2Q8AA

Structure of the malaria antigen ama1 in complex with a growth-inhibitory antibody
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
332
structure length
316
Chain Sequence
GNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCNKDESKRNSMFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPEQHLTDYEKIKEGFKNKNASMIKYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the malaria antigen AMA1 in complex with a growth-inhibitory antibody.
pubmed doi rcsb
molecule tags Immune system
source organism Plasmodium falciparum
molecule keywords Apical membrane antigen 1
total genus 97
structure length 316
sequence length 332
ec nomenclature
pdb deposition date 2007-06-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2q8aA01
3ZLEA 2QJ2A 2YIOA 4Z09A 4A5TS 3HMSA 3SP8A 3HMRA 1GMNA 5CP9A 2Y8RA 2LL4M 5EODA 3SRIA 3HMTA 2F83A 5CT1A 3ZWZA 2J8LA 2Q8AA 5I25A 1W81A 1GMOA 5CS5A 4UV6A 4DURA 3MKPA 1NK1A 1W8KA 2QJ4A 4APMA 4R1BA 5CT3A 2Z8WA 5CS9A 2Q8BA 2K13X 1I8NA 3HN4A 4UAOA 1GP9A 5CSQA 4Z0EA 4R1CA 4APLA 5CT2A 4Z0FA 4R19A 3SRJA 2Z8VA 1Z40A 4IUAA 5CS1A 2YILA 5EOKA 5COEA 4R1AA 2J8JA 1HKYA 1BHTA 2LL3A 5CS3A 2X2ZA 2HGFA 1YXEA 2YIPA 4Z0DA
chains in the Genus database with same CATH superfamily
3ZLEA 2QJ2A 2YIOA 4Z09A 4A5TS 3HMSA 3SP8A 3HMRA 1GMNA 5CP9A 2Y8RA 2LL4M 5EODA 3SRIA 3HMTA 2F83A 5CT1A 3ZWZA 2J8LA 2Q8AA 5I25A 1W81A 1GMOA 5CS5A 4UV6A 4DURA 3MKPA 1NK1A 1W8KA 2QJ4A 4YIZA 4APMA 4R1BA 5CT3A 2Z8WA 5CS9A 2Q8BA 2K13X 1I8NA 2KL5A 3HN4A 4UAOA 4YIVA 1GP9A 5CSQA 4Z0EA 4R1CA 4APLA 5CT2A 4Z0FA 4R19A 3SRJA 2Z8VA 1Z40A 4IUAA 5CS1A 2YILA 5EOKA 5COEA 4R1AA 2J8JA 1HKYA 1BHTA 2LL3A 5CS3A 2X2ZA 2HGFA 1YXEA 2YIPA 4Z0DA
chains in the Genus database with same CATH topology
3ZLEA 2QJ2A 2YIOA 4Z09A 4A5TS 3HMSA 3SP8A 3HMRA 1GMNA 5CP9A 2Y8RA 2LL4M 5EODA 3SRIA 3HMTA 2F83A 5CT1A 3ZWZA 2J8LA 2Q8AA 5I25A 1W81A 1GMOA 5CS5A 4UV6A 4DURA 3MKPA 1NK1A 1W8KA 2QJ4A 4YIZA 4APMA 4R1BA 5CT3A 2Z8WA 5CS9A 2Q8BA 2K13X 1I8NA 2KL5A 3HN4A 4UAOA 4YIVA 1GP9A 5CSQA 4Z0EA 4R1CA 4APLA 5CT2A 4Z0FA 4R19A 3SRJA 2Z8VA 1Z40A 4IUAA 5CS1A 2YILA 5EOKA 5COEA 4R1AA 2J8JA 1HKYA 1BHTA 2LL3A 5CS3A 2X2ZA 2HGFA 1YXEA 2YIPA 