5D A;  3X2K A;  1E32 A;  2BH0 A;  1I3Q A;  1WC2 A;  2Y0S A;  1O54 A;  1WLF A;  2YU9 A;  3FPU A;  1G8J A;  2WAQ A;  4AZD A;  1SMY D;  4AOK B;  5D6X A;  2A6E D;  3BQB A;  5EPP A;  1E18 A;  2Q1A X;  5FTL A;  4ARI A;  2E2I A;  4GA5 A;  1ZYR D;  1I50 A;  1PYQ A;  2WB1 A;  4CRY G;  3X2G A;  3GTK A;  3TM7 B;  2YVL A;  4AS1 A;  2O5J D;  2VPW A;  2V45 A;  4KDL A;  1OA9 A;  2BE5 D;  5GLY A;  3SUK A;  4KO8 A;  2QQS A;  3LHD A;  1FDO A;  2HCZ X;  1OA7 A;  1PQE A;  4JP6 A;  2JIO A;  5EQJ B;  3X2P A;  1Q16 A;  3MB5 A;  2KQA A;  3ENG A;  3GTL A;  3X2N A;  5GM9 A;  1I9G A;  5CCX A;  2NYA A;  1PYU B;  1Y5I A;  3CF2 A;  3PLX B;  3X2H A;  2R93 A;  2JA6 A;  2XDP A;  3HU3 A;  4QIW A;  2CW0 D;  1E61 A;  5FTJ A;  4KDI A;  4KLN A;  3ZJT A;  3X2M A;  4AAY A;  1EU1 A;  1PQF A;  2A6H D;  2VUM A;  2Q18 X;  4L48 A;  1PQH A;  4CRZ A;  1WCM A;  3GTG A;  2MM2 A;  2A69 D;  1CR5 A;  2VPX A;  5FTM A;  3O5A A;  5GLF A;  2QQR A;  5CD1 A;  3M3G A;  3X2L A;  4ZM7 A;  4C2M A;  4AYB A;  5FTN A;  4AON B;  1KQF A;  1CZ5 A;  1R7R A;  4RV0 A;  3X2O A;  1ZC1 A;  3CQZ A;  3QQ8 A;  1KQG A;  5DYG A;  2R92 A;  1E60 A;  4CQN A;  2JIR A;  4FG2 A;  4DMR A;  4GA6 A;  3ZJU A;  1FDI A;  5C1B A;  1TWA A;  3ZGZ A;  2GAE A;  1DMR A;  4FER A;  3X2I A;  2E7Z A;  3SUM A;  2PMZ A;  5T5I D;  3X2J A;  2Q19 X;  5H4U A;  3FPR A;  1N10 A;  3H0G A;  2PIC A;  1Y4Z A;  1S3S A;  3IR7 A;  2DMR A;  2JA5 A;  1G8K A;  3QWZ A;  1SIW A;  3GTO A;  5DYI A;  1Y1W A;  1CZ4 A;  1TWH A;  5D6Y A;  2NAP A;  3IR5 A;  2JIM A;  2PJJ A;  1VC3 B;  1OGY A;  5ERG B;  3LGA A;  3SUL A;  4AQ7 A;  1QCS A;  2GF7 A;  1PT1 A;  2GFA A;  2JIP A;  3GTQ A;  5FTK A;  1PPY A;  4KOD A;  2B63 A;  2MM0 A;  1TWG A;  3QQ7 A;  1AA6 A;  2Q1C X;  1K83 A;  2AE0 X;  4JJO A;  4UC4 A;  4D7Z B;  3GTP A;  3QC8 A;  2JIQ A;  3GTM A;  1L8F A;  1YNJ D;  4FG4 A;  1TWF A;  2Q1D X;  1YLE A;  1H5N A;  3IR6 A;  3ZJV A;  2PJH B;  1QDN A;  3DMR A;  1SFO A;  3FKI A;  1TMO A;  4JP7 A;  2PWY A;  2EEO B;  2ENG A;  2PNW A;  1H0H A;  1Y1V A;  2R7Z A;  1BW4 A;  1UHE A;  4ARC A;  1E5V A;  3GTJ A;  3HU1 A;  4AVR A;  2NVX A;  2G6G A;  3CZB A;  2KY9 A;  3OUG A;  3ML1 A;  2KI8 A;  2V3V A;  2JA7 A;  1YNN D;  3D30 A;  2E2H A;  2B25 A;  3SUJ A;  4FIB A;  1DMS A;  2PI8 A;  2VPZ A;  2JV2 A;  2IV2 X;  4JS7 A;  3FPT A;  4ENG A;  5T5M D;  3TIW A;  4CS0 A;  5B6C A;  4JCW A;  1IW7 D;  3HKZ A;  1R27 A; 
