2PJHB

Strctural model of the p97 n domain- npl4 ubd complex
Total Genus 46
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
193
structure length
193
Chain Sequence
NRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Detailed structural insights into the p97-Npl4-Ufd1 interface.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transport protein
molecule keywords Nuclear protein localization protein 4 homolog
total genus 46
structure length 193
sequence length 193
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2007-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
B PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2pjhB01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2pjhB02
4GA6A 1R9TA 1OGYA 1SIWA 2DMRA 3GTPA 1CZ4A 1VC3B 4AAYA 3GTLA 4KDIA 3H0GA 1Y4ZA 2PJHB 1E32A 2R7ZA 1FDIA 1PQEA 3OUGA 1SFOA 2V3VA 1Q16A 1WCMA 1E60A 1PYQA 3HKZA 3HU2A 1EU1A 5FTJA 1G8JA 2VPWA 3PLXB 3GTGA 2VPXA 2JIRA 2NAPA 1H0HA 1S3SA 2JA6A 5T5MD 4AOKB 1H5NA 5FTNA 1TWGA 2E7ZA 2VPYA 1AA6A 1E61A 1QDNA 5C1BA 2R92A 3GTQA 4KLNA 1CR5A 2JIMA 4D7ZB 3QC8A 1IW7D 1DMRA 5FTLA 4C2MA 3TM7B 2C45A 1Y1WA 1ZC1A 5EPPA 1TWFA 3QWZA 4AZDA 4CRZA 2NVYA 3IR7A 1PT1A 1QCSA 5DYGA 3O5AA 1PPYA 4AYBA 2B63A 2WAQA 4CRYG 1DMSA 3GTOA 1CZ5A 1WLFA 1R7RA 2V45A 1PQHA 2YU9A 1PT0A 4KO8A 3GTMA 1PQFA 2WB1A 3GTKA 1E18A 2Y0SA 4GA5A 2R93A 4KODA 2JIQA 4CS0A 1AW8B 2IV2X 1I3QA 3IR5A 1K83A 2EEOB 2JA5A 2PMZA 1TWAA 3IR6A 1I50A 3QQ8A 3QQ7A 1Y5IA 4QIWA 5GLFA 1PYUB 5FTKA 4KDLA 5C18A 5B6CA 2JV2A 1Y1VA 4DMRA 2VUMA 3DMRA 1UHEA 3CQZA 4AONB 1KQGA 3GTJA 1UHDA 1TMOA 3FKIA 2E2IA 2E2HA 1E5VA 2JA7A 3HU3A 1TWCA 1G8KA 1TWHA 2NVXA 1KQFA 4RV0A 2JIPA 2YUJA 1YLEA 3CF2A 3HU1A 2VPZA 1FDOA 2KI8A 3ML1A 1R27A 5DYIA 3TIWA 5FTMA 5T5ID 2JIOA 2NYAA
chains in the Genus database with same CATH superfamily
2XDPA 3LGAA 4ENGA 3ZJVA 4FERA 4GA6A 1AA6A 1R9TA 2KY9A 4CQNA 1OGYA 3D30A 4JJOA 5D6XA 5ERGB 1SMYD 1SIWA 1ZYRD 2DMRA 3GTPA 1CZ4A 2G5DA 1VC3B 4FG2A 2KQAA 3X2PA 4AAYA 3GTLA 1OA9A 1OA7A 4KDIA 4FFTA 3ZGZA 3H0GA 1Y4ZA 2PJHB 1E32A 2R7ZA 1FDIA 1PQEA 3OUGA 1SFOA 2LW6A 3BQBA 2V3VA 1Q16A 1WCMA 2PICA 1E60A 1PYQA 4NOHA 3HKZA 3HU2A 1EU1A 5H4UA 1BW3A 5FTJA 1G8JA 2VPWA 1I9GA 3X2IA 3PLXB 3ENGA 1YNND 2HCZX 1HD5A 2BH0A 2VPXA 3SUKA 2JIRA 3GTGA 2NAPA 1H0HA 1BW4A 1S3SA 2Q19X 