1ZC1A

Ufd1 exhibits the aaa-atpase fold with two distinct ubiquitin interaction sites
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
208
structure length
208
Chain Sequence
MFSGFSSFGGGNGFVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVGYVEPDYK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein turnover
molecule keywords Ubiquitin fusion degradation protein 1
publication title Ufd1 Exhibits the AAA-ATPase Fold with Two Distinct Ubiquitin Interaction Sites
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 26
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2005-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03152 UFD1 Ubiquitin fusion degradation protein UFD1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.50 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1zc1A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 1zc1A02
5EPPA 1WLFA 3HU1A 5FTLA 4KDLA 5FTNA 3CF2A 2JV2A 5FTJA 5C18A 4KODA 2YUJA 1CR5A 4KLNA 5C1BA 3QQ7A 1CZ5A 5B6CA 1S3SA 5GLFA 5DYGA 4KDIA 1ZC1A 3TIWA 1QDNA 3QC8A 1CZ4A 1QCSA 3HU3A 2PJHB 3HU2A 5FTMA 1E32A 1R7RA 5DYIA 3QWZA 4RV0A 5FTKA 4KO8A 3QQ8A
chains in the Genus database with same CATH superfamily
2KI8A 1E18A 2MM2A 1N10A 3HU1A 2JIRA 2G6GA 3X2KA 2YU9A 4KDLA 1E61A 2GFAA 5C18A 3FPTA 4KODA 1SIWA 3PLXB 2EEOB 4FIBA 3GTQA 2KQAA 1FDOA 5EQJB 1UHEA 5H4UA 4AOKB 4CQNA 1I9GA 2PWYA 1E5VA 2V45A 3H0GA 5B6CA 2DMRA 2G5DA 5GLFA 4CRYG 3X2IA 4KDIA 2B63A 3X2PA 2BH0A 2PJJA 4AQ7A 1H0HA 1HD5A 3QC8A 5GLXA 3GTOA 1SMYD 4ENGA 1AW8B 2JA5A 3LGAA 2PJHB 1TWFA 5CD1A 4JJOA 3GTMA 2A68D 1WC2A 2Y0SA 3ML1A 1VC3B 1R7RA 2NYAA 5DYIA 1EU1A 1FDIA 1OA9A 3SUMA 1I50A 2MM0A 4UC4A 3X2LA 4DMRA 2AE0X 2VPWA 4AS1A 3CQZA 2PI8A 1WLFA 2JIPA 4JP6A 1R9TA 3LHDA 5FTLA 2JA7A 1R27A 4JS7A 2PMZA 3FPRA 1CR5A 2YVLA 1IW7D 2PNWA 3OUGA 2A6ED 5T5ID 1TWAA 1BW4A 2ENGA 2LW6A 1G8KA 1TWGA 3GTKA 1KQFA 4FFTA 4JCWA 1Y1VA 4AYBA 2E2IA 1UHDA 1I3QA 4ARIA 4ARCA 2JIOA 3HU3A 3SULA 3HU2A 3IR6A 5FTMA 3X2GA 1SFOA 3GTGA 2E7ZA 1E32A 3X2JA 3QWZA 4FG4A 3GTPA 2R92A 1Y5IA 2QQRA 3ZJTA 3FKIA 4KO8A 4FG2A 5T5MD 2Q1CX 2VUMA 3BQBA 1OGYA 1DMRA 1PT1A 2GF7A 2E2HA 5D6WA 1G8JA 2Q18X 2NVXA 3ENGA 2A6HD 2B25A 3HKZA 5FTJA 2IV2X 3SUJA 2R93A 1BW3A 2YUJA 4NOHA 3IR7A 3X2NA 3ZJVA 3SUKA 1CZ5A 2Q1AX 4JP7A 2PICA 1S3SA 1PYQA 1O54A 4AONB 5D6YA 4CRZA 3TIWA 4GA6A 1AA6A 1PQEA 1Q16A 1ZYRD 1CZ4A 2CW0D 2O5JD 4FERA 4C2MA 2R7ZA 4QIWA 2VPXA 4RV0A 5FTKA 1DMSA 5D6XA 4D7ZB 1PQHA 