2PJHB

Strctural model of the p97 n domain- npl4 ubd complex
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
193
structure length
193
Chain Sequence
b'NRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nuclear protein localization protein 4 homolog
publication title Detailed structural insights into the p97-Npl4-Ufd1 interface.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transport protein
total genus 46
structure length 193
sequence length 193
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2007-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
B PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2pjhB01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2pjhB02
4GA6A 3IR6A 4KDIA 1H0HA 2YUJA 4KODA 1PT1A 1PQFA 3FKIA 1FDOA 2JIQA 1I50A 1CZ5A 3HU2A 1CR5A 2R7ZA 2WB1A 1ZC1A 2JIRA 3ML1A 3TIWA 1I3QA 2E2IA 1WLFA 1KQGA 2NAPA 1YLEA 2DMRA 1PQEA 1AW8B 1TMOA 3GTOA 3PLXB 2WAQA 1R9TA 3QC8A 5C1BA 1Y4ZA 1DMRA 3QWZA 3QQ7A 2JIOA 2Y0SA 3OUGA 5T5ID 1SFOA 2NVXA 1TWGA 3GTGA 4AZDA 2PJHB 1CZ4A 5DYIA 5FTNA 3GTLA 5C18A 1QCSA 3O5AA 4KDLA 2JA5A 3GTMA 2PMZA 2VPZA 4RV0A 4CRZA 5EPPA 2EEOB 2NYAA 4C2MA 1E18A 2E7ZA 3HU1A 4QIWA 1G8KA 3IR5A 1E32A 2B63A 2C45A 3HU3A 5FTMA 1TWFA 2JA7A 1R27A 2NVYA 3GTKA 1DMSA 1PYUB 3TM7B 4CRYG 1R7RA 2JIMA 1Y1WA 1E60A 1PPYA 4DMRA 1PYQA 1UHEA 3CQZA 1Q16A 2KI8A 1SIWA 1TWCA 1EU1A 5DYGA 2JV2A 1Y5IA 2VUMA 1Y1VA 2E2HA 2V45A 3CF2A 4AOKB 3GTPA 3QQ8A 2IV2X 2VPWA 1IW7D 2YU9A 3IR7A 1K83A 3GTQA 4CS0A 4KO8A 1E61A 1FDIA 3GTJA 1S3SA 1QDNA 2R93A 2VPYA 5FTKA 2R92A 5T5MD 1H5NA 4GA5A 1TWAA 4AONB 5FTLA 1KQFA 5GLFA 1PT0A 4KLNA 4AYBA 1TWHA 4D7ZB 1G8JA 2JIPA 3DMRA 3H0GA 4AAYA 1AA6A 1E5VA 1PQHA 5FTJA 1VC3B 2JA6A 1WCMA 1OGYA 5B6CA 1UHDA 2VPXA 3HKZA 2V3VA
chains in the Genus database with same CATH superfamily
4GA6A 3IR6A 4KDIA 1H0HA 4CQNA 2YUJA 4KODA 3X2MA 4UC4A 2GF7A 1PT1A 4NOHA 2Q18X 1PQFA 3FKIA 2MM0A 5CCBA 1FDOA 2O5JD 1I9GA 2CW0D 2JIQA 1I50A 1CZ5A 3HU2A 1CR5A 2A6ED 2R7ZA 3BQBA 2WB1A 2QQSA 1SMYD 1ZC1A 1ZYRD 2JIRA 3ML1A 3TIWA 1I3QA 2E2IA 3X2LA 1WLFA 4L48A 3SUJA 2GFAA 2KY9A 2Q1DX 2HCZX 1KQGA 4ZM7A 1OA9A 2NAPA 1BW3A 2PJJA 4AS1A 1YLEA 2DMRA 1PQEA 1AW8B 5EQJB 1TMOA 3ZJUA 3GTOA 3PLXB 2WAQA 1R9TA 3X2JA 3QC8A 5C1BA 1Y4ZA 1DMRA 3QWZA 4FFTA 3QQ7A 2JIOA 2Y0SA 3OUGA 3X2PA 2A69D 3ZJVA 2Q1AX 