2JA6A 3X2JA 4JP7A 5T5MD 1H5NA 5FTNA 1TWGA 2E7ZA 2VPYA 4AOKB 1E61A 1QDNA 4FG4A 2A69D 3X2NA 2O5JD 5C1BA 2B25A 2GFAA 2PWYA 2R92A 3GTQA 4KLNA 2PNWA 5EQJB 4L48A 3X2KA 1CR5A 2JIMA 3ZJUA 4D7ZB 3QC8A 1IW7D 1DMRA 5FTLA 4C2MA 1ZC1A 2C45A 3TM7B 1Y1WA 2Q1DX 5CCXA 5EPPA 4JS7A 2AE0X 3SUMA 1TWFA 3QWZA 1L8FA 4AZDA 4CRZA 4AS1A 3ZJTA 3LHDA 2NVYA 3IR7A 1PT1A 1QCSA 3X2HA 5CCBA 5DYGA 2A6ED 3O5AA 5CD1A 1PPYA 4AYBA 2B63A 2WAQA 4CRYG 1DMSA 3GTOA 2MM2A 2A68D 1CZ5A 1WLFA 2PJJA 1R7RA 2V45A 2A6HD 1PQHA 2YU9A 5D6WA 1PT0A 4ZM7A 4KO8A 3X2LA 3GTMA 1PQFA 2QQSA 2WB1A 3GTKA 3X2OA 1E18A 1O54A 2Y0SA 4GA5A 2R93A 4KODA 3FPRA 2JIQA 3SULA 2CW0D 4CS0A 1AW8B 2IV2X 2Q1CX 4ARIA 1I3QA 2G6GA 3IR5A 2EEOB 1K83A 2JA5A 5GLYA 3FPTA 3MB5A 5D6YA 2PMZA 1TWAA 3IR6A 1I50A 3QQ8A 3QQ7A 1Y5IA 3M3GA 4QIWA 2ENGA 1PYUB 5GLFA 3X2GA 5FTKA 4KDLA 1WC2A 2Q18X 5C18A 2YVLA 5B6CA 2JV2A 1Y1VA 4DMRA 2Q1AX 4AVRA 2VUMA 3DMRA 1UHEA 3CQZA 2BE5D 3X2MA 4AONB 4JP6A 3SUJA 1UHDA 1KQGA 3GTJA 1TMOA 2QQRA 5GM9A 4ARCA 3FKIA 2E2IA 3FPUA 4JCWA 2GAEA 1E5VA 2E2HA 2JA7A 3HU3A 1N10A 1TWCA 1G8KA 1YNJD 1TWHA 3CZBA 2NVXA 1KQFA 2MM0A 2YUJA 2JIPA 4RV0A 1YLEA 3CF2A 3HU1A 4FIBA 4AQ7A 2VPZA 5GLXA 1FDOA 2KI8A 2GF7A 3ML1A 2PI8A 1R27A 5DYIA 4UC4A 3TIWA 5FTMA 5T5ID 2JIOA 2NYAA
chains in the Genus database with same CATH topology
2XDPA 3LGAA 3ZJVA 4GA6A 1R9TA 2KY9A 4CQNA 1OGYA 5D6XA 5ERGB 1SMYD 1SIWA 1ZYRD 2DMRA 3GTPA 1CZ4A 2G5DA 1VC3B 4AAYA 3GTLA 4KDIA 3ZGZA 3H0GA 1Y4ZA 2PJHB 1E32A 2R7ZA 1FDIA 1PQEA 3OUGA 1SFOA 2LW6A 3BQBA 2V3VA 1Q16A 2PICA 1WCMA 1E60A 1PYQA 4NOHA 3HKZA 3HU2A 1EU1A 5FTJA 1G8JA 2VPWA 1I9GA 3PLXB 1YNND 3GTGA 2VPXA 2JIRA 2NAPA 1H0HA 1S3SA 2Q19X 2JA6A 5T5MD 4AOKB 1H5NA 5FTNA 1TWGA 2E7ZA 2VPYA 1AA6A 1E61A 1QDNA 2A69D 2O5JD 5C1BA 2B25A 2GFAA 2PWYA 2R92A 3GTQA 4KLNA 2PNWA 5EQJB 1CR5A 2JIMA 3ZJUA 4D7ZB 3QC8A 1IW7D 1DMRA 5FTLA 4C2MA 1ZC1A 2C45A 3TM7B 1Y1WA 2Q1DX 5CCXA 5EPPA 2AE0X 1TWFA 3QWZA 4AZDA 4CRZA 4AS1A 3ZJTA 3LHDA 2NVYA 3IR7A 1PT1A 1QCSA 5CCBA 5DYGA 2A6ED 3O5AA 5CD1A 1PPYA 4AYBA 2B63A 2WAQA 4CRYG 1DMSA 3GTOA 2MM2A 2A68D 1CZ5A 1WLFA 2PJJA 1R7RA 2V45A 2A6HD 1PQHA 2YU9A 5D6WA 1PT0A 4KO8A 3GTMA 1PQFA 2QQSA 2WB1A 3GTKA 1E18A 1O54A 2Y0SA 4GA5A 2R93A 4KODA 3FPRA 2JIQA 2CW0D 4CS0A 1AW8B 2IV2X 2Q1CX 4ARIA 1I3QA 2G6GA 3IR5A 2EEOB 1K83A 2JA5A 3FPTA 3MB5A 5D6YA 2PMZA 1TWAA 