The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
61
|
sequence length |
239
|
structure length |
230
|
Chain Sequence |
ENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASLENTVDLHISNSHPLLTSDQYKAYLQDLVEGMDFQGPGES
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Ser386 phosphorylation of transcription factor IRF-3 induces dimerization and association with CBP/p300 without overall conformational change.
pubmed doi rcsb |
| molecule tags |
Transcription
|
| source organism |
Homo