2JA6A 5EPPA 3ZGZA 1Y4ZA 5ERGB 1PYUB 5GM9A 1PT0A 1Y1WA 5FTNA 3CF2A 2JV2A 1TMOA 2Q19X 3D30A 2QQSA 5C1BA 2XDPA 4KLNA 2A69D 3QQ7A 1YNND 3O5AA 2BE5D 3TM7B 3X2HA 4CS0A 4ZM7A 3M3GA 2KY9A 2WB1A 4GA5A 3GTJA 2V3VA 2NVYA 3GTLA 2WAQA 3DMRA 3FPUA 3X2OA 1TWCA 2VPYA 4L48A 4AVRA 3IR5A 5DYGA 1ZC1A 4AZDA 5GLYA 1K83A 1PPYA 1E60A 1YNJD 1QDNA 1QCSA 2JIQA 1L8FA 1H5NA 1YLEA 2C45A 2JIMA 2VPZA 5CCXA 2GAEA 1KQGA 2HCZX 4AAYA 1WCMA 3MB5A 3CZBA 1PQFA 1OA7A 2NAPA 3X2MA 2Q1DX 5CCBA 3ZJUA 1TWHA 3QQ8A
chains in the Genus database with same CATH topology
2KI8A 1E18A 2MM2A 3HU1A 2JIRA 2G6GA 2YU9A 4KDLA 1E61A 2GFAA 5C18A 3FPTA 4KODA 1SIWA 3PLXB 2EEOB 4FIBA 3GTQA 1FDOA 5EQJB 1UHEA 4CQNA 4AOKB 1I9GA 2PWYA 1E5VA 2V45A 3H0GA 5B6CA 2DMRA 2G5DA 5GLFA 4CRYG 4KDIA 2B63A 2PJJA 4AQ7A 1H0HA 3QC8A 5D6XA 2JA5A 3GTOA 1SMYD 1AW8B 3LGAA 5CD1A 2PJHB 1TWFA 3GTMA 2A68D 3ML1A 2Y0SA 1VC3B 1R7RA 2NYAA 5DYIA 1EU1A 1FDIA 1I50A 2MM0A 4UC4A 4DMRA 2AE0X 2VPWA 4AS1A 3CQZA 2PI8A 1WLFA 2JIPA 1R9TA 3LHDA 5FTLA 2JA7A 1R27A 3FPRA 2PMZA 1CR5A 2YVLA 1IW7D 2PNWA 3OUGA 2A6ED 5T5ID 1TWAA 2LW6A 1G8KA 1TWGA 3GTKA 1KQFA 1Y1VA 4AYBA 2E2IA 1UHDA 1I3QA 4ARIA 4ARCA 2JIOA 3HU3A 3HU2A 3IR6A 5FTMA 1SFOA 3GTGA 2E7ZA 1E32A 3QWZA 3GTPA 2R92A 2QQRA 1Y5IA 3ZJTA 3FKIA 4KO8A 5T5MD 2Q1CX 3BQBA 2VUMA 1OGYA 1DMRA 1PT1A 2GF7A 2E2HA 5D6WA 1G8JA 2Q18X 2NVXA 2A6HD 2B25A 3HKZA 5FTJA 2IV2X 2R93A 2YUJA 4NOHA 3IR7A 3ZJVA 1CZ5A 2Q1AX 2PICA 1S3SA 1PYQA 1O54A 4AONB 5D6YA 4CRZA 3TIWA 4GA6A 1AA6A 1PQEA 1Q16A 1ZYRD 1CZ4A 2CW0D 2O5JD 4C2MA 2R7ZA 4QIWA 2VPXA 4RV0A 5FTKA 1DMSA 4D7ZB 1PQHA 2JA6A 5EPPA 3ZGZA 1Y4ZA 5ERGB 1PYUB 1Y1WA 1PT0A 5FTNA 3CF2A 2JV2A 1TMOA 2Q19X 2QQSA 5C1BA 2XDPA 4KLNA 2A69D 3QQ7A 1YNND 3O5AA 2BE5D 3TM7B 4CS0A 2KY9A 2WB1A 4GA5A 3GTJA 2V3VA 2NVYA 3GTLA 2WAQA 3DMRA 3FPUA 1TWCA 2VPYA 4AZDA 3IR5A 5DYGA 1ZC1A 1K83A 1PPYA 1E60A 1YNJD 2JIQA 1QDNA 1QCSA 2C45A 1H5NA 1YLEA 2JIMA 2VPZA 5CCXA 2GAEA 1KQGA 4AAYA 1WCMA 3MB5A 3CZBA 1PQFA 5CCBA 2NAPA 2Q1DX 3ZJUA 1TWHA 3QQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EPP A;  1WLF A;  3HU1 A;  5FTL A;  4KDL A;  5FTN A;  3CF2 A;  2JV2 A;  5FTJ A;  5C18 A;  4KOD A;  2YUJ A;  1CR5 A;  4KLN A;  5C1B A;  3QQ7 A;  1CZ5 A;  5B6C A;  1S3S A;  5GLF A;  5DYG A;  4KDI A;  1ZC1 A;  3TIW A;  1QDN A;  3QC8 A;  1CZ4 A;  1QCS A;  3HU3 A;  2PJH B;  3HU2 A;  5FTM A;  1E32 A;  1R7R A;  5DYI A;  3QWZ A;  4RV0 A;  5FTK A;  4KO8 A;  3QQ8 A; 
#chains in the Genus database with same CATH topology
