2PJHB

Strctural model of the p97 n domain- npl4 ubd complex
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
193
structure length
193
Chain Sequence
NRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Nuclear protein localization protein 4 homolog
publication title Detailed structural insights into the p97-Npl4-Ufd1 interface.
pubmed doi rcsb
source organism Mus musculus
total genus 46
structure length 193
sequence length 193
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2007-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
B PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2pjhB01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2pjhB02
2JV2A 2R93A 5B6CA 5FTNA 2V45A 3QQ8A 2JIPA 3CF2A 4QIWA 1PQHA 3FKIA 2DMRA 1E32A 2JA6A 2NAPA 4AZDA 3O5AA 2E2IA 1CZ5A 1DMRA 1E61A 2C45A 1ZC1A 4D7ZB 2JIQA 2YUJA 3TM7B 3PLXB 4C2MA 1WLFA 5FTJA 1G8JA 3HU3A 5DYGA 5T5ID 3TIWA 1QDNA 1TMOA 1S3SA 1H0HA 3IR7A 1FDIA 1KQGA 2Y0SA 2V3VA 2PJHB 1Q16A 1PQFA 4GA6A 5DYIA 5GLFA 1WCMA 2VPZA 1I3QA 2JA7A 1UHDA 2EEOB 5EPPA 3QQ7A 3HU2A 1PYQA 3GTOA 4AAYA 3DMRA 2B63A 1I50A 2JIMA 1DMSA 1UHEA 1Y5IA 4AOKB 2WB1A 3IR6A 4GA5A 1KQFA 2JA5A 1Y4ZA 1R9TA 3QWZA 4KLNA 3GTPA 1VC3B 1E60A 1Y1WA 3GTKA 2JIOA 2E7ZA 3GTLA 1PT0A 3QC8A 3GTMA 2VPXA 1TWHA 1R7RA 2VPYA 1EU1A 1TWGA 3H0GA 5T5MD 2R92A 1TWAA 1PPYA 1TWCA 1QCSA 1E5VA 4RV0A 1IW7D 2IV2X 2NVYA 3GTGA 1SIWA 1R27A 3HKZA 1PYUB 3ML1A 3CQZA 3IR5A 2PMZA 4KDLA 3OUGA 2JIRA 3GTQA 4CS0A 4KDIA 1YLEA 2NVXA 1Y1VA 5C1BA 4DMRA 1G8KA 5FTKA 5FTLA 1K83A 4KO8A 5C18A 4KODA 2VPWA 4CRYG 5FTMA 1FDOA 2VUMA 1TWFA 1AA6A 2R7ZA 1OGYA 1PT1A 2E2HA 2WAQA 3HU1A 1E18A 1SFOA 2KI8A 4AONB 2YU9A 4CRZA 1AW8B 3GTJA 1CR5A 1H5NA 1PQEA 2NYAA 4AYBA 1CZ4A
chains in the Genus database with same CATH superfamily
2MM2A 1N10A 2JV2A 2R93A 5B6CA 5FTNA 1I9GA 4UC4A 5D6WA 2V45A 4AVRA 1HD5A 3QQ8A 4JP7A 3SUJA 2JIPA 5EQJB 3X2GA 1O54A 2MM0A 3CF2A 2CW0D 5ERGB 5H4UA 5GM9A 4QIWA 1PQHA 3FKIA 3X2OA 2DMRA 4L48A 3X2IA 3ENGA 1E32A 3MB5A 2JA6A 3SULA 2G6GA 3BQBA 2NAPA 4AZDA 3O5AA 3X2PA 2E2IA 1CZ5A 4AQ7A 1DMRA 2GF7A 2QQSA 1E61A 1ZC1A 2C45A 2YUJA 2JIQA 4FFTA 2A6ED 3PLXB 3TM7B 4D7ZB 1WLFA 4C2MA 5FTJA 4FIBA 1G8JA 3HU3A 5DYGA 5T5ID 4FG2A 3TIWA 1QDNA 1TMOA 2PNWA 1S3SA 2Q1CX 1H0HA 3IR7A 1YNJD 1FDIA 2A6HD 3FPRA 1KQGA 2Y0SA 2V3VA 