2MM2 | Genus

Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	5
sequence length	65
structure length	65
Chain Sequence	NCTANILNINEVVIATGCVPAGGNLIIRVGSDHSYLIRATVSCGLSLNPSQSFINGESLASGGRC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 65 atoms

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65 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Plant protein
source organism	Pyrenophora tritici-repentis
publication title	Solution NMR Structures of Pyrenophora tritici-repentis ToxB and Its Inactive Homolog Reveal Potential Determinants of Toxin Activity. pubmed doi rcsb
molecule keywords	Toxb
total genus	5
structure length	65
sequence length	65
ec nomenclature
pdb deposition date	2014-03-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF18224	ToxB_N	ToxB N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.330.100	Alpha Beta	Roll	Vcp-like ATPase; Chain A, domain 2	Vcp-like ATPase; Chain A, domain 2	2mm2A00

2MM0A 2MM2A
chains in the Genus database with same CATH superfamily

2YUJA 4RV0A 1CZ5A 5CD1A 3ZJUA 1QCSA 1E32A 2YVLA 2PJHB 5D6XA 5EPPA 5FTJA 1CR5A 3QWZA 3FPUA 4KDIA 2QQRA 4KODA 3TIWA 1R7RA 4AQ7A 2LW6A 5C18A 3LHDA 4KLNA 5C1BA 3QQ8A 1QDNA 4UC4A 5DYIA 2Q1AX 3FPRA 2MM2A 1I9GA 5DYGA 4ARCA 3ZJVA 5B6CA 3FPTA 2PWYA 5CCBA 4KDLA 5D6YA 4ARIA 5FTLA 3ZGZA 1WLFA 5EQJB 4CQNA 2JV2A 2KY9A 1CZ4A 5FTNA 5CCXA 5FTMA 2GF7A 2Q1CX 3QC8A 4FIBA 3HU1A 4AS1A 2XDPA 4KO8A 1O54A 2GFAA 3QQ7A 3CF2A 3HU3A 5ERGB 5FTKA 2MM0A 2Q19X 2Q18X 3ZJTA 3HU2A 1S3SA 3LGAA 1ZC1A 3BQBA 2B25A 3MB5A 5GLFA 5D6WA 2Q1DX 2QQSA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2MM0 A;  2MM2 A; 
#chains in the Genus database with same CATH topology
 2YUJ A;  4RV0 A;  1CZ5 A;  5CD1 A;  3ZJU A;  1QCS A;  1E32 A;  2YVL A;  2PJH B;  5D6X A;  5EPP A;  5FTJ A;  1CR5 A;  3QWZ A;  3FPU A;  4KDI A;  2QQR A;  4KOD A;  3TIW A;  1R7R A;  4AQ7 A;  2LW6 A;  5C18 A;  3LHD A;  4KLN A;  5C1B A;  3QQ8 A;  1QDN A;  4UC4 A;  5DYI A;  2Q1A X;  3FPR A;  2MM2 A;  1I9G A;  5DYG A;  4ARC A;  3ZJV A;  5B6C A;  3FPT A;  2PWY A;  5CCB A;  4KDL A;  5D6Y A;  4ARI A;  5FTL A;  3ZGZ A;  1WLF A;  5EQJ B;  4CQN A;  2JV2 A;  2KY9 A;  1CZ4 A;  5FTN A;  5CCX A;  5FTM A;  2GF7 A;  2Q1C X;  3QC8 A;  4FIB A;  3HU1 A;  4AS1 A;  2XDP A;  4KO8 A;  1O54 A;  2GFA A;  3QQ7 A;  3CF2 A;  3HU3 A;  5ERG B;  5FTK A;  2MM0 A;  2Q19 X;  2Q18 X;  3ZJT A;  3HU2 A;  1S3S A;  3LGA A;  1ZC1 A;  3BQB A;  2B25 A;  3MB5 A;  5GLF A;  5D6W A;  2Q1D X;  2QQS A; 
#chains in the Genus database with same CATH homology
 2YUJ A;  4RV0 A;  1CZ5 A;  5CD1 A;  3ZJU A;  1QCS A;  1E32 A;  2YVL A;  2PJH B;  5D6X A;  5EPP A;  5FTJ A;  1CR5 A;  3QWZ A;  3FPU A;  4KDI A;  2QQR A;  4KOD A;  3TIW A;  1R7R A;  4AQ7 A;  2LW6 A;  5C18 A;  3LHD A;  4KLN A;  5C1B A;  3QQ8 A;  1QDN A;  4UC4 A;  5DYI A;  2Q1A X;  3FPR A;  2MM2 A;  1I9G A;  5DYG A;  4ARC A;  3ZJV A;  5B6C A;  3FPT A;  2PWY A;  5CCB A;  4KDL A;  5D6Y A;  4ARI A;  5FTL A;  3ZGZ A;  1WLF A;  5EQJ B;  4CQN A;  2JV2 A;  2KY9 A;  1CZ4 A;  5FTN A;  5CCX A;  5FTM A;  2GF7 A;  2Q1C X;  3QC8 A;  4FIB A;  3HU1 A;  4AS1 A;  2XDP A;  4KO8 A;  1O54 A;  2GFA A;  3QQ7 A;  3CF2 A;  3HU3 A;  5ERG B;  5FTK A;  2MM0 A;  2Q19 X;  2Q18 X;  3ZJT A;  3HU2 A;  1S3S A;  3LGA A;  1ZC1 A;  3BQB A;  2B25 A;  3MB5 A;  5GLF A;  5D6W A;  2Q1D X;  2QQS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2MM2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations