2Q8BA

Structure of the malaria antigen ama1 in complex with a growth-inhibitory antibody
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
334
structure length
292
Chain Sequence
YMGNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCMFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the Malaria Antigen AMA1 in Complex with a Growth-Inhibitory Antibody
pubmed doi rcsb
molecule tags Immune system
source organism Plasmodium falciparum
molecule keywords Apical membrane antigen 1
total genus 84
structure length 292
sequence length 334
ec nomenclature
pdb deposition date 2007-06-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2q8bA01
1W8KA 2YIOA 4R19A 4UAOA 4DURA 3HMRA 2Q8BA 4Z0FA 5CS5A 1NK1A 5CT3A 5EODA 4A5TS 2Y8RA 3ZWZA 1Z40A 1YXEA 4UV6A 4Z09A 3SP8A 4Z0EA 2YIPA 5CS3A 1W81A 2YILA 5I25A 2X2ZA 5CP9A 2QJ2A 1GMOA 4R1AA 2LL3A 5CS9A 4R1BA 2QJ4A 3HMSA 4APMA 1GMNA 2HGFA 1BHTA 1I8NA 2F83A 5CS1A 3SRJA 2K13X 4APLA 3HMTA 5CT2A 3MKPA 2Q8AA 3HN4A 5EOKA 2J8LA 4Z0DA 5COEA 5CSQA 4R1CA 4IUAA 1GP9A 2LL4M 1HKYA 2Z8VA 3SRIA 2J8JA 5CT1A 2Z8WA 3ZLEA
chains in the Genus database with same CATH superfamily
1W8KA 2YIOA 4R19A 4UAOA 4DURA 3HMRA 2Q8BA 4Z0FA 5CS5A 1NK1A 5CT3A 5EODA 4A5TS 2Y8RA 3ZWZA 1Z40A 1YXEA 4UV6A 4Z09A 3SP8A 4Z0EA 2YIPA 5CS3A 4YIVA 1W81A 2YILA 5I25A 2X2ZA 5CP9A 2QJ2A 1GMOA 4R1AA 2KL5A 2LL3A 4R1BA 5CS9A 2QJ4A 3HMSA 4APMA 1GMNA 2HGFA 1BHTA 1I8NA 2F83A 5CS1A 3SRJA 2K13X 4APLA 3HMTA 5CT2A 3MKPA 2Q8AA 4YIZA 3HN4A 5EOKA 2J8LA 4Z0DA 5COEA 5CSQA 4R1CA 4IUAA 1GP9A 2LL4M 1HKYA 2Z8VA 3SRIA 2J8JA 5CT1A 2Z8WA 3ZLEA
chains in the Genus database with same CATH topology
1W8KA 2YIOA 4R19A 4UAOA 4DURA 3HMRA 2Q8BA 4Z0FA 5CS5A 1NK1A 5CT3A 5EODA 4A5TS 2Y8RA 3ZWZA 1Z40A 1YXEA 4UV6A 4Z09A 3SP8A 4Z0EA 2YIPA 5CS3A 4YIVA 1W81A 2YILA 5I25A 2X2ZA 5CP9A 2QJ2A 1GMOA 4R1AA 2KL5A 2LL3A 4R1BA 5CS9A 2QJ4A 3HMSA 4APMA 1GMNA 2HGFA 1BHTA 1I8NA 2F83A 5CS1A 3SRJA 2K13X 4APLA 3HMTA 5CT2A 3MKPA 2Q8AA 4YIZA 3HN4A 5EOKA 2J8LA 4Z0DA 5COEA 5CSQA 4R1CA 4IUAA 1GP9A 2LL4M 1HKYA 2Z8VA 3SRIA 2J8JA 5CT1A 2Z8WA 3ZLEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W8K A;  2YIO A;  4R19 A;  4UAO A;  4DUR A;  3HMR A;  2Q8B A;  4Z0F A;  5CS5 A;  1NK1 A;  5CT3 A;  5EOD A;  4A5T S;  2Y8R A;  3ZWZ A;  1Z40 A;  1YXE A;  4UV6 A;  4Z09 A;  3SP8 A;  4Z0E A;  2YIP A;  5CS3 A;  1W81 A;  2YIL A;  5I25 A;  2X2Z A;  5CP9 A;  2QJ2 A;  1GMO A;  4R1A A;  2LL3 A;  5CS9 A;  4R1B A;  2QJ4 A;  3HMS A;  4APM A;  1GMN A;  2HGF A;  1BHT A;  1I8N A;  2F83 A;  5CS1 A;  3SRJ A;  2K13 X;  4APL A;  3HMT A;  5CT2 A;  3MKP A;  2Q8A A;  3HN4 A;  5EOK A;  2J8L A;  4Z0D A;  5COE A;  5CSQ A;  4R1C A;  4IUA A;  1GP9 A;  2LL4 M;  1HKY A;  2Z8V A;  3SRI A;  2J8J A;  5CT1 A;  2Z8W A;  3ZLE A; 
#chains in the Genus database with same CATH topology
 1W8K A;  2YIO A;  4R19 A;  4UAO A;  4DUR A;  3HMR A;  2Q8B A;  4Z0F A;  5CS5 A;  1NK1 A;  5CT3 A;  5EOD A;  4A5T S;  2Y8R A;  3ZWZ A;  1Z40 A;  1YXE A;  4UV6 A;  4Z09 A;  3SP8 A;  4Z0E A;  2YIP A;  5CS3 A;  4YIV A;  1W81 A;  2YIL A;  5I25 A;  2X2Z A;  5CP9 A;  2QJ2 A;  1GMO A;  4R1A A;  2KL5 A;  2LL3 A;  4R1B A;  5CS9 A;  2QJ4 A;  3HMS A;  4APM A;  1GMN A;  2HGF A;  1BHT A;  1I8N A;  2F83 A;  5CS1 A;  3SRJ A;  2K13 X;  4APL A;  3HMT A;  5CT2 A;  3MKP A;  2Q8A A;  4YIZ A;  3HN4 A;  5EOK A;  2J8L A;  4Z0D A;  5COE A;  5CSQ A;  4R1C A;  4IUA A;  1GP9 A;  2LL4 M;  1HKY A;  2Z8V A;  3SRI A;  2J8J A;  5CT1 A;  2Z8W A;  3ZLE A; 
#chains in the Genus database with same CATH homology
 1W8K A;  2YIO A;  4R19 A;  4UAO A;  4DUR A;  3HMR A;  2Q8B A;  4Z0F A;  5CS5 A;  1NK1 A;  5CT3 A;  5EOD A;  4A5T S;  2Y8R A;  3ZWZ A;  1Z40 A;  1YXE A;  4UV6 A;  4Z09 A;  3SP8 A;  4Z0E A;  2YIP A;  5CS3 A;  4YIV A;  1W81 A;  2YIL A;  5I25 A;  2X2Z A;  5CP9 A;  2QJ2 A;  1GMO A;  4R1A A;  2KL5 A;  2LL3 A;  4R1B A;  5CS9 A;  2QJ4 A;  3HMS A;  4APM A;  1GMN A;  2HGF A;  1BHT A;  1I8N A;  2F83 A;  5CS1 A;  3SRJ A;  2K13 X;  4APL A;  3HMT A;  5CT2 A;  3MKP A;  2Q8A A;  4YIZ A;  3HN4 A;  5EOK A;  2J8L A;  4Z0D A;  5COE A;  5CSQ A;  4R1C A;  4IUA A;  1GP9 A;  2LL4 M;  1HKY A;  2Z8V A;  3SRI A;  2J8J A;  5CT1 A;  2Z8W A;  3ZLE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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