3SUKA 2BE5D 5T5ID 5ERGB 4AVRA 1SFOA 2NVXA 3ZGZA 3X2NA 1TWGA 3GTGA 1OA7A 4AZDA 2PJHB 1CZ4A 5DYIA 2PNWA 4JCWA 5FTNA 3GTLA 3LGAA 5C18A 5D6YA 1QCSA 3O5AA 1YNJD 4KDLA 2JA5A 3GTMA 4FG4A 2PMZA 2VPZA 4RV0A 4CRZA 3D30A 4JJOA 5EPPA 2EEOB 2NYAA 4C2MA 1E18A 3ZJTA 2E7ZA 5CD1A 4ENGA 3HU1A 4QIWA 1G8KA 3IR5A 1E32A 2A68D 2B63A 2C45A 3HU3A 5FTMA 1TWFA 2AE0X 1HD5A 2LW6A 2JA7A 1R27A 4JP6A 3X2KA 3X2IA 2NVYA 3GTKA 1DMSA 1PYUB 2KQAA 5H4UA 3TM7B 4CRYG 1R7RA 2JIMA 3M3GA 4FERA 1Y1WA 2Q1CX 4FIBA 5D6XA 4JP7A 1E60A 1PPYA 2G5DA 4DMRA 4ARCA 1PYQA 1UHEA 3CQZA 1Q16A 2KI8A 1SIWA 1O54A 1TWCA 2QQRA 3CZBA 2A6HD 1EU1A 5DYGA 1N10A 3SUMA 2JV2A 1Y5IA 2VUMA 1YNND 1Y1VA 2ENGA 2E2HA 5GM9A 2B25A 4AQ7A 5GLYA 1BW4A 2V45A 3CF2A 4AOKB 2BH0A 3GTPA 3QQ8A 2IV2X 2VPWA 1IW7D 2YVLA 3FPUA 1WC2A 3IR7A 1K83A 2YU9A 3X2HA 3GTQA 4JS7A 4CS0A 3SULA 2PWYA 4KO8A 5D6WA 1E61A 1FDIA 3GTJA 2XDPA 1S3SA 1QDNA 2R93A 3MB5A 3LHDA 2VPYA 5FTKA 2R92A 2PICA 3X2OA 5T5MD 1H5NA 4GA5A 2Q19X 1TWAA 2GAEA 2G6GA 4AONB 5FTLA 1KQFA 5GLFA 3X2GA 1PT0A 4KLNA 2MM2A 4AYBA 5CCXA 4FG2A 5GLXA 2PI8A 3FPTA 1TWHA 4D7ZB 3FPRA 1G8JA 2JIPA 3DMRA 3H0GA 4AAYA 1AA6A 1E5VA 1PQHA 5FTJA 1VC3B 2JA6A 1WCMA 1OGYA 5B6CA 4ARIA 1L8FA 1UHDA 3ENGA 2VPXA 3HKZA 2V3VA
chains in the Genus database with same CATH topology
4GA6A 3IR6A 4KDIA 1H0HA 4CQNA 2YUJA 4KODA 4UC4A 2GF7A 1PT1A 4NOHA 2Q18X 1PQFA 3FKIA 2MM0A 5CCBA 1FDOA 2O5JD 1I9GA 2CW0D 2JIQA 1I50A 1CZ5A 3HU2A 1CR5A 2A6ED 2R7ZA 3BQBA 2WB1A 2QQSA 1SMYD 1ZC1A 1ZYRD 2JIRA 3ML1A 3TIWA 1I3QA 2E2IA 2GFAA 1WLFA 2KY9A 2Q1DX 1KQGA 2NAPA 4AS1A 2PJJA 1YLEA 2DMRA 1PQEA 1AW8B 5EQJB 1TMOA 3ZJUA 3GTOA 3PLXB 2WAQA 1R9TA 3QC8A 5C1BA 1Y4ZA 1DMRA 3QWZA 3QQ7A 2JIOA 2Y0SA 3OUGA 2A69D 3ZJVA 2Q1AX 2BE5D 5T5ID 5ERGB 1SFOA 2NVXA 3ZGZA 1TWGA 3GTGA 4AZDA 2PJHB 1CZ4A 5DYIA 2PNWA 5FTNA 3GTLA 3LGAA 5C18A 5D6YA 1QCSA 3O5AA 1YNJD 4KDLA 2JA5A 3GTMA 2PMZA 2VPZA 4RV0A 4CRZA 5EPPA 2EEOB 2NYAA 4C2MA 1E18A 3ZJTA 2E7ZA 5CD1A 3HU1A 4QIWA 1G8KA 3IR5A 1E32A 2A68D 2B63A 2C45A 3HU3A 5FTMA 1TWFA 2AE0X 2LW6A 2JA7A 1R27A 2NVYA 3GTKA 1DMSA 1PYUB 3TM7B 4CRYG 1R7RA 2JIMA 1Y1WA 2Q1CX 4FIBA 5D6XA 1E60A 1PPYA 2G5DA 4DMRA 4ARCA 1PYQA 1UHEA 3CQZA 1Q16A 2KI8A 1SIWA 1O54A 1TWCA 2QQRA 3CZBA 2A6HD 1EU1A 5DYGA 2JV2A 1Y5IA 2VUMA 1YNND 1Y1VA 2B25A 2E2HA 4AQ7A 2V45A 3CF2A 4AOKB 3GTPA 3QQ8A 2IV2X 2VPWA 