 2KI8 A;  1E18 A;  2MM2 A;  1N10 A;  3HU1 A;  2JIR A;  2G6G A;  3X2K A;  2YU9 A;  4KDL A;  1E61 A;  2GFA A;  5C18 A;  3FPT A;  4KOD A;  1SIW A;  3PLX B;  2EEO B;  4FIB A;  3GTQ A;  2KQA A;  1FDO A;  5EQJ B;  1UHE A;  5H4U A;  4AOK B;  4CQN A;  1I9G A;  2PWY A;  1E5V A;  2V45 A;  3H0G A;  5B6C A;  2DMR A;  2G5D A;  5GLF A;  4CRY G;  3X2I A;  4KDI A;  2B63 A;  3X2P A;  2BH0 A;  2PJJ A;  4AQ7 A;  1H0H A;  1HD5 A;  3QC8 A;  5GLX A;  3GTO A;  1SMY D;  4ENG A;  1AW8 B;  2JA5 A;  3LGA A;  2PJH B;  1TWF A;  5CD1 A;  4JJO A;  3GTM A;  2A68 D;  1WC2 A;  2Y0S A;  3ML1 A;  1VC3 B;  1R7R A;  2NYA A;  5DYI A;  1EU1 A;  1FDI A;  1OA9 A;  3SUM A;  1I50 A;  2MM0 A;  4UC4 A;  3X2L A;  4DMR A;  2AE0 X;  2VPW A;  4AS1 A;  3CQZ A;  2PI8 A;  1WLF A;  2JIP A;  4JP6 A;  1R9T A;  3LHD A;  5FTL A;  2JA7 A;  1R27 A;  4JS7 A;  2PMZ A;  3FPR A;  1CR5 A;  2YVL A;  1IW7 D;  2PNW A;  3OUG A;  2A6E D;  5T5I D;  1TWA A;  1BW4 A;  2ENG A;  2LW6 A;  1G8K A;  1TWG A;  3GTK A;  1KQF A;  4FFT A;  4JCW A;  1Y1V A;  4AYB A;  2E2I A;  1UHD A;  1I3Q A;  4ARI A;  4ARC A;  2JIO A;  3HU3 A;  3SUL A;  3HU2 A;  3IR6 A;  5FTM A;  3X2G A;  1SFO A;  3GTG A;  2E7Z A;  1E32 A;  3X2J A;  3QWZ A;  4FG4 A;  3GTP A;  2R92 A;  1Y5I A;  2QQR A;  3ZJT A;  3FKI A;  4KO8 A;  4FG2 A;  5T5M D;  2Q1C X;  2VUM A;  3BQB A;  1OGY A;  1DMR A;  1PT1 A;  2GF7 A;  2E2H A;  5D6W A;  1G8J A;  2Q18 X;  2NVX A;  3ENG A;  2A6H D;  2B25 A;  3HKZ A;  5FTJ A;  2IV2 X;  3SUJ A;  2R93 A;  1BW3 A;  2YUJ A;  4NOH A;  3IR7 A;  3X2N A;  3ZJV A;  3SUK A;  1CZ5 A;  2Q1A X;  4JP7 A;  2PIC A;  1S3S A;  1PYQ A;  1O54 A;  4AON B;  5D6Y A;  4CRZ A;  3TIW A;  4GA6 A;  1AA6 A;  1PQE A;  1Q16 A;  1ZYR D;  1CZ4 A;  2CW0 D;  2O5J D;  4FER A;  4C2M A;  2R7Z A;  4QIW A;  2VPX A;  4RV0 A;  5FTK A;  1DMS A;  5D6X A;  4D7Z B;  1PQH A;  2JA6 A;  5EPP A;  3ZGZ A;  1Y4Z A;  5ERG B;  1PYU B;  5GM9 A;  1PT0 A;  1Y1W A;  5FTN A;  3CF2 A;  2JV2 A;  1TMO A;  2Q19 X;  3D30 A;  2QQS A;  5C1B A;  2XDP A;  4KLN A;  2A69 D;  3QQ7 A;  1YNN D;  3O5A A;  2BE5 D;  3TM7 B;  3X2H A;  4CS0 A;  4ZM7 A;  3M3G A;  2KY9 A;  2WB1 A;  4GA5 A;  3GTJ A;  2V3V A;  2NVY A;  3GTL A;  2WAQ A;  3DMR A;  3FPU A;  3X2O A;  1TWC A;  2VPY A;  4L48 A;  4AVR A;  3IR5 A;  5DYG A;  1ZC1 A;  4AZD A;  5GLY A;  1K83 A;  1PPY A;  1E60 A;  1YNJ D;  1QDN A;  1QCS A;  2JIQ A;  1L8F A;  1H5N A;  1YLE A;  2C45 A;  2JIM A;  2VPZ A;  5CCX A;  2GAE A;  1KQG A;  2HCZ X;  4AAY A;  1WCM A;  3MB5 A;  3CZB A;  1PQF A;  1OA7 A;  2NAP A;  3X2M A;  2Q1D X;  5CCB A;  3ZJU A;  1TWH A;  3QQ8 A; 