2PJHB 1Q16A 1PQFA 1SMYD 4GA6A 4JJOA 5DYIA 1WCMA 5GLFA 4FG4A 1OA9A 2VPZA 1I3QA 2JA7A 4AS1A 2PICA 1UHDA 2EEOB 5EPPA 3X2MA 3QQ7A 3HU2A 1PYQA 3GTOA 1BW3A 4AAYA 3DMRA 2B63A 2PWYA 1I50A 2KQAA 2JIMA 1DMSA 1UHEA 2KY9A 1OA7A 1Y5IA 4JP6A 4AOKB 2WB1A 2GAEA 4JCWA 3IR6A 4GA5A 1KQFA 2JA5A 1Y4ZA 1R9TA 3QWZA 4KLNA 3SUKA 1VC3B 1E60A 3GTPA 1Y1WA 3GTKA 3ZJUA 3ZJTA 2JIOA 2E7ZA 3GTLA 1PT0A 3X2LA 4FERA 4NOHA 3QC8A 5D6YA 2PI8A 3M3GA 3GTMA 2XDPA 2VPXA 1TWHA 1R7RA 2VPYA 1EU1A 5CCBA 1TWGA 3CZBA 5D6XA 3SUMA 3H0GA 5T5MD 2R92A 1TWAA 4ARCA 1PPYA 1TWCA 1QCSA 1E5VA 4RV0A 1IW7D 2ENGA 2PJJA 5GLXA 2BH0A 2IV2X 5GLYA 2HCZX 2G5DA 2NVYA 3GTGA 1SIWA 1R27A 1ZYRD 3HKZA 1PYUB 3ML1A 3CQZA 3IR5A 2PMZA 2B25A 3FPUA 2LW6A 4KDLA 3D30A 3LGAA 3OUGA 3X2KA 2JIRA 3GTQA 4CS0A 1BW4A 2Q1DX 4KDIA 1YLEA 3X2NA 2NVXA 2Q19X 1Y1VA 5C1BA 1YNND 4DMRA 1G8KA 5FTKA 5FTLA 1K83A 4KO8A 5C18A 2O5JD 4KODA 3LHDA 2VPWA 4ENGA 3ZJVA 4CRYG 2A69D 5FTMA 1FDOA 3X2JA 1TWFA 2VUMA 1AA6A 1L8FA 2R7ZA 2YVLA 1OGYA 3X2HA 5CD1A 1PT1A 4ZM7A 2E2HA 2WAQA 3HU1A 4JS7A 3FPTA 2BE5D 4ARIA 1E18A 1SFOA 1WC2A 2GFAA 2KI8A 2QQRA 4AONB 4CQNA 2YU9A 5CCXA 3ZGZA 4CRZA 2Q1AX 1AW8B 3GTJA 2Q18X 1CR5A 1H5NA 1PQEA 2NYAA 2AE0X 4AYBA 2A68D 1CZ4A
chains in the Genus database with same CATH topology
2MM2A 2JV2A 2R93A 5B6CA 5FTNA 1I9GA 4UC4A 5D6WA 2V45A 3QQ8A 2JIPA 5EQJB 1O54A 2MM0A 3CF2A 2CW0D 5ERGB 4QIWA 1PQHA 3FKIA 2DMRA 1E32A 3MB5A 2JA6A 2G6GA 3BQBA 2NAPA 4AZDA 3O5AA 2E2IA 1CZ5A 4AQ7A 1DMRA 2GF7A 2QQSA 1E61A 1ZC1A 2C45A 2YUJA 2JIQA 4D7ZB 2A6ED 3PLXB 3TM7B 4C2MA 1WLFA 4FIBA 5FTJA 1G8JA 3HU3A 5DYGA 5T5ID 3TIWA 1QDNA 1TMOA 2PNWA 1S3SA 2Q1CX 1H0HA 3IR7A 1YNJD 1FDIA 2A6HD 3FPRA 1KQGA 2Y0SA 2V3VA 2PJHB 1Q16A 1PQFA 1SMYD 4GA6A 5DYIA 5GLFA 1WCMA 2VPZA 1I3QA 2JA7A 4AS1A 2PICA 1UHDA 2EEOB 5EPPA 3QQ7A 3HU2A 1PYQA 3GTOA 4AAYA 3DMRA 2B63A 2PWYA 1I50A 2JIMA 1DMSA 1UHEA 2KY9A 1Y5IA 4AOKB 2WB1A 2GAEA 3IR6A 4GA5A 1KQFA 2JA5A 1Y4ZA 1R9TA 3QWZA 4KLNA 3GTPA 1VC3B 1E60A 1Y1WA 3LHDA 3GTKA 3ZJUA 3ZJTA 2JIOA 2E7ZA 3GTLA 1PT0A 4NOHA 3QC8A 5D6YA 2PI8A 3GTMA 2XDPA 2VPXA 1TWHA 1R7RA 2VPYA 1EU1A 5CCBA 1TWGA 3CZBA 5D6XA 3H0GA 5T5MD 2R92A 1TWAA 4ARCA 1PPYA 1TWCA 1QCSA 1E5VA 4RV0A 1IW7D 2PJJA 2IV2X 2G5DA 2NVYA 3GTGA 1SIWA 1R27A 1ZYRD 3HKZA 1PYUB 3ML1A 3CQZA 3IR5A 2PMZA 2B25A 3FPUA 2LW6A 4KDLA 3LGAA 3OUGA 2JIRA 3GTQA 