4Z0DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZLE A;  2QJ2 A;  2YIO A;  4Z09 A;  4A5T S;  3HMS A;  3SP8 A;  3HMR A;  1GMN A;  5CP9 A;  2Y8R A;  2LL4 M;  5EOD A;  3SRI A;  3HMT A;  2F83 A;  5CT1 A;  3ZWZ A;  2J8L A;  2Q8A A;  5I25 A;  1W81 A;  1GMO A;  5CS5 A;  4UV6 A;  4DUR A;  3MKP A;  1NK1 A;  1W8K A;  2QJ4 A;  4APM A;  4R1B A;  5CT3 A;  2Z8W A;  5CS9 A;  2Q8B A;  2K13 X;  1I8N A;  3HN4 A;  4UAO A;  1GP9 A;  5CSQ A;  4Z0E A;  4R1C A;  4APL A;  5CT2 A;  4Z0F A;  4R19 A;  3SRJ A;  2Z8V A;  1Z40 A;  4IUA A;  5CS1 A;  2YIL A;  5EOK A;  5COE A;  4R1A A;  2J8J A;  1HKY A;  1BHT A;  2LL3 A;  5CS3 A;  2X2Z A;  2HGF A;  1YXE A;  2YIP A;  4Z0D A; 
#chains in the Genus database with same CATH topology
 3ZLE A;  2QJ2 A;  2YIO A;  4Z09 A;  4A5T S;  3HMS A;  3SP8 A;  3HMR A;  1GMN A;  5CP9 A;  2Y8R A;  2LL4 M;  5EOD A;  3SRI A;  3HMT A;  2F83 A;  5CT1 A;  3ZWZ A;  2J8L A;  2Q8A A;  5I25 A;  1W81 A;  1GMO A;  5CS5 A;  4UV6 A;  4DUR A;  3MKP A;  1NK1 A;  1W8K A;  2QJ4 A;  4YIZ A;  4APM A;  4R1B A;  5CT3 A;  2Z8W A;  5CS9 A;  2Q8B A;  2K13 X;  1I8N A;  2KL5 A;  3HN4 A;  4UAO A;  4YIV A;  1GP9 A;  5CSQ A;  4Z0E A;  4R1C A;  4APL A;  5CT2 A;  4Z0F A;  4R19 A;  3SRJ A;  2Z8V A;  1Z40 A;  4IUA A;  5CS1 A;  2YIL A;  5EOK A;  5COE A;  4R1A A;  2J8J A;  1HKY A;  1BHT A;  2LL3 A;  5CS3 A;  2X2Z A;  2HGF A;  1YXE A;  2YIP A;  4Z0D A; 
#chains in the Genus database with same CATH homology
 3ZLE A;  2QJ2 A;  2YIO A;  4Z09 A;  4A5T S;  3HMS A;  3SP8 A;  3HMR A;  1GMN A;  5CP9 A;  2Y8R A;  2LL4 M;  5EOD A;  3SRI A;  3HMT A;  2F83 A;  5CT1 A;  3ZWZ A;  2J8L A;  2Q8A A;  5I25 A;  1W81 A;  1GMO A;  5CS5 A;  4UV6 A;  4DUR A;  3MKP A;  1NK1 A;  1W8K A;  2QJ4 A;  4YIZ A;  4APM A;  4R1B A;  5CT3 A;  2Z8W A;  5CS9 A;  2Q8B A;  2K13 X;  1I8N A;  2KL5 A;  3HN4 A;  4UAO A;  4YIV A;  1GP9 A;  5CSQ A;  4Z0E A;  4R1C A;  4APL A;  5CT2 A;  4Z0F A;  4R19 A;  3SRJ A;  2Z8V A;  1Z40 A;  4IUA A;  5CS1 A;  2YIL A;  5EOK A;  5COE A;  4R1A A;  2J8J A;  1HKY A;  1BHT A;  2LL3 A;  5CS3 A;  2X2Z A;  2HGF A;  1YXE A;  2YIP A;  4Z0D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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