1IW7D 2YVLA 3FPUA 2YU9A 3IR7A 1K83A 3GTQA 4CS0A 2PWYA 4KO8A 5D6WA 1E61A 1FDIA 3GTJA 2XDPA 1S3SA 1QDNA 2R93A 3MB5A 3LHDA 2VPYA 5FTKA 2R92A 2PICA 5T5MD 1H5NA 4GA5A 2Q19X 1TWAA 2GAEA 2G6GA 4AONB 5FTLA 1KQFA 5GLFA 1PT0A 4KLNA 2MM2A 4AYBA 5CCXA 3FPTA 2PI8A 1TWHA 4D7ZB 3FPRA 1G8JA 2JIPA 3DMRA 3H0GA 4AAYA 1AA6A 1E5VA 1PQHA 5FTJA 1VC3B 2JA6A 1WCMA 1OGYA 5B6CA 4ARIA 1UHDA 2VPXA 3HKZA 2V3VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GA6 A;  3IR6 A;  4KDI A;  1H0H A;  2YUJ A;  4KOD A;  1PT1 A;  1PQF A;  3FKI A;  1FDO A;  2JIQ A;  1I50 A;  1CZ5 A;  3HU2 A;  1CR5 A;  2R7Z A;  2WB1 A;  1ZC1 A;  2JIR A;  3ML1 A;  3TIW A;  1I3Q A;  2E2I A;  1WLF A;  1KQG A;  2NAP A;  1YLE A;  2DMR A;  1PQE A;  1AW8 B;  1TMO A;  3GTO A;  3PLX B;  2WAQ A;  1R9T A;  3QC8 A;  5C1B A;  1Y4Z A;  1DMR A;  3QWZ A;  3QQ7 A;  2JIO A;  2Y0S A;  3OUG A;  5T5I D;  1SFO A;  2NVX A;  1TWG A;  3GTG A;  4AZD A;  2PJH B;  1CZ4 A;  5DYI A;  5FTN A;  3GTL A;  5C18 A;  1QCS A;  3O5A A;  4KDL A;  2JA5 A;  3GTM A;  2PMZ A;  2VPZ A;  4RV0 A;  4CRZ A;  5EPP A;  2EEO B;  2NYA A;  4C2M A;  1E18 A;  2E7Z A;  3HU1 A;  4QIW A;  1G8K A;  3IR5 A;  1E32 A;  2B63 A;  2C45 A;  3HU3 A;  5FTM A;  1TWF A;  2JA7 A;  1R27 A;  2NVY A;  3GTK A;  1DMS A;  1PYU B;  3TM7 B;  4CRY G;  1R7R A;  2JIM A;  1Y1W A;  1E60 A;  1PPY A;  4DMR A;  1PYQ A;  1UHE A;  3CQZ A;  1Q16 A;  2KI8 A;  1SIW A;  1TWC A;  1EU1 A;  5DYG A;  2JV2 A;  1Y5I A;  2VUM A;  1Y1V A;  2E2H A;  2V45 A;  3CF2 A;  4AOK B;  3GTP A;  3QQ8 A;  2IV2 X;  2VPW A;  1IW7 D;  2YU9 A;  3IR7 A;  1K83 A;  3GTQ A;  4CS0 A;  4KO8 A;  1E61 A;  1FDI A;  3GTJ A;  1S3S A;  1QDN A;  2R93 A;  2VPY A;  5FTK A;  2R92 A;  5T5M D;  1H5N A;  4GA5 A;  1TWA A;  4AON B;  5FTL A;  1KQF A;  5GLF A;  1PT0 A;  4KLN A;  4AYB A;  1TWH A;  4D7Z B;  1G8J A;  2JIP A;  3DMR A;  3H0G A;  4AAY A;  1AA6 A;  1E5V A;  1PQH A;  5FTJ A;  1VC3 B;  2JA6 A;  1WCM A;  1OGY A;  5B6C A;  1UHD A;  2VPX A;  3HKZ A;  2V3V A; 
#chains in the Genus database with same CATH topology
