2PJHB

Strctural model of the p97 n domain- npl4 ubd complex
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
193
structure length
193
Chain Sequence
NRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nuclear protein localization protein 4 homolog
publication title Detailed structural insights into the p97-Npl4-Ufd1 interface.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transport protein
total genus 46
structure length 193
sequence length 193
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2007-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
B PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2pjhB01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2pjhB02
3CQZA 2V45A 3HU2A 1FDOA 1DMSA 1G8JA 3HU1A 3O5AA 3GTJA 2B63A 2R93A 1WCMA 2YU9A 1H0HA 1DMRA 3DMRA 2JIPA 1PYQA 2JV2A 1CZ4A 1QDNA 1FDIA 1QCSA 2VUMA 3HKZA 1OGYA 1CR5A 1PT0A 3GTLA 1Y1VA 4DMRA 4KDIA 1WLFA 3CF2A 5B6CA 1UHDA 5FTMA 4AOKB 2PMZA 5DYIA 4CRYG 4AONB 1Y4ZA 2NVYA 1TWGA 4KDLA 2VPYA 5DYGA 3GTOA 2DMRA 1PQHA 3TM7B 2VPWA 1YLEA 5FTLA 3QQ7A 2PJHB 1SFOA 1K83A 3ML1A 1I3QA 1R9TA 5FTNA 2NAPA 1Y1WA 2JIRA 4KLNA 1Q16A 3GTPA 2R7ZA 2IV2X 2Y0SA 5EPPA 1VC3B 2R92A 2VPXA 1Y5IA 5T5ID 1ZC1A 4GA5A 1E5VA 1KQFA 1IW7D 4AAYA 1H5NA 1E18A 1PPYA 3GTMA 1TWHA 4D7ZB 2VPZA 3H0GA 1PQFA 3IR7A 2JA6A 1AA6A 2C45A 3GTGA 1UHEA 5FTJA 1EU1A 4C2MA 1KQGA 4AYBA 3TIWA 2E2IA 3IR5A 4RV0A 1E32A 1TWFA 3IR6A 5C1BA 1SIWA 4CRZA 1CZ5A 1AW8B 2JIMA 4QIWA 1I50A 3GTKA 4KO8A 1E60A 2JIOA 5T5MD 2V3VA 4KODA 1TMOA 3FKIA 5GLFA 4AZDA 2NVXA 2JA5A 2JIQA 3GTQA 2NYAA 3HU3A 3QWZA 1E61A 1PT1A 1PQEA 1S3SA 3QC8A 1R27A 4GA6A 2YUJA 5C18A 2KI8A 2EEOB 2WB1A 5FTKA 1G8KA 2JA7A 3QQ8A 4CS0A 3OUGA 2E7ZA 1PYUB 1TWAA 2WAQA 2E2HA 1R7RA 3PLXB 1TWCA
chains in the Genus database with same CATH superfamily
3MB5A 2BH0A 2V45A 3CQZA 1FDOA 1DMSA 1G8JA 3HU1A 3HU2A 3O5AA 1N10A 3GTJA 2LW6A 2B63A 2R93A 5EQJB 1WCMA 2YU9A 1H0HA 1DMRA 3DMRA 2JIPA 1PYQA 2JV2A 1CZ4A 1QDNA 1FDIA 2PJJA 3ENGA 1QCSA 2VUMA 3FPTA 3HKZA 1OGYA 1CR5A 1PT0A 3GTLA 1Y1VA 2BE5D 4DMRA 4KDIA 1WLFA 3CF2A 5B6CA 1UHDA 3LHDA 2Q19X 4FIBA 1OA7A 4UC4A 2KQAA 5FTMA 4AOKB 5GM9A 2PMZA 5DYIA 4CRYG 2PWYA 3SUJA 4AONB 2Q18X 1Y4ZA 2NVYA 1OA9A 4FG2A 3SUKA 1TWGA 2PNWA 2Q1AX 5GLYA 2YVLA 3FPUA 2AE0X 4ARCA 4KDLA 2VPYA 5DYGA 3GTOA 2DMRA 1PQHA 