#chains in the Genus database with same CATH homology
 1AW8 B;  4NOH A;  5D6W A;  2A68 D;  2VPY A;  2NVY A;  2YUJ A;  1TWC A;  3HU2 A;  2LW6 A;  5C18 A;  1PT0 A;  1UHD A;  2C45 A;  1R9T A;  5CCB A;  2G5D A;  1E32 A;  1I3Q A;  2Y0S A;  1O54 A;  1WLF A;  2YU9 A;  3FPU A;  1G8J A;  2WAQ A;  4AZD A;  1SMY D;  4AOK B;  5D6X A;  2A6E D;  3BQB A;  5EPP A;  1E18 A;  2Q1A X;  5FTL A;  4ARI A;  2E2I A;  4GA5 A;  1ZYR D;  1I50 A;  1PYQ A;  2WB1 A;  4CRY G;  3GTK A;  3TM7 B;  2YVL A;  4AS1 A;  2O5J D;  2VPW A;  2V45 A;  4KDL A;  2BE5 D;  3LHD A;  4KO8 A;  2QQS A;  1FDO A;  1PQE A;  5EQJ B;  2JIO A;  1Q16 A;  3MB5 A;  3GTL A;  1I9G A;  5CCX A;  2NYA A;  1PYU B;  1Y5I A;  3CF2 A;  3PLX B;  2R93 A;  2XDP A;  2JA6 A;  3HU3 A;  4QIW A;  2CW0 D;  1E61 A;  5FTJ A;  4KDI A;  4KLN A;  3ZJT A;  4AAY A;  1EU1 A;  1PQF A;  2A6H D;  2VUM A;  2Q18 X;  1PQH A;  4CRZ A;  1WCM A;  3GTG A;  2MM2 A;  2A69 D;  1CR5 A;  2VPX A;  5FTM A;  3O5A A;  5GLF A;  2QQR A;  5CD1 A;  4C2M A;  4AYB A;  5FTN A;  4AON B;  1KQF A;  1CZ5 A;  1R7R A;  4RV0 A;  2R92 A;  1ZC1 A;  3CQZ A;  3QQ8 A;  1KQG A;  5DYG A;  1E60 A;  4CQN A;  2JIR A;  4DMR A;  4GA6 A;  3ZJU A;  1FDI A;  5C1B A;  1TWA A;  3ZGZ A;  2GAE A;  1DMR A;  2E7Z A;  2PMZ A;  5T5I D;  2Q19 X;  3FPR A;  3H0G A;  2PIC A;  1Y4Z A;  1S3S A;  3IR7 A;  2DMR A;  2JA5 A;  1G8K A;  3QWZ A;  1SIW A;  3GTO A;  5DYI A;  1Y1W A;  1CZ4 A;  1TWH A;  5D6Y A;  2NAP A;  3IR5 A;  2JIM A;  2PJJ A;  1VC3 B;  1OGY A;  5ERG B;  3LGA A;  4AQ7 A;  1QCS A;  2GF7 A;  1PT1 A;  2GFA A;  2JIP A;  3GTQ A;  5FTK A;  1PPY A;  4KOD A;  2B63 A;  2MM0 A;  1TWG A;  3QQ7 A;  1AA6 A;  2Q1C X;  1K83 A;  2AE0 X;  4UC4 A;  4D7Z B;  3GTP A;  3QC8 A;  2JIQ A;  3GTM A;  1YNJ D;  1TWF A;  2Q1D X;  1YLE A;  1H5N A;  3IR6 A;  3ZJV A;  2PJH B;  1QDN A;  3DMR A;  1SFO A;  3FKI A;  1TMO A;  2PWY A;  2EEO B;  2PNW A;  2R7Z A;  1H0H A;  1Y1V A;  4ARC A;  1UHE A;  1E5V A;  3GTJ A;  3HU1 A;  2NVX A;  2G6G A;  3CZB A;  2KY9 A;  3OUG A;  3ML1 A;  2KI8 A;  2V3V A;  2JA7 A;  1YNN D;  2B25 A;  2E2H A;  4FIB A;  1DMS A;  2PI8 A;  2VPZ A;  2JV2 A;  2IV2 X;  3FPT A;  5T5M D;  3TIW A;  4CS0 A;  5B6C A;  1IW7 D;  3HKZ A;  1R27 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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