4CS0A 2Q1DX 4KDIA 1YLEA 2NVXA 2Q19X 1Y1VA 5C1BA 1YNND 4DMRA 1G8KA 5FTKA 5FTLA 1K83A 4KO8A 5C18A 2O5JD 4KODA 2VPWA 3ZJVA 4CRYG 2A69D 5FTMA 1FDOA 2VUMA 1TWFA 2YVLA 1AA6A 2R7ZA 1OGYA 5CD1A 1PT1A 2E2HA 2WAQA 3HU1A 3FPTA 2BE5D 4ARIA 1E18A 1SFOA 2GFAA 2KI8A 2QQRA 4AONB 4CQNA 2YU9A 5CCXA 3ZGZA 4CRZA 2Q1AX 1AW8B 3GTJA 2Q18X 1CR5A 1H5NA 1PQEA 2NYAA 2AE0X 4AYBA 2A68D 1CZ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JV2 A;  2R93 A;  5B6C A;  5FTN A;  2V45 A;  3QQ8 A;  2JIP A;  3CF2 A;  4QIW A;  1PQH A;  3FKI A;  2DMR A;  1E32 A;  2JA6 A;  2NAP A;  4AZD A;  3O5A A;  2E2I A;  1CZ5 A;  1DMR A;  1E61 A;  2C45 A;  1ZC1 A;  4D7Z B;  2JIQ A;  2YUJ A;  3TM7 B;  3PLX B;  4C2M A;  1WLF A;  5FTJ A;  1G8J A;  3HU3 A;  5DYG A;  5T5I D;  3TIW A;  1QDN A;  1TMO A;  1S3S A;  1H0H A;  3IR7 A;  1FDI A;  1KQG A;  2Y0S A;  2V3V A;  2PJH B;  1Q16 A;  1PQF A;  4GA6 A;  5DYI A;  5GLF A;  1WCM A;  2VPZ A;  1I3Q A;  2JA7 A;  1UHD A;  2EEO B;  5EPP A;  3QQ7 A;  3HU2 A;  1PYQ A;  3GTO A;  4AAY A;  3DMR A;  2B63 A;  1I50 A;  2JIM A;  1DMS A;  1UHE A;  1Y5I A;  4AOK B;  2WB1 A;  3IR6 A;  4GA5 A;  1KQF A;  2JA5 A;  1Y4Z A;  1R9T A;  3QWZ A;  4KLN A;  3GTP A;  1VC3 B;  1E60 A;  1Y1W A;  3GTK A;  2JIO A;  2E7Z A;  3GTL A;  1PT0 A;  3QC8 A;  3GTM A;  2VPX A;  1TWH A;  1R7R A;  2VPY A;  1EU1 A;  1TWG A;  3H0G A;  5T5M D;  2R92 A;  1TWA A;  1PPY A;  1TWC A;  1QCS A;  1E5V A;  4RV0 A;  1IW7 D;  2IV2 X;  2NVY A;  3GTG A;  1SIW A;  1R27 A;  3HKZ A;  1PYU B;  3ML1 A;  3CQZ A;  3IR5 A;  2PMZ A;  4KDL A;  3OUG A;  2JIR A;  3GTQ A;  4CS0 A;  4KDI A;  1YLE A;  2NVX A;  1Y1V A;  5C1B A;  4DMR A;  1G8K A;  5FTK A;  5FTL A;  1K83 A;  4KO8 A;  5C18 A;  4KOD A;  2VPW A;  4CRY G;  5FTM A;  1FDO A;  2VUM A;  1TWF A;  1AA6 A;  2R7Z A;  1OGY A;  1PT1 A;  2E2H A;  2WAQ A;  3HU1 A;  1E18 A;  1SFO A;  2KI8 A;  4AON B;  2YU9 A;  4CRZ A;  1AW8 B;  3GTJ A;  1CR5 A;  1H5N A;  1PQE A;  2NYA A;  4AYB A;  1CZ4 A; 
#chains in the Genus database with same CATH topology