2A6HD 3TM7B 1YLEA 2VPWA 3BQBA 3ZJVA 4AVRA 5FTLA 3QQ7A 3LGAA 2PJHB 3X2OA 1SFOA 1K83A 5ERGB 3ML1A 2QQRA 2GF7A 3X2HA 3ZGZA 1I3QA 1R9TA 3SULA 1HD5A 1ZYRD 3X2PA 4FG4A 1SMYD 5D6XA 5FTNA 2NAPA 1Y1WA 2JIRA 4JP6A 4KLNA 3X2KA 1Q16A 3GTPA 2R7ZA 2IV2X 2QQSA 2CW0D 2Y0SA 4CQNA 5GLXA 5EPPA 1VC3B 2G5DA 4ENGA 2R92A 3X2NA 2VPXA 2A69D 1Y5IA 5T5ID 1ZC1A 4GA5A 2Q1CX 2GFAA 1E5VA 2PICA 1IW7D 1KQFA 3ZJTA 4AAYA 1H5NA 3SUMA 1I9GA 2MM2A 1E18A 1PPYA 3X2JA 3GTMA 1TWHA 4D7ZB 4JCWA 2VPZA 5H4UA 3H0GA 4AS1A 1PQFA 3IR7A 2JA6A 2MM0A 1AA6A 2C45A 3GTGA 1O54A 1UHEA 2HCZX 5FTJA 1EU1A 4C2MA 1KQGA 4AYBA 3TIWA 2E2IA 4AQ7A 3IR5A 4RV0A 3X2GA 1E32A 1TWFA 3IR6A 5C1BA 5CCXA 4JJOA 1SIWA 3CZBA 4CRZA 4JS7A 1BW4A 2PI8A 1CZ5A 1AW8B 2JIMA 2B25A 4QIWA 2GAEA 1I50A 3X2LA 3GTKA 4KO8A 1E60A 2JIOA 4FERA 5T5MD 2V3VA 4KODA 1TMOA 3FKIA 5GLFA 3M3GA 3X2MA 4AZDA 2NVXA 2JA5A 1WC2A 2JIQA 3GTQA 3X2IA 2NYAA 2XDPA 4ZM7A 3D30A 3HU3A 3QWZA 4FFTA 5D6WA 1BW3A 1E61A 4ARIA 1PT1A 1PQEA 1L8FA 1S3SA 3QC8A 1R27A 1YNJD 4GA6A 2YUJA 3FPRA 5C18A 5D6YA 2KI8A 2EEOB 2WB1A 2O5JD 5FTKA 1G8KA 2ENGA 2JA7A 5CD1A 3QQ8A 3ZJUA 4L48A 4CS0A 1R7RA 2E7ZA 3OUGA 1PYUB 1TWAA 4JP7A 4NOHA 2A68D 2WAQA 1YNND 2Q1DX 5CCBA 2G6GA 2KY9A 2E2HA 2A6ED 3PLXB 1TWCA
chains in the Genus database with same CATH topology
3MB5A 3CQZA 2V45A 3HU2A 1FDOA 1DMSA 1G8JA 3HU1A 3O5AA 3GTJA 2LW6A 2B63A 2R93A 5EQJB 1WCMA 2YU9A 1H0HA 1DMRA 3DMRA 2JIPA 1PYQA 2JV2A 1CZ4A 1QDNA 1FDIA 2PJJA 1QCSA 2VUMA 3FPTA 3HKZA 1OGYA 1CR5A 1PT0A 3GTLA 1Y1VA 2BE5D 4DMRA 4KDIA 1WLFA 3CF2A 5B6CA 1UHDA 3LHDA 2Q19X 4FIBA 4UC4A 5FTMA 4AOKB 2PMZA 5DYIA 4CRYG 2PWYA 4AONB 2Q18X 1Y4ZA 2NVYA 2YVLA 2Q1AX 1TWGA 2PNWA 3FPUA 4ARCA 2AE0X 4KDLA 2VPYA 5DYGA 3GTOA 2DMRA 1PQHA 2A6HD 3TM7B 1YLEA 2VPWA 3BQBA 3ZJVA 5FTLA 3QQ7A 3LGAA 2PJHB 1SFOA 1K83A 5ERGB 3ML1A 2QQRA 2GF7A 3ZGZA 1I3QA 1R9TA 1ZYRD 5D6XA 1SMYD 5FTNA 2NAPA 1Y1WA 2JIRA 4KLNA 1Q16A 3GTPA 2R7ZA 2IV2X 2QQSA 2CW0D 2Y0SA 4CQNA 5EPPA 1VC3B 2G5DA 2R92A 2VPXA 2A69D 1Y5IA 5T5ID 1ZC1A 4GA5A 2Q1CX 2GFAA 1E5VA 2PICA 1IW7D 1KQFA 3ZJTA 4AAYA 1H5NA 1I9GA 2MM2A 1E18A 1PPYA 3GTMA 1TWHA 4D7ZB 4AS1A 2VPZA 3H0GA 1PQFA 3IR7A 2JA6A 2MM0A 1AA6A 2C45A 3GTGA 1O54A 1UHEA 5FTJA 1EU1A 4C2MA 1KQGA 4AYBA 3TIWA 2E2IA 4AQ7A 3IR5A 4RV0A 1E32A 1TWFA 3IR6A 5C1BA 5CCXA 1SIWA 3CZBA 4CRZA 1CZ5A 2PI8A 1AW8B 2JIMA 2B25A 