3IR6A 1I50A 3QQ8A 3QQ7A 1Y5IA 4QIWA 5GLFA 1PYUB 5FTKA 4KDLA 2Q18X 5C18A 2YVLA 5B6CA 2JV2A 1Y1VA 4DMRA 2Q1AX 2VUMA 3DMRA 1UHEA 3CQZA 2BE5D 4AONB 1KQGA 3GTJA 1UHDA 2QQRA 1TMOA 4ARCA 3FKIA 2E2IA 3FPUA 2GAEA 1E5VA 2E2HA 2JA7A 3HU3A 1TWCA 1G8KA 1YNJD 1TWHA 3CZBA 2NVXA 1KQFA 2MM0A 2YUJA 2JIPA 4RV0A 1YLEA 3CF2A 3HU1A 4FIBA 4AQ7A 2VPZA 1FDOA 2KI8A 2GF7A 3ML1A 2PI8A 1R27A 5DYIA 4UC4A 3TIWA 5FTMA 5T5ID 2JIOA 2NYAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GA6 A;  1R9T A;  1OGY A;  1SIW A;  2DMR A;  3GTP A;  1CZ4 A;  1VC3 B;  4AAY A;  3GTL A;  4KDI A;  3H0G A;  1Y4Z A;  2PJH B;  1E32 A;  2R7Z A;  1FDI A;  1PQE A;  3OUG A;  1SFO A;  2V3V A;  1Q16 A;  1WCM A;  1E60 A;  1PYQ A;  3HKZ A;  3HU2 A;  1EU1 A;  5FTJ A;  1G8J A;  2VPW A;  3PLX B;  3GTG A;  2VPX A;  2JIR A;  2NAP A;  1H0H A;  1S3S A;  2JA6 A;  5T5M D;  4AOK B;  1H5N A;  5FTN A;  1TWG A;  2E7Z A;  2VPY A;  1AA6 A;  1E61 A;  1QDN A;  5C1B A;  2R92 A;  3GTQ A;  4KLN A;  1CR5 A;  2JIM A;  4D7Z B;  3QC8 A;  1IW7 D;  1DMR A;  5FTL A;  4C2M A;  3TM7 B;  2C45 A;  1Y1W A;  1ZC1 A;  5EPP A;  1TWF A;  3QWZ A;  4AZD A;  4CRZ A;  2NVY A;  3IR7 A;  1PT1 A;  1QCS A;  5DYG A;  3O5A A;  1PPY A;  4AYB A;  2B63 A;  2WAQ A;  4CRY G;  1DMS A;  3GTO A;  1CZ5 A;  1WLF A;  1R7R A;  2V45 A;  1PQH A;  2YU9 A;  1PT0 A;  4KO8 A;  3GTM A;  1PQF A;  2WB1 A;  3GTK A;  1E18 A;  2Y0S A;  4GA5 A;  2R93 A;  4KOD A;  2JIQ A;  4CS0 A;  1AW8 B;  2IV2 X;  1I3Q A;  3IR5 A;  1K83 A;  2EEO B;  2JA5 A;  2PMZ A;  1TWA A;  3IR6 A;  1I50 A;  3QQ8 A;  3QQ7 A;  1Y5I A;  4QIW A;  5GLF A;  1PYU B;  5FTK A;  4KDL A;  5C18 A;  5B6C A;  2JV2 A;  1Y1V A;  4DMR A;  2VUM A;  3DMR A;  1UHE A;  3CQZ A;  4AON B;  1KQG A;  3GTJ A;  1UHD A;  1TMO A;  3FKI A;  2E2I A;  2E2H A;  1E5V A;  2JA7 A;  3HU3 A;  1TWC A;  1G8K A;  1TWH A;  2NVX A;  1KQF A;  4RV0 A;  2JIP A;  2YUJ A;  1YLE A;  3CF2 A;  3HU1 A;  2VPZ A;  1FDO A;  2KI8 A;  3ML1 A;  1R27 A;  5DYI A;  3TIW A;  5FTM A;  5T5I D;  2JIO A;  2NYA A; 
#chains in the Genus database with same CATH topology
