3QQ8A

Crystal structure of p97-n in complex with faf1-ubx
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
177
structure length
177
Chain Sequence
DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Transitional endoplasmic reticulum ATPase
publication title Hierarchical Binding of Cofactors to the AAA ATPase p97.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Transport protein/apoptosis
total genus 47
structure length 177
sequence length 177
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qq8A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qq8A02
1R7RA 3HU2A 2JIOA 1UHEA 4D7ZB 2V45A 5FTNA 2JA5A 1G8JA 2JV2A 3TIWA 4AAYA 5GLFA 4CS0A 3TM7B 3GTOA 2VPZA 1UHDA 2WAQA 2YU9A 2R7ZA 1ZC1A 1Q16A 2KI8A 4CRZA 1Y1VA 2E2HA 1I3QA 5FTLA 3HU3A 3QC8A 2NYAA 4AOKB 1I50A 1H0HA 5C1BA 2PJHB 1KQGA 1QCSA 3QQ8A 3QQ7A 2R93A 1CZ5A 1QDNA 5FTMA 1Y5IA 1R27A 3FKIA 4CRYG 1TWAA 3GTQA 2WB1A 3GTKA 5C18A 1G8KA 1SIWA 1E18A 1CZ4A 3GTJA 4GA6A 2C45A 2VPYA 1Y1WA 1PPYA 1WCMA 2IV2X 1E5VA 2Y0SA 4KODA 4RV0A 2VPWA 2V3VA 2JIMA 1H5NA 5FTJA 1PYUB 3OUGA 1YLEA 2R92A 2NVXA 2JA7A 2NVYA 4AYBA 1DMSA 4QIWA 2JIRA 5B6CA 3GTGA 3QWZA 1PT1A 1AA6A 1PT0A 1E61A 3GTPA 1TWGA 2EEOB 3DMRA 1PYQA 3GTLA 1E32A 4KLNA 2JA6A 1TWCA 1PQFA 2E2IA 1OGYA 1VC3B 3ML1A 2B63A 3IR5A 3O5AA 3IR7A 1FDOA 5DYGA 3GTMA 2VUMA 4DMRA 1SFOA 4AZDA 2VPXA 1IW7D 1DMRA 1FDIA 1PQHA 2JIPA 1PQEA 3HU1A 4KDLA 1TMOA 3PLXB 2PMZA 3HKZA 1R9TA 2YUJA 2JIQA 5T5ID 1TWFA 1S3SA 4KDIA 3IR6A 1AW8B 1TWHA 5EPPA 5DYIA 5FTKA 2NAPA 1WLFA 4AONB 1K83A 1CR5A 2DMRA 1E60A 3H0GA 2E7ZA 1Y4ZA 1KQFA 4GA5A 3CQZA 4C2MA 4KO8A 3CF2A 1EU1A 5T5MD
chains in the Genus database with same CATH superfamily
2BE5D 1R7RA 3HU2A 3ZJUA 4UC4A 2JIOA 2O5JD 1OA9A 1UHEA 2V45A 4FFTA 4JCWA 5FTNA 5GLYA 4D7ZB 5CD1A 2CW0D 2JA5A 1G8JA 5H4UA 2JV2A 3X2LA 3TIWA 4AAYA 4FERA 5GLFA 3TM7B 4CS0A 3GTOA 2VPZA 1UHDA 1N10A 2WAQA 2YU9A 2R7ZA 1ZC1A 1Q16A 2PWYA 2KI8A 4CRZA 2Q18X 4CQNA 1Y1VA 5D6YA 2E2HA 1I3QA 1BW4A 3D30A 5FTLA 3HU3A 3QC8A 2A6HD 2NYAA 4L48A 4AOKB 1H0HA 5C1BA 1I50A 2PJHB 5D6XA 1KQGA 1QCSA 3QQ8A 1YNJD 3QQ7A 2R93A 1CZ5A 2Q1CX 1QDNA 2PJJA 5FTMA 5CCXA 1Y5IA 1R27A 3FKIA 4CRYG 4ARIA 1TWAA 2PNWA 2WB1A 3GTQA 3GTKA 3BQBA 5C18A 3FPRA 1G8KA 1SIWA 4FG2A 3M3GA 2LW6A 1E18A 1CZ4A 2GAEA 3SUKA 3GTJA 4JJOA 2AE0X 2C45A 2VPYA 4GA6A 1PPYA 1WCMA 1Y1WA 3FPTA 4JP6A 2IV2X 1L8FA 1E5VA 2Y0SA 3X2JA 4KODA 4NOHA 4RV0A 3X2KA 2A68D 1BW3A 2VPWA 2V3VA 2JIMA 1H5NA 2Q19X 5FTJA 3CZBA 3SUJA 3MB5A 1PYUB 3OUGA 1YLEA 1SMYD 2R92A 2NVXA 2JA7A 2Q1DX 2NVYA 4AYBA 1DMSA 4QIWA 2JIRA 2QQRA 5B6CA 2KY9A 3GTGA 3QWZA 4ENGA 1PT1A 1AA6A 5CCBA 4JP7A 1PT0A 1E61A 3GTPA 1TWGA 2EEOB 2PI8A 3DMRA 1PYQA 1I9GA 4ZM7A 3X2HA 2G6GA 3X2PA 3LHDA 3GTLA 1E32A 4KLNA 5D6WA 2G5DA 4AQ7A 2JA6A 4AS1A 1TWCA 2MM2A 1PQFA 1ZYRD 2E2IA 1OGYA 1VC3B 2PICA 3ML1A 4FG4A 5GM9A 3LGAA 4AVRA 4ARCA 2B63A 3IR5A 3O5AA 3IR7A 2XDPA 2BH0A 1FDOA 3X2GA 5DYGA 3GTMA 2VUMA 3ZJTA 4DMRA 1SFOA 4AZDA 1WC2A 2VPXA 1IW7D 1DMRA 1FDIA 1PQHA 3ENGA 1PQEA 2JIPA 3HU1A 2GFAA 2B25A 4KDLA 3SULA 1TMOA 3PLXB 5ERGB 2PMZA 3HKZA 5EQJB 3ZGZA 4FIBA 1R9TA 2A69D 3ZJVA 3X2MA 2YUJA 2MM0A 2JIQA 5T5ID 1TWFA 2Q1AX 1S3SA 4KDIA 3IR6A 1AW8B 1TWHA 5EPPA 1OA7A 2HCZX 1YNND 5DYIA 5FTKA 3SUMA 2NAPA 4JS7A 1WLFA 4AONB 2GF7A 1K83A 1CR5A 2DMRA 1E60A 3H0GA 2E7ZA 5GLXA 2A6ED 1Y4ZA 2ENGA 3X2OA 1KQFA 4GA5A 1HD5A 3CQZA 3X2IA 4C2MA 1O54A 2YVLA 4KO8A 3FPUA 2QQSA 3CF2A 1EU1A 3X2NA 5T5MD 2KQAA
chains in the Genus database with same CATH topology
2BE5D 1R7RA 3HU2A 3ZJUA 4UC4A 2JIOA 2O5JD 1UHEA 4D7ZB 2V45A 5FTNA 5CD1A 2CW0D 2JA5A 1G8JA 2JV2A 3TIWA 4AAYA 5GLFA 4CS0A 3TM7B 3GTOA 2VPZA 1UHDA 2WAQA 2YU9A 2R7ZA 1ZC1A 1Q16A 2PWYA 2KI8A 4CRZA 2Q18X 4CQNA 1Y1VA 5D6YA 2E2HA 1I3QA 5FTLA 3HU3A 3QC8A 2A6HD 2NYAA 4AOKB 1I50A 1H0HA 5C1BA 2PJHB 5D6XA 1KQGA 1QCSA 3QQ8A 1YNJD 3QQ7A 2R93A 1CZ5A 2Q1CX 1QDNA 2PJJA 5FTMA 5CCXA 1Y5IA 1R27A 3FKIA 4CRYG 4ARIA 1TWAA 2PNWA 2WB1A 3GTQA 3GTKA 3BQBA 5C18A 3FPRA 1G8KA 1SIWA 2LW6A 1E18A 1CZ4A 2GAEA 3GTJA 2AE0X 2C45A 2VPYA 4GA6A 1PPYA 1WCMA 1Y1WA 3FPTA 2IV2X 1E5VA 2Y0SA 4KODA 4NOHA 4RV0A 2A68D 2VPWA 2V3VA 2JIMA 1H5NA 2Q19X 5FTJA 3CZBA 3MB5A 1PYUB 3OUGA 1YLEA 1SMYD 2R92A 2NVXA 2JA7A 2Q1DX 2NVYA 4AYBA 1DMSA 4QIWA 2JIRA 2QQRA 5B6CA 2KY9A 3GTGA 3QWZA 1PT1A 1AA6A 5CCBA 1PT0A 1E61A 3GTPA 1TWGA 2EEOB 2PI8A 3DMRA 1PYQA 1I9GA 3LHDA 2G6GA 3GTLA 1E32A 4KLNA 5D6WA 2G5DA 4AQ7A 2JA6A 4AS1A 1TWCA 2MM2A 1PQFA 1ZYRD 2E2IA 1OGYA 1VC3B 2PICA 3ML1A 3LGAA 4ARCA 2B63A 3IR5A 3O5AA 3IR7A 2XDPA 1FDOA 5DYGA 3GTMA 2VUMA 3ZJTA 4DMRA 1SFOA 4AZDA 2VPXA 1IW7D 1DMRA 1FDIA 1PQHA 2JIPA 1PQEA 3HU1A 2GFAA 2B25A 4KDLA 1TMOA 3PLXB 5ERGB 2PMZA 3HKZA 5EQJB 3ZGZA 4FIBA 1R9TA 2A69D 3ZJVA 2YUJA 2MM0A 2JIQA 5T5ID 1TWFA 2Q1AX 1S3SA 4KDIA 3IR6A 1AW8B 1TWHA 5EPPA 1YNND 5DYIA 5FTKA 2NAPA 1WLFA 4AONB 2GF7A 1K83A 1CR5A 2DMRA 1E60A 3H0GA 2E7ZA 2A6ED 1Y4ZA 1KQFA 4GA5A 3CQZA 4C2MA 1O54A 2YVLA 4KO8A 3FPUA 2QQSA 3CF2A 1EU1A 5T5MD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R7R A;  3HU2 A;  2JIO A;  1UHE A;  4D7Z B;  2V45 A;  5FTN A;  2JA5 A;  1G8J A;  2JV2 A;  3TIW A;  4AAY A;  5GLF A;  4CS0 A;  3TM7 B;  3GTO A;  2VPZ A;  1UHD A;  2WAQ A;  2YU9 A;  2R7Z A;  1ZC1 A;  1Q16 A;  2KI8 A;  4CRZ A;  1Y1V A;  2E2H A;  1I3Q A;  5FTL A;  3HU3 A;  3QC8 A;  2NYA A;  4AOK B;  1I50 A;  1H0H A;  5C1B A;  2PJH B;  1KQG A;  1QCS A;  3QQ8 A;  3QQ7 A;  2R93 A;  1CZ5 A;  1QDN A;  5FTM A;  1Y5I A;  1R27 A;  3FKI A;  4CRY G;  1TWA A;  3GTQ A;  2WB1 A;  3GTK A;  5C18 A;  1G8K A;  1SIW A;  1E18 A;  1CZ4 A;  3GTJ A;  4GA6 A;  2C45 A;  2VPY A;  1Y1W A;  1PPY A;  1WCM A;  2IV2 X;  1E5V A;  2Y0S A;  4KOD A;  4RV0 A;  2VPW A;  2V3V A;  2JIM A;  1H5N A;  5FTJ A;  1PYU B;  3OUG A;  1YLE A;  2R92 A;  2NVX A;  2JA7 A;  2NVY A;  4AYB A;  1DMS A;  4QIW A;  2JIR A;  5B6C A;  3GTG A;  3QWZ A;  1PT1 A;  1AA6 A;  1PT0 A;  1E61 A;  3GTP A;  1TWG A;  2EEO B;  3DMR A;  1PYQ A;  3GTL A;  1E32 A;  4KLN A;  2JA6 A;  1TWC A;  1PQF A;  2E2I A;  1OGY A;  1VC3 B;  3ML1 A;  2B63 A;  3IR5 A;  3O5A A;  3IR7 A;  1FDO A;  5DYG A;  3GTM A;  2VUM A;  4DMR A;  1SFO A;  4AZD A;  2VPX A;  1IW7 D;  1DMR A;  1FDI A;  1PQH A;  2JIP A;  1PQE A;  3HU1 A;  4KDL A;  1TMO A;  3PLX B;  2PMZ A;  3HKZ A;  1R9T A;  2YUJ A;  2JIQ A;  5T5I D;  1TWF A;  1S3S A;  4KDI A;  3IR6 A;  1AW8 B;  1TWH A;  5EPP A;  5DYI A;  5FTK A;  2NAP A;  1WLF A;  4AON B;  1K83 A;  1CR5 A;  2DMR A;  1E60 A;  3H0G A;  2E7Z A;  1Y4Z A;  1KQF A;  4GA5 A;  3CQZ A;  4C2M A;  4KO8 A;  3CF2 A;  1EU1 A;  5T5M D; 
#chains in the Genus database with same CATH topology
 2BE5 D;  1R7R A;  3HU2 A;  3ZJU A;  4UC4 A;  2JIO A;  2O5J D;  1OA9 A;  1UHE A;  2V45 A;  4FFT A;  4JCW A;  5FTN A;  5GLY A;  4D7Z B;  5CD1 A;  2CW0 D;  2JA5 A;  1G8J A;  5H4U A;  2JV2 A;  3X2L A;  3TIW A;  4AAY A;  4FER A;  5GLF A;  3TM7 B;  4CS0 A;  3GTO A;  2VPZ A;  1UHD A;  1N10 A;  2WAQ A;  2YU9 A;  2R7Z A;  1ZC1 A;  1Q16 A;  2PWY A;  2KI8 A;  4CRZ A;  2Q18 X;  4CQN A;  1Y1V A;  5D6Y A;  2E2H A;  1I3Q A;  1BW4 A;  3D30 A;  5FTL A;  3HU3 A;  3QC8 A;  2A6H D;  2NYA A;  4L48 A;  4AOK B;  1H0H A;  5C1B A;  1I50 A;  2PJH B;  5D6X A;  1KQG A;  1QCS A;  3QQ8 A;  1YNJ D;  3QQ7 A;  2R93 A;  1CZ5 A;  2Q1C X;  1QDN A;  2PJJ A;  5FTM A;  5CCX A;  1Y5I A;  1R27 A;  3FKI A;  4CRY G;  4ARI A;  1TWA A;  2PNW A;  2WB1 A;  3GTQ A;  3GTK A;  3BQB A;  5C18 A;  3FPR A;  1G8K A;  1SIW A;  4FG2 A;  3M3G A;  2LW6 A;  1E18 A;  1CZ4 A;  2GAE A;  3SUK A;  3GTJ A;  4JJO A;  2AE0 X;  2C45 A;  2VPY A;  4GA6 A;  1PPY A;  1WCM A;  1Y1W A;  3FPT A;  4JP6 A;  2IV2 X;  1L8F A;  1E5V A;  2Y0S A;  3X2J A;  4KOD A;  4NOH A;  4RV0 A;  3X2K A;  2A68 D;  1BW3 A;  2VPW A;  2V3V A;  2JIM A;  1H5N A;  2Q19 X;  5FTJ A;  3CZB A;  3SUJ A;  3MB5 A;  1PYU B;  3OUG A;  1YLE A;  1SMY D;  2R92 A;  2NVX A;  2JA7 A;  2Q1D X;  2NVY A;  4AYB A;  1DMS A;  4QIW A;  2JIR A;  2QQR A;  5B6C A;  2KY9 A;  3GTG A;  3QWZ A;  4ENG A;  1PT1 A;  1AA6 A;  5CCB A;  4JP7 A;  1PT0 A;  1E61 A;  3GTP A;  1TWG A;  2EEO B;  2PI8 A;  3DMR A;  1PYQ A;  1I9G A;  4ZM7 A;  3X2H A;  2G6G A;  3X2P A;  3LHD A;  3GTL A;  1E32 A;  4KLN A;  5D6W A;  2G5D A;  4AQ7 A;  2JA6 A;  4AS1 A;  1TWC A;  2MM2 A;  1PQF A;  1ZYR D;  2E2I A;  1OGY A;  1VC3 B;  2PIC A;  3ML1 A;  4FG4 A;  5GM9 A;  3LGA A;  4AVR A;  4ARC A;  2B63 A;  3IR5 A;  3O5A A;  3IR7 A;  2XDP A;  2BH0 A;  1FDO A;  3X2G A;  5DYG A;  3GTM A;  2VUM A;  3ZJT A;  4DMR A;  1SFO A;  4AZD A;  1WC2 A;  2VPX A;  1IW7 D;  1DMR A;  1FDI A;  1PQH A;  3ENG A;  1PQE A;  2JIP A;  3HU1 A;  2GFA A;  2B25 A;  4KDL A;  3SUL A;  1TMO A;  3PLX B;  5ERG B;  2PMZ A;  3HKZ A;  5EQJ B;  3ZGZ A;  4FIB A;  1R9T A;  2A69 D;  3ZJV A;  3X2M A;  2YUJ A;  2MM0 A;  2JIQ A;  5T5I D;  1TWF A;  2Q1A X;  1S3S A;  4KDI A;  3IR6 A;  1AW8 B;  1TWH A;  5EPP A;  1OA7 A;  2HCZ X;  1YNN D;  5DYI A;  5FTK A;  3SUM A;  2NAP A;  4JS7 A;  1WLF A;  4AON B;  2GF7 A;  1K83 A;  1CR5 A;  2DMR A;  1E60 A;  3H0G A;  2E7Z A;  5GLX A;  2A6E D;  1Y4Z A;  2ENG A;  3X2O A;  1KQF A;  4GA5 A;  1HD5 A;  3CQZ A;  3X2I A;  4C2M A;  1O54 A;  2YVL A;  4KO8 A;  3FPU A;  2QQS A;  3CF2 A;  1EU1 A;  3X2N A;  5T5M D;  2KQA A; 
#chains in the Genus database with same CATH homology