4QIWA 2GAEA 1I50A 3GTKA 4KO8A 1E60A 2JIOA 5T5MD 2V3VA 4KODA 1TMOA 3FKIA 5GLFA 4AZDA 2NVXA 2JA5A 2JIQA 3GTQA 2NYAA 2XDPA 3HU3A 3QWZA 5D6WA 1E61A 4ARIA 1PT1A 1PQEA 1S3SA 3QC8A 1R27A 1YNJD 4GA6A 2YUJA 3FPRA 5C18A 5D6YA 2KI8A 2EEOB 2WB1A 2O5JD 5FTKA 1G8KA 2JA7A 5CD1A 3QQ8A 3ZJUA 4CS0A 1R7RA 2E7ZA 3OUGA 1PYUB 1TWAA 4NOHA 2A68D 2WAQA 1YNND 2Q1DX 5CCBA 2G6GA 2KY9A 2E2HA 2A6ED 3PLXB 1TWCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CQZ A;  2V45 A;  3HU2 A;  1FDO A;  1DMS A;  1G8J A;  3HU1 A;  3O5A A;  3GTJ A;  2B63 A;  2R93 A;  1WCM A;  2YU9 A;  1H0H A;  1DMR A;  3DMR A;  2JIP A;  1PYQ A;  2JV2 A;  1CZ4 A;  1QDN A;  1FDI A;  1QCS A;  2VUM A;  3HKZ A;  1OGY A;  1CR5 A;  1PT0 A;  3GTL A;  1Y1V A;  4DMR A;  4KDI A;  1WLF A;  3CF2 A;  5B6C A;  1UHD A;  5FTM A;  4AOK B;  2PMZ A;  5DYI A;  4CRY G;  4AON B;  1Y4Z A;  2NVY A;  1TWG A;  4KDL A;  2VPY A;  5DYG A;  3GTO A;  2DMR A;  1PQH A;  3TM7 B;  2VPW A;  1YLE A;  5FTL A;  3QQ7 A;  2PJH B;  1SFO A;  1K83 A;  3ML1 A;  1I3Q A;  1R9T A;  5FTN A;  2NAP A;  1Y1W A;  2JIR A;  4KLN A;  1Q16 A;  3GTP A;  2R7Z A;  2IV2 X;  2Y0S A;  5EPP A;  1VC3 B;  2R92 A;  2VPX A;  1Y5I A;  5T5I D;  1ZC1 A;  4GA5 A;  1E5V A;  1KQF A;  1IW7 D;  4AAY A;  1H5N A;  1E18 A;  1PPY A;  3GTM A;  1TWH A;  4D7Z B;  2VPZ A;  3H0G A;  1PQF A;  3IR7 A;  2JA6 A;  1AA6 A;  2C45 A;  3GTG A;  1UHE A;  5FTJ A;  1EU1 A;  4C2M A;  1KQG A;  4AYB A;  3TIW A;  2E2I A;  3IR5 A;  4RV0 A;  1E32 A;  1TWF A;  3IR6 A;  5C1B A;  1SIW A;  4CRZ A;  1CZ5 A;  1AW8 B;  2JIM A;  4QIW A;  1I50 A;  3GTK A;  4KO8 A;  1E60 A;  2JIO A;  5T5M D;  2V3V A;  4KOD A;  1TMO A;  3FKI A;  5GLF A;  4AZD A;  2NVX A;  2JA5 A;  2JIQ A;  3GTQ A;  2NYA A;  3HU3 A;  3QWZ A;  1E61 A;  1PT1 A;  1PQE A;  1S3S A;  3QC8 A;  1R27 A;  4GA6 A;  2YUJ A;  5C18 A;  2KI8 A;  2EEO B;  2WB1 A;  5FTK A;  1G8K A;  2JA7 A;  3QQ8 A;  4CS0 A;  3OUG A;  2E7Z A;  1PYU B;  1TWA A;  2WAQ A;  2E2H A;  1R7R A;  3PLX B;  1TWC A; 
#chains in the Genus database with same CATH topology