 2XDP A;  3LGA A;  4ENG A;  3ZJV A;  4FER A;  4GA6 A;  1AA6 A;  1R9T A;  2KY9 A;  4CQN A;  1OGY A;  3D30 A;  4JJO A;  5D6X A;  5ERG B;  1SMY D;  1SIW A;  1ZYR D;  2DMR A;  3GTP A;  1CZ4 A;  2G5D A;  1VC3 B;  4FG2 A;  2KQA A;  3X2P A;  4AAY A;  3GTL A;  1OA9 A;  1OA7 A;  4KDI A;  4FFT A;  3ZGZ A;  3H0G A;  1Y4Z A;  2PJH B;  1E32 A;  2R7Z A;  1FDI A;  1PQE A;  3OUG A;  1SFO A;  2LW6 A;  3BQB A;  2V3V A;  1Q16 A;  1WCM A;  2PIC A;  1E60 A;  1PYQ A;  4NOH A;  3HKZ A;  3HU2 A;  1EU1 A;  5H4U A;  1BW3 A;  5FTJ A;  1G8J A;  2VPW A;  1I9G A;  3X2I A;  3PLX B;  3ENG A;  1YNN D;  2HCZ X;  1HD5 A;  2BH0 A;  2VPX A;  3SUK A;  2JIR A;  3GTG A;  2NAP A;  1H0H A;  1BW4 A;  1S3S A;  2Q19 X;  2JA6 A;  3X2J A;  4JP7 A;  5T5M D;  1H5N A;  5FTN A;  1TWG A;  2E7Z A;  2VPY A;  4AOK B;  1E61 A;  1QDN A;  4FG4 A;  2A69 D;  3X2N A;  2O5J D;  5C1B A;  2B25 A;  2GFA A;  2PWY A;  2R92 A;  3GTQ A;  4KLN A;  2PNW A;  5EQJ B;  4L48 A;  3X2K A;  1CR5 A;  2JIM A;  3ZJU A;  4D7Z B;  3QC8 A;  1IW7 D;  1DMR A;  5FTL A;  4C2M A;  1ZC1 A;  2C45 A;  3TM7 B;  1Y1W A;  2Q1D X;  5CCX A;  5EPP A;  4JS7 A;  2AE0 X;  3SUM A;  1TWF A;  3QWZ A;  1L8F A;  4AZD A;  4CRZ A;  4AS1 A;  3ZJT A;  3LHD A;  2NVY A;  3IR7 A;  1PT1 A;  1QCS A;  3X2H A;  5CCB A;  5DYG A;  2A6E D;  3O5A A;  5CD1 A;  1PPY A;  4AYB A;  2B63 A;  2WAQ A;  4CRY G;  1DMS A;  3GTO A;  2MM2 A;  2A68 D;  1CZ5 A;  1WLF A;  2PJJ A;  1R7R A;  2V45 A;  2A6H D;  1PQH A;  2YU9 A;  5D6W A;  1PT0 A;  4ZM7 A;  4KO8 A;  3X2L A;  3GTM A;  1PQF A;  2QQS A;  2WB1 A;  3GTK A;  3X2O A;  1E18 A;  1O54 A;  2Y0S A;  4GA5 A;  2R93 A;  4KOD A;  3FPR A;  2JIQ A;  3SUL A;  2CW0 D;  4CS0 A;  1AW8 B;  2IV2 X;  2Q1C X;  4ARI A;  1I3Q A;  2G6G A;  3IR5 A;  2EEO B;  1K83 A;  2JA5 A;  5GLY A;  3FPT A;  3MB5 A;  5D6Y A;  2PMZ A;  1TWA A;  3IR6 A;  1I50 A;  3QQ8 A;  3QQ7 A;  1Y5I A;  3M3G A;  4QIW A;  2ENG A;  1PYU B;  5GLF A;  3X2G A;  5FTK A;  4KDL A;  1WC2 A;  2Q18 X;  5C18 A;  2YVL A;  5B6C A;  2JV2 A;  1Y1V A;  4DMR A;  2Q1A X;  4AVR A;  2VUM A;  3DMR A;  1UHE A;  3CQZ A;  2BE5 D;  3X2M A;  4AON B;  4JP6 A;  3SUJ A;  1UHD A;  1KQG A;  3GTJ A;  1TMO A;  2QQR A;  5GM9 A;  4ARC A;  3FKI A;  2E2I A;  3FPU A;  4JCW A;  2GAE A;  1E5V A;  2E2H A;  2JA7 A;  3HU3 A;  1N10 A;  1TWC A;  1G8K A;  1YNJ D;  1TWH A;  3CZB A;  2NVX A;  1KQF A;  2MM0 A;  2YUJ A;  2JIP A;  4RV0 A;  1YLE A;  3CF2 A;  3HU1 A;  4FIB A;  4AQ7 A;  2VPZ A;  5GLX A;  1FDO A;  2KI8 A;  2GF7 A;  3ML1 A;  2PI8 A;  1R27 A;  5DYI A;  4UC4 A;  3TIW A;  5FTM A;  5T5I D;  2JIO A;  2NYA A; 