 2BE5 D;  1R7R A;  3HU2 A;  3ZJU A;  4UC4 A;  2JIO A;  2O5J D;  1UHE A;  4D7Z B;  2V45 A;  5FTN A;  5CD1 A;  2CW0 D;  2JA5 A;  1G8J A;  2JV2 A;  3TIW A;  4AAY A;  5GLF A;  4CS0 A;  3TM7 B;  3GTO A;  2VPZ A;  1UHD A;  2WAQ A;  2YU9 A;  2R7Z A;  1ZC1 A;  1Q16 A;  2PWY A;  2KI8 A;  4CRZ A;  2Q18 X;  4CQN A;  1Y1V A;  5D6Y A;  2E2H A;  1I3Q A;  5FTL A;  3HU3 A;  3QC8 A;  2A6H D;  2NYA A;  4AOK B;  1I50 A;  1H0H A;  5C1B A;  2PJH B;  5D6X A;  1KQG A;  1QCS A;  3QQ8 A;  1YNJ D;  3QQ7 A;  2R93 A;  1CZ5 A;  2Q1C X;  1QDN A;  2PJJ A;  5FTM A;  5CCX A;  1Y5I A;  1R27 A;  3FKI A;  4CRY G;  4ARI A;  1TWA A;  2PNW A;  2WB1 A;  3GTQ A;  3GTK A;  3BQB A;  5C18 A;  3FPR A;  1G8K A;  1SIW A;  2LW6 A;  1E18 A;  1CZ4 A;  2GAE A;  3GTJ A;  2AE0 X;  2C45 A;  2VPY A;  4GA6 A;  1PPY A;  1WCM A;  1Y1W A;  3FPT A;  2IV2 X;  1E5V A;  2Y0S A;  4KOD A;  4NOH A;  4RV0 A;  2A68 D;  2VPW A;  2V3V A;  2JIM A;  1H5N A;  2Q19 X;  5FTJ A;  3CZB A;  3MB5 A;  1PYU B;  3OUG A;  1YLE A;  1SMY D;  2R92 A;  2NVX A;  2JA7 A;  2Q1D X;  2NVY A;  4AYB A;  1DMS A;  4QIW A;  2JIR A;  2QQR A;  5B6C A;  2KY9 A;  3GTG A;  3QWZ A;  1PT1 A;  1AA6 A;  5CCB A;  1PT0 A;  1E61 A;  3GTP A;  1TWG A;  2EEO B;  2PI8 A;  3DMR A;  1PYQ A;  1I9G A;  3LHD A;  2G6G A;  3GTL A;  1E32 A;  4KLN A;  5D6W A;  2G5D A;  4AQ7 A;  2JA6 A;  4AS1 A;  1TWC A;  2MM2 A;  1PQF A;  1ZYR D;  2E2I A;  1OGY A;  1VC3 B;  2PIC A;  3ML1 A;  3LGA A;  4ARC A;  2B63 A;  3IR5 A;  3O5A A;  3IR7 A;  2XDP A;  1FDO A;  5DYG A;  3GTM A;  2VUM A;  3ZJT A;  4DMR A;  1SFO A;  4AZD A;  2VPX A;  1IW7 D;  1DMR A;  1FDI A;  1PQH A;  2JIP A;  1PQE A;  3HU1 A;  2GFA A;  2B25 A;  4KDL A;  1TMO A;  3PLX B;  5ERG B;  2PMZ A;  3HKZ A;  5EQJ B;  3ZGZ A;  4FIB A;  1R9T A;  2A69 D;  3ZJV A;  2YUJ A;  2MM0 A;  2JIQ A;  5T5I D;  1TWF A;  2Q1A X;  1S3S A;  4KDI A;  3IR6 A;  1AW8 B;  1TWH A;  5EPP A;  1YNN D;  5DYI A;  5FTK A;  2NAP A;  1WLF A;  4AON B;  2GF7 A;  1K83 A;  1CR5 A;  2DMR A;  1E60 A;  3H0G A;  2E7Z A;  2A6E D;  1Y4Z A;  1KQF A;  4GA5 A;  3CQZ A;  4C2M A;  1O54 A;  2YVL A;  4KO8 A;  3FPU A;  2QQS A;  3CF2 A;  1EU1 A;  5T5M D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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