 3MB5 A;  2BH0 A;  2V45 A;  3CQZ A;  1FDO A;  1DMS A;  1G8J A;  3HU1 A;  3HU2 A;  3O5A A;  1N10 A;  3GTJ A;  2LW6 A;  2B63 A;  2R93 A;  5EQJ B;  1WCM A;  2YU9 A;  1H0H A;  1DMR A;  3DMR A;  2JIP A;  1PYQ A;  2JV2 A;  1CZ4 A;  1QDN A;  1FDI A;  2PJJ A;  3ENG A;  1QCS A;  2VUM A;  3FPT A;  3HKZ A;  1OGY A;  1CR5 A;  1PT0 A;  3GTL A;  1Y1V A;  2BE5 D;  4DMR A;  4KDI A;  1WLF A;  3CF2 A;  5B6C A;  1UHD A;  3LHD A;  2Q19 X;  4FIB A;  1OA7 A;  4UC4 A;  2KQA A;  5FTM A;  4AOK B;  5GM9 A;  2PMZ A;  5DYI A;  4CRY G;  2PWY A;  3SUJ A;  4AON B;  2Q18 X;  1Y4Z A;  2NVY A;  1OA9 A;  4FG2 A;  3SUK A;  1TWG A;  2PNW A;  2Q1A X;  5GLY A;  2YVL A;  3FPU A;  2AE0 X;  4ARC A;  4KDL A;  2VPY A;  5DYG A;  3GTO A;  2DMR A;  1PQH A;  2A6H D;  3TM7 B;  1YLE A;  2VPW A;  3BQB A;  3ZJV A;  4AVR A;  5FTL A;  3QQ7 A;  3LGA A;  2PJH B;  3X2O A;  1SFO A;  1K83 A;  5ERG B;  3ML1 A;  2QQR A;  2GF7 A;  3X2H A;  3ZGZ A;  1I3Q A;  1R9T A;  3SUL A;  1HD5 A;  1ZYR D;  3X2P A;  4FG4 A;  1SMY D;  5D6X A;  5FTN A;  2NAP A;  1Y1W A;  2JIR A;  4JP6 A;  4KLN A;  3X2K A;  1Q16 A;  3GTP A;  2R7Z A;  2IV2 X;  2QQS A;  2CW0 D;  2Y0S A;  4CQN A;  5GLX A;  5EPP A;  1VC3 B;  2G5D A;  4ENG A;  2R92 A;  3X2N A;  2VPX A;  2A69 D;  1Y5I A;  5T5I D;  1ZC1 A;  4GA5 A;  2Q1C X;  2GFA A;  1E5V A;  2PIC A;  1IW7 D;  1KQF A;  3ZJT A;  4AAY A;  1H5N A;  3SUM A;  1I9G A;  2MM2 A;  1E18 A;  1PPY A;  3X2J A;  3GTM A;  1TWH A;  4D7Z B;  4JCW A;  2VPZ A;  5H4U A;  3H0G A;  4AS1 A;  1PQF A;  3IR7 A;  2JA6 A;  2MM0 A;  1AA6 A;  2C45 A;  3GTG A;  1O54 A;  1UHE A;  2HCZ X;  5FTJ A;  1EU1 A;  4C2M A;  1KQG A;  4AYB A;  3TIW A;  2E2I A;  4AQ7 A;  3IR5 A;  4RV0 A;  3X2G A;  1E32 A;  1TWF A;  3IR6 A;  5C1B A;  5CCX A;  4JJO A;  1SIW A;  3CZB A;  4CRZ A;  4JS7 A;  1BW4 A;  2PI8 A;  1CZ5 A;  1AW8 B;  2JIM A;  2B25 A;  4QIW A;  2GAE A;  1I50 A;  3X2L A;  3GTK A;  4KO8 A;  1E60 A;  2JIO A;  4FER A;  5T5M D;  2V3V A;  4KOD A;  1TMO A;  3FKI A;  5GLF A;  3M3G A;  3X2M A;  4AZD A;  2NVX A;  2JA5 A;  1WC2 A;  2JIQ A;  3GTQ A;  3X2I A;  2NYA A;  2XDP A;  4ZM7 A;  3D30 A;  3HU3 A;  3QWZ A;  4FFT A;  5D6W A;  1BW3 A;  1E61 A;  4ARI A;  1PT1 A;  1PQE A;  1L8F A;  1S3S A;  3QC8 A;  1R27 A;  1YNJ D;  4GA6 A;  2YUJ A;  3FPR A;  5C18 A;  5D6Y A;  2KI8 A;  2EEO B;  2WB1 A;  2O5J D;  5FTK A;  1G8K A;  2ENG A;  2JA7 A;  5CD1 A;  3QQ8 A;  3ZJU A;  4L48 A;  4CS0 A;  1R7R A;  2E7Z A;  3OUG A;  1PYU B;  1TWA A;  4JP7 A;  4NOH A;  2A68 D;  2WAQ A;  1YNN D;  2Q1D X;  5CCB A;  2G6G A;  2KY9 A;  2E2H A;  2A6E D;  3PLX B;  1TWC A; 
#chains in the Genus database with same CATH homology
 3MB5 A;  3CQZ A;  2V45 A;  3HU2 A;  1FDO A;  1DMS A;  1G8J A;  3HU1 A;  3O5A A;  3GTJ A;  2LW6 A;  2B63 A;  2R93 A;  5EQJ B;  1WCM A;  2YU9 A;  1H0H A;  1DMR A;  3DMR A;  2JIP A;  1PYQ A;  2JV2 A;  1CZ4 A;  1QDN A;  1FDI A;  2PJJ A;  1QCS A;  2VUM A;  3FPT A;  3HKZ A;  1OGY A;  1CR5 A;  1PT0 A;  3GTL A;  1Y1V A;  2BE5 D;  4DMR A;  4KDI A;  1WLF A;  3CF2 A;  5B6C A;  1UHD A;  3LHD A;  2Q19 X;  4FIB A;  4UC4 A;  5FTM A;  4AOK B;  2PMZ A;  5DYI A;  4CRY G;  2PWY A;  4AON B;  2Q18 X;  1Y4Z A;  2NVY A;  2YVL A;  2Q1A X;  1TWG A;  2PNW A;  3FPU A;  4ARC A;  2AE0 X;  4KDL A;  2VPY A;  5DYG A;  3GTO A;  2DMR A;  1PQH A;  2A6H D;  3TM7 B;  1YLE A;  2VPW A;  3BQB A;  3ZJV A;  5FTL A;  3QQ7 A;  3LGA A;  2PJH B;  1SFO A;  1K83 A;  5ERG B;  3ML1 A;  2QQR A;  2GF7 A;  3ZGZ A;  1I3Q A;  1R9T A;  1ZYR D;  5D6X A;  1SMY D;  5FTN A;  2NAP A;  1Y1W A;  2JIR A;  4KLN A;  1Q16 A;  3GTP A;  2R7Z A;  2IV2 X;  2QQS A;  2CW0 D;  2Y0S A;  4CQN A;  5EPP A;  1VC3 B;  2G5D A;  2R92 A;  2VPX A;  2A69 D;  1Y5I A;  5T5I D;  1ZC1 A;  4GA5 A;  2Q1C X;  2GFA A;  1E5V A;  2PIC A;  1IW7 D;  1KQF A;  3ZJT A;  4AAY A;  1H5N A;  1I9G A;  2MM2 A;  1E18 A;  1PPY A;  3GTM A;  1TWH A;  4D7Z B;  4AS1 A;  2VPZ A;  3H0G A;  1PQF A;  3IR7 A;  2JA6 A;  2MM0 A;  1AA6 A;  2C45 A;  3GTG A;  1O54 A;  1UHE A;  5FTJ A;  1EU1 A;  4C2M A;  1KQG A;  4AYB A;  3TIW A;  2E2I A;  4AQ7 A;  3IR5 A;  4RV0 A;  1E32 A;  1TWF A;  3IR6 A;  5C1B A;  5CCX A;  1SIW A;  3CZB A;  4CRZ A;  1CZ5 A;  2PI8 A;  1AW8 B;  2JIM A;  2B25 A;  4QIW A;  2GAE A;  1I50 A;  3GTK A;  4KO8 A;  1E60 A;  2JIO A;  5T5M D;  2V3V A;  4KOD A;  1TMO A;  3FKI A;  5GLF A;  4AZD A;  2NVX A;  2JA5 A;  2JIQ A;  3GTQ A;  2NYA A;  2XDP A;  3HU3 A;  3QWZ A;  5D6W A;  1E61 A;  4ARI A;  1PT1 A;  1PQE A;  1S3S A;  3QC8 A;  1R27 A;  1YNJ D;  4GA6 A;  2YUJ A;  3FPR A;  5C18 A;  5D6Y A;  2KI8 A;  2EEO B;  2WB1 A;  2O5J D;  5FTK A;  1G8K A;  2JA7 A;  5CD1 A;  3QQ8 A;  3ZJU A;  4CS0 A;  1R7R A;  2E7Z A;  3OUG A;  1PYU B;  1TWA A;  4NOH A;  2A68 D;  2WAQ A;  1YNN D;  2Q1D X;  5CCB A;  2G6G A;  2KY9 A;  2E2H A;  2A6E D;  3PLX B;  1TWC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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