#chains in the Genus database with same CATH homology
 2KI8 A;  1E18 A;  2MM2 A;  3HU1 A;  2JIR A;  2G6G A;  2YU9 A;  4KDL A;  1E61 A;  2GFA A;  5C18 A;  3FPT A;  4KOD A;  1SIW A;  3PLX B;  2EEO B;  4FIB A;  3GTQ A;  1FDO A;  5EQJ B;  1UHE A;  4CQN A;  4AOK B;  1I9G A;  2PWY A;  1E5V A;  2V45 A;  3H0G A;  5B6C A;  2DMR A;  2G5D A;  5GLF A;  4CRY G;  4KDI A;  2B63 A;  2PJJ A;  4AQ7 A;  1H0H A;  3QC8 A;  5D6X A;  2JA5 A;  3GTO A;  1SMY D;  1AW8 B;  3LGA A;  5CD1 A;  2PJH B;  1TWF A;  3GTM A;  2A68 D;  3ML1 A;  2Y0S A;  1VC3 B;  1R7R A;  2NYA A;  5DYI A;  1EU1 A;  1FDI A;  1I50 A;  2MM0 A;  4UC4 A;  4DMR A;  2AE0 X;  2VPW A;  4AS1 A;  3CQZ A;  2PI8 A;  1WLF A;  2JIP A;  1R9T A;  3LHD A;  5FTL A;  2JA7 A;  1R27 A;  3FPR A;  2PMZ A;  1CR5 A;  2YVL A;  1IW7 D;  2PNW A;  3OUG A;  2A6E D;  5T5I D;  1TWA A;  2LW6 A;  1G8K A;  1TWG A;  3GTK A;  1KQF A;  1Y1V A;  4AYB A;  2E2I A;  1UHD A;  1I3Q A;  4ARI A;  4ARC A;  2JIO A;  3HU3 A;  3HU2 A;  3IR6 A;  5FTM A;  1SFO A;  3GTG A;  2E7Z A;  1E32 A;  3QWZ A;  3GTP A;  2R92 A;  2QQR A;  1Y5I A;  3ZJT A;  3FKI A;  4KO8 A;  5T5M D;  2Q1C X;  3BQB A;  2VUM A;  1OGY A;  1DMR A;  1PT1 A;  2GF7 A;  2E2H A;  5D6W A;  1G8J A;  2Q18 X;  2NVX A;  2A6H D;  2B25 A;  3HKZ A;  5FTJ A;  2IV2 X;  2R93 A;  2YUJ A;  4NOH A;  3IR7 A;  3ZJV A;  1CZ5 A;  2Q1A X;  2PIC A;  1S3S A;  1PYQ A;  1O54 A;  4AON B;  5D6Y A;  4CRZ A;  3TIW A;  4GA6 A;  1AA6 A;  1PQE A;  1Q16 A;  1ZYR D;  1CZ4 A;  2CW0 D;  2O5J D;  4C2M A;  2R7Z A;  4QIW A;  2VPX A;  4RV0 A;  5FTK A;  1DMS A;  4D7Z B;  1PQH A;  2JA6 A;  5EPP A;  3ZGZ A;  1Y4Z A;  5ERG B;  1PYU B;  1Y1W A;  1PT0 A;  5FTN A;  3CF2 A;  2JV2 A;  1TMO A;  2Q19 X;  2QQS A;  5C1B A;  2XDP A;  4KLN A;  2A69 D;  3QQ7 A;  1YNN D;  3O5A A;  2BE5 D;  3TM7 B;  4CS0 A;  2KY9 A;  2WB1 A;  4GA5 A;  3GTJ A;  2V3V A;  2NVY A;  3GTL A;  2WAQ A;  3DMR A;  3FPU A;  1TWC A;  2VPY A;  4AZD A;  3IR5 A;  5DYG A;  1ZC1 A;  1K83 A;  1PPY A;  1E60 A;  1YNJ D;  2JIQ A;  1QDN A;  1QCS A;  2C45 A;  1H5N A;  1YLE A;  2JIM A;  2VPZ A;  5CCX A;  2GAE A;  1KQG A;  4AAY A;  1WCM A;  3MB5 A;  3CZB A;  1PQF A;  5CCB A;  2NAP A;  2Q1D X;  3ZJU A;  1TWH A;  3QQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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