 4GA6 A;  3IR6 A;  4KDI A;  1H0H A;  4CQN A;  2YUJ A;  4KOD A;  3X2M A;  4UC4 A;  2GF7 A;  1PT1 A;  4NOH A;  2Q18 X;  1PQF A;  3FKI A;  2MM0 A;  5CCB A;  1FDO A;  2O5J D;  1I9G A;  2CW0 D;  2JIQ A;  1I50 A;  1CZ5 A;  3HU2 A;  1CR5 A;  2A6E D;  2R7Z A;  3BQB A;  2WB1 A;  2QQS A;  1SMY D;  1ZC1 A;  1ZYR D;  2JIR A;  3ML1 A;  3TIW A;  1I3Q A;  2E2I A;  3X2L A;  1WLF A;  4L48 A;  3SUJ A;  2GFA A;  2KY9 A;  2Q1D X;  2HCZ X;  1KQG A;  4ZM7 A;  1OA9 A;  2NAP A;  1BW3 A;  2PJJ A;  4AS1 A;  1YLE A;  2DMR A;  1PQE A;  1AW8 B;  5EQJ B;  1TMO A;  3ZJU A;  3GTO A;  3PLX B;  2WAQ A;  1R9T A;  3X2J A;  3QC8 A;  5C1B A;  1Y4Z A;  1DMR A;  3QWZ A;  4FFT A;  3QQ7 A;  2JIO A;  2Y0S A;  3OUG A;  3X2P A;  2A69 D;  3ZJV A;  2Q1A X;  3SUK A;  2BE5 D;  5T5I D;  5ERG B;  4AVR A;  1SFO A;  2NVX A;  3ZGZ A;  3X2N A;  1TWG A;  3GTG A;  1OA7 A;  4AZD A;  2PJH B;  1CZ4 A;  5DYI A;  2PNW A;  4JCW A;  5FTN A;  3GTL A;  3LGA A;  5C18 A;  5D6Y A;  1QCS A;  3O5A A;  1YNJ D;  4KDL A;  2JA5 A;  3GTM A;  4FG4 A;  2PMZ A;  2VPZ A;  4RV0 A;  4CRZ A;  3D30 A;  4JJO A;  5EPP A;  2EEO B;  2NYA A;  4C2M A;  1E18 A;  3ZJT A;  2E7Z A;  5CD1 A;  4ENG A;  3HU1 A;  4QIW A;  1G8K A;  3IR5 A;  1E32 A;  2A68 D;  2B63 A;  2C45 A;  3HU3 A;  5FTM A;  1TWF A;  2AE0 X;  1HD5 A;  2LW6 A;  2JA7 A;  1R27 A;  4JP6 A;  3X2K A;  3X2I A;  2NVY A;  3GTK A;  1DMS A;  1PYU B;  2KQA A;  5H4U A;  3TM7 B;  4CRY G;  1R7R A;  2JIM A;  3M3G A;  4FER A;  1Y1W A;  2Q1C X;  4FIB A;  5D6X A;  4JP7 A;  1E60 A;  1PPY A;  2G5D A;  4DMR A;  4ARC A;  1PYQ A;  1UHE A;  3CQZ A;  1Q16 A;  2KI8 A;  1SIW A;  1O54 A;  1TWC A;  2QQR A;  3CZB A;  2A6H D;  1EU1 A;  5DYG A;  1N10 A;  3SUM A;  2JV2 A;  1Y5I A;  2VUM A;  1YNN D;  1Y1V A;  2ENG A;  2E2H A;  5GM9 A;  2B25 A;  4AQ7 A;  5GLY A;  1BW4 A;  2V45 A;  3CF2 A;  4AOK B;  2BH0 A;  3GTP A;  3QQ8 A;  2IV2 X;  2VPW A;  1IW7 D;  2YVL A;  3FPU A;  1WC2 A;  3IR7 A;  1K83 A;  2YU9 A;  3X2H A;  3GTQ A;  4JS7 A;  4CS0 A;  3SUL A;  2PWY A;  4KO8 A;  5D6W A;  1E61 A;  1FDI A;  3GTJ A;  2XDP A;  1S3S A;  1QDN A;  2R93 A;  3MB5 A;  3LHD A;  2VPY A;  5FTK A;  2R92 A;  2PIC A;  3X2O A;  5T5M D;  1H5N A;  4GA5 A;  2Q19 X;  1TWA A;  2GAE A;  2G6G A;  4AON B;  5FTL A;  1KQF A;  5GLF A;  3X2G A;  1PT0 A;  4KLN A;  2MM2 A;  4AYB A;  5CCX A;  4FG2 A;  5GLX A;  2PI8 A;  3FPT A;  1TWH A;  4D7Z B;  3FPR A;  1G8J A;  2JIP A;  3DMR A;  3H0G A;  4AAY A;  1AA6 A;  1E5V A;  1PQH A;  5FTJ A;  1VC3 B;  2JA6 A;  1WCM A;  1OGY A;  5B6C A;  4ARI A;  1L8F A;  1UHD A;  3ENG A;  2VPX A;  3HKZ A;  2V3V A; 
#chains in the Genus database with same CATH homology
 4GA6 A;  3IR6 A;  4KDI A;  1H0H A;  4CQN A;  2YUJ A;  4KOD A;  4UC4 A;  2GF7 A;  1PT1 A;  4NOH A;  2Q18 X;  1PQF A;  3FKI A;  2MM0 A;  5CCB A;  1FDO A;  2O5J D;  1I9G A;  2CW0 D;  2JIQ A;  1I50 A;  1CZ5 A;  3HU2 A;  1CR5 A;  2A6E D;  2R7Z A;  3BQB A;  2WB1 A;  2QQS A;  1SMY D;  1ZC1 A;  1ZYR D;  2JIR A;  3ML1 A;  3TIW A;  1I3Q A;  2E2I A;  2GFA A;  1WLF A;  2KY9 A;  2Q1D X;  1KQG A;  2NAP A;  4AS1 A;  2PJJ A;  1YLE A;  2DMR A;  1PQE A;  1AW8 B;  5EQJ B;  1TMO A;  3ZJU A;  3GTO A;  3PLX B;  2WAQ A;  1R9T A;  3QC8 A;  5C1B A;  1Y4Z A;  1DMR A;  3QWZ A;  3QQ7 A;  2JIO A;  2Y0S A;  3OUG A;  2A69 D;  3ZJV A;  2Q1A X;  2BE5 D;  5T5I D;  5ERG B;  1SFO A;  2NVX A;  3ZGZ A;  1TWG A;  3GTG A;  4AZD A;  2PJH B;  1CZ4 A;  5DYI A;  2PNW A;  5FTN A;  3GTL A;  3LGA A;  5C18 A;  5D6Y A;  1QCS A;  3O5A A;  1YNJ D;  4KDL A;  2JA5 A;  3GTM A;  2PMZ A;  2VPZ A;  4RV0 A;  4CRZ A;  5EPP A;  2EEO B;  2NYA A;  4C2M A;  1E18 A;  3ZJT A;  2E7Z A;  5CD1 A;  3HU1 A;  4QIW A;  1G8K A;  3IR5 A;  1E32 A;  2A68 D;  2B63 A;  2C45 A;  3HU3 A;  5FTM A;  1TWF A;  2AE0 X;  2LW6 A;  2JA7 A;  1R27 A;  2NVY A;  3GTK A;  1DMS A;  1PYU B;  3TM7 B;  4CRY G;  1R7R A;  2JIM A;  1Y1W A;  2Q1C X;  4FIB A;  5D6X A;  1E60 A;  1PPY A;  2G5D A;  4DMR A;  4ARC A;  1PYQ A;  1UHE A;  3CQZ A;  1Q16 A;  2KI8 A;  1SIW A;  1O54 A;  1TWC A;  2QQR A;  3CZB A;  2A6H D;  1EU1 A;  5DYG A;  2JV2 A;  1Y5I A;  2VUM A;  1YNN D;  1Y1V A;  2B25 A;  2E2H A;  4AQ7 A;  2V45 A;  3CF2 A;  4AOK B;  3GTP A;  3QQ8 A;  2IV2 X;  2VPW A;  1IW7 D;  2YVL A;  3FPU A;  2YU9 A;  3IR7 A;  1K83 A;  3GTQ A;  4CS0 A;  2PWY A;  4KO8 A;  5D6W A;  1E61 A;  1FDI A;  3GTJ A;  2XDP A;  1S3S A;  1QDN A;  2R93 A;  3MB5 A;  3LHD A;  2VPY A;  5FTK A;  2R92 A;  2PIC A;  5T5M D;  1H5N A;  4GA5 A;  2Q19 X;  1TWA A;  2GAE A;  2G6G A;  4AON B;  5FTL A;  1KQF A;  5GLF A;  1PT0 A;  4KLN A;  2MM2 A;  4AYB A;  5CCX A;  3FPT A;  2PI8 A;  1TWH A;  4D7Z B;  3FPR A;  1G8J A;  2JIP A;  3DMR A;  3H0G A;  4AAY A;  1AA6 A;  1E5V A;  1PQH A;  5FTJ A;  1VC3 B;  2JA6 A;  1WCM A;  1OGY A;  5B6C A;  4ARI A;  1UHD A;  2VPX A;  3HKZ A;  2V3V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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