 2MM2 A;  1N10 A;  2JV2 A;  2R93 A;  5B6C A;  5FTN A;  1I9G A;  4UC4 A;  5D6W A;  2V45 A;  4AVR A;  1HD5 A;  3QQ8 A;  4JP7 A;  3SUJ A;  2JIP A;  5EQJ B;  3X2G A;  1O54 A;  2MM0 A;  3CF2 A;  2CW0 D;  5ERG B;  5H4U A;  5GM9 A;  4QIW A;  1PQH A;  3FKI A;  3X2O A;  2DMR A;  4L48 A;  3X2I A;  3ENG A;  1E32 A;  3MB5 A;  2JA6 A;  3SUL A;  2G6G A;  3BQB A;  2NAP A;  4AZD A;  3O5A A;  3X2P A;  2E2I A;  1CZ5 A;  4AQ7 A;  1DMR A;  2GF7 A;  2QQS A;  1E61 A;  1ZC1 A;  2C45 A;  2YUJ A;  2JIQ A;  4FFT A;  2A6E D;  3PLX B;  3TM7 B;  4D7Z B;  1WLF A;  4C2M A;  5FTJ A;  4FIB A;  1G8J A;  3HU3 A;  5DYG A;  5T5I D;  4FG2 A;  3TIW A;  1QDN A;  1TMO A;  2PNW A;  1S3S A;  2Q1C X;  1H0H A;  3IR7 A;  1YNJ D;  1FDI A;  2A6H D;  3FPR A;  1KQG A;  2Y0S A;  2V3V A;  2PJH B;  1Q16 A;  1PQF A;  1SMY D;  4GA6 A;  4JJO A;  5DYI A;  1WCM A;  5GLF A;  4FG4 A;  1OA9 A;  2VPZ A;  1I3Q A;  2JA7 A;  4AS1 A;  2PIC A;  1UHD A;  2EEO B;  5EPP A;  3X2M A;  3QQ7 A;  3HU2 A;  1PYQ A;  3GTO A;  1BW3 A;  4AAY A;  3DMR A;  2B63 A;  2PWY A;  1I50 A;  2KQA A;  2JIM A;  1DMS A;  1UHE A;  2KY9 A;  1OA7 A;  1Y5I A;  4JP6 A;  4AOK B;  2WB1 A;  2GAE A;  4JCW A;  3IR6 A;  4GA5 A;  1KQF A;  2JA5 A;  1Y4Z A;  1R9T A;  3QWZ A;  4KLN A;  3SUK A;  1VC3 B;  1E60 A;  3GTP A;  1Y1W A;  3GTK A;  3ZJU A;  3ZJT A;  2JIO A;  2E7Z A;  3GTL A;  1PT0 A;  3X2L A;  4FER A;  4NOH A;  3QC8 A;  5D6Y A;  2PI8 A;  3M3G A;  3GTM A;  2XDP A;  2VPX A;  1TWH A;  1R7R A;  2VPY A;  1EU1 A;  5CCB A;  1TWG A;  3CZB A;  5D6X A;  3SUM A;  3H0G A;  5T5M D;  2R92 A;  1TWA A;  4ARC A;  1PPY A;  1TWC A;  1QCS A;  1E5V A;  4RV0 A;  1IW7 D;  2ENG A;  2PJJ A;  5GLX A;  2BH0 A;  2IV2 X;  5GLY A;  2HCZ X;  2G5D A;  2NVY A;  3GTG A;  1SIW A;  1R27 A;  1ZYR D;  3HKZ A;  1PYU B;  3ML1 A;  3CQZ A;  3IR5 A;  2PMZ A;  2B25 A;  3FPU A;  2LW6 A;  4KDL A;  3D30 A;  3LGA A;  3OUG A;  3X2K A;  2JIR A;  3GTQ A;  4CS0 A;  1BW4 A;  2Q1D X;  4KDI A;  1YLE A;  3X2N A;  2NVX A;  2Q19 X;  1Y1V A;  5C1B A;  1YNN D;  4DMR A;  1G8K A;  5FTK A;  5FTL A;  1K83 A;  4KO8 A;  5C18 A;  2O5J D;  4KOD A;  3LHD A;  2VPW A;  4ENG A;  3ZJV A;  4CRY G;  2A69 D;  5FTM A;  1FDO A;  3X2J A;  1TWF A;  2VUM A;  1AA6 A;  1L8F A;  2R7Z A;  2YVL A;  1OGY A;  3X2H A;  5CD1 A;  1PT1 A;  4ZM7 A;  2E2H A;  2WAQ A;  3HU1 A;  4JS7 A;  3FPT A;  2BE5 D;  4ARI A;  1E18 A;  1SFO A;  1WC2 A;  2GFA A;  2KI8 A;  2QQR A;  4AON B;  4CQN A;  2YU9 A;  5CCX A;  3ZGZ A;  4CRZ A;  2Q1A X;  1AW8 B;  3GTJ A;  2Q18 X;  1CR5 A;  1H5N A;  1PQE A;  2NYA A;  2AE0 X;  4AYB A;  2A68 D;  1CZ4 A; 