#chains in the Genus database with same CATH homology
 2XDP A;  3LGA A;  3ZJV A;  4GA6 A;  1R9T A;  2KY9 A;  4CQN A;  1OGY A;  5D6X A;  5ERG B;  1SMY D;  1SIW A;  1ZYR D;  2DMR A;  3GTP A;  1CZ4 A;  2G5D A;  1VC3 B;  4AAY A;  3GTL A;  4KDI A;  3ZGZ A;  3H0G A;  1Y4Z A;  2PJH B;  1E32 A;  2R7Z A;  1FDI A;  1PQE A;  3OUG A;  1SFO A;  2LW6 A;  3BQB A;  2V3V A;  1Q16 A;  2PIC A;  1WCM A;  1E60 A;  1PYQ A;  4NOH A;  3HKZ A;  3HU2 A;  1EU1 A;  5FTJ A;  1G8J A;  2VPW A;  1I9G A;  3PLX B;  1YNN D;  3GTG A;  2VPX A;  2JIR A;  2NAP A;  1H0H A;  1S3S A;  2Q19 X;  2JA6 A;  5T5M D;  4AOK B;  1H5N A;  5FTN A;  1TWG A;  2E7Z A;  2VPY A;  1AA6 A;  1E61 A;  1QDN A;  2A69 D;  2O5J D;  5C1B A;  2B25 A;  2GFA A;  2PWY A;  2R92 A;  3GTQ A;  4KLN A;  2PNW A;  5EQJ B;  1CR5 A;  2JIM A;  3ZJU A;  4D7Z B;  3QC8 A;  1IW7 D;  1DMR A;  5FTL A;  4C2M A;  1ZC1 A;  2C45 A;  3TM7 B;  1Y1W A;  2Q1D X;  5CCX A;  5EPP A;  2AE0 X;  1TWF A;  3QWZ A;  4AZD A;  4CRZ A;  4AS1 A;  3ZJT A;  3LHD A;  2NVY A;  3IR7 A;  1PT1 A;  1QCS A;  5CCB A;  5DYG A;  2A6E D;  3O5A A;  5CD1 A;  1PPY A;  4AYB A;  2B63 A;  2WAQ A;  4CRY G;  1DMS A;  3GTO A;  2MM2 A;  2A68 D;  1CZ5 A;  1WLF A;  2PJJ A;  1R7R A;  2V45 A;  2A6H D;  1PQH A;  2YU9 A;  5D6W A;  1PT0 A;  4KO8 A;  3GTM A;  1PQF A;  2QQS A;  2WB1 A;  3GTK A;  1E18 A;  1O54 A;  2Y0S A;  4GA5 A;  2R93 A;  4KOD A;  3FPR A;  2JIQ A;  2CW0 D;  4CS0 A;  1AW8 B;  2IV2 X;  2Q1C X;  4ARI A;  1I3Q A;  2G6G A;  3IR5 A;  2EEO B;  1K83 A;  2JA5 A;  3FPT A;  3MB5 A;  5D6Y A;  2PMZ A;  1TWA A;  3IR6 A;  1I50 A;  3QQ8 A;  3QQ7 A;  1Y5I A;  4QIW A;  5GLF A;  1PYU B;  5FTK A;  4KDL A;  2Q18 X;  5C18 A;  2YVL A;  5B6C A;  2JV2 A;  1Y1V A;  4DMR A;  2Q1A X;  2VUM A;  3DMR A;  1UHE A;  3CQZ A;  2BE5 D;  4AON B;  1KQG A;  3GTJ A;  1UHD A;  2QQR A;  1TMO A;  4ARC A;  3FKI A;  2E2I A;  3FPU A;  2GAE A;  1E5V A;  2E2H A;  2JA7 A;  3HU3 A;  1TWC A;  1G8K A;  1YNJ D;  1TWH A;  3CZB A;  2NVX A;  1KQF A;  2MM0 A;  2YUJ A;  2JIP A;  4RV0 A;  1YLE A;  3CF2 A;  3HU1 A;  4FIB A;  4AQ7 A;  2VPZ A;  1FDO A;  2KI8 A;  2GF7 A;  3ML1 A;  2PI8 A;  1R27 A;  5DYI A;  4UC4 A;  3TIW A;  5FTM A;  5T5I D;  2JIO A;  2NYA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...