#chains in the Genus database with same CATH homology
 2MM2 A;  2JV2 A;  2R93 A;  5B6C A;  5FTN A;  1I9G A;  4UC4 A;  5D6W A;  2V45 A;  3QQ8 A;  2JIP A;  5EQJ B;  1O54 A;  2MM0 A;  3CF2 A;  2CW0 D;  5ERG B;  4QIW A;  1PQH A;  3FKI A;  2DMR A;  1E32 A;  3MB5 A;  2JA6 A;  2G6G A;  3BQB A;  2NAP A;  4AZD A;  3O5A A;  2E2I A;  1CZ5 A;  4AQ7 A;  1DMR A;  2GF7 A;  2QQS A;  1E61 A;  1ZC1 A;  2C45 A;  2YUJ A;  2JIQ A;  4D7Z B;  2A6E D;  3PLX B;  3TM7 B;  4C2M A;  1WLF A;  4FIB A;  5FTJ A;  1G8J A;  3HU3 A;  5DYG A;  5T5I D;  3TIW A;  1QDN A;  1TMO A;  2PNW A;  1S3S A;  2Q1C X;  1H0H A;  3IR7 A;  1YNJ D;  1FDI A;  2A6H D;  3FPR A;  1KQG A;  2Y0S A;  2V3V A;  2PJH B;  1Q16 A;  1PQF A;  1SMY D;  4GA6 A;  5DYI A;  5GLF A;  1WCM A;  2VPZ A;  1I3Q A;  2JA7 A;  4AS1 A;  2PIC A;  1UHD A;  2EEO B;  5EPP A;  3QQ7 A;  3HU2 A;  1PYQ A;  3GTO A;  4AAY A;  3DMR A;  2B63 A;  2PWY A;  1I50 A;  2JIM A;  1DMS A;  1UHE A;  2KY9 A;  1Y5I A;  4AOK B;  2WB1 A;  2GAE A;  3IR6 A;  4GA5 A;  1KQF A;  2JA5 A;  1Y4Z A;  1R9T A;  3QWZ A;  4KLN A;  3GTP A;  1VC3 B;  1E60 A;  1Y1W A;  3LHD A;  3GTK A;  3ZJU A;  3ZJT A;  2JIO A;  2E7Z A;  3GTL A;  1PT0 A;  4NOH A;  3QC8 A;  5D6Y A;  2PI8 A;  3GTM A;  2XDP A;  2VPX A;  1TWH A;  1R7R A;  2VPY A;  1EU1 A;  5CCB A;  1TWG A;  3CZB A;  5D6X A;  3H0G A;  5T5M D;  2R92 A;  1TWA A;  4ARC A;  1PPY A;  1TWC A;  1QCS A;  1E5V A;  4RV0 A;  1IW7 D;  2PJJ A;  2IV2 X;  2G5D A;  2NVY A;  3GTG A;  1SIW A;  1R27 A;  1ZYR D;  3HKZ A;  1PYU B;  3ML1 A;  3CQZ A;  3IR5 A;  2PMZ A;  2B25 A;  3FPU A;  2LW6 A;  4KDL A;  3LGA A;  3OUG A;  2JIR A;  3GTQ A;  4CS0 A;  2Q1D X;  4KDI A;  1YLE A;  2NVX A;  2Q19 X;  1Y1V A;  5C1B A;  1YNN D;  4DMR A;  1G8K A;  5FTK A;  5FTL A;  1K83 A;  4KO8 A;  5C18 A;  2O5J D;  4KOD A;  2VPW A;  3ZJV A;  4CRY G;  2A69 D;  5FTM A;  1FDO A;  2VUM A;  1TWF A;  2YVL A;  1AA6 A;  2R7Z A;  1OGY A;  5CD1 A;  1PT1 A;  2E2H A;  2WAQ A;  3HU1 A;  3FPT A;  2BE5 D;  4ARI A;  1E18 A;  1SFO A;  2GFA A;  2KI8 A;  2QQR A;  4AON B;  4CQN A;  2YU9 A;  5CCX A;  3ZGZ A;  4CRZ A;  2Q1A X;  1AW8 B;  3GTJ A;  2Q18 X;  1CR5 A;  1H5N A;  1PQE A;  2NYA A;  2AE0 X;  4AYB A;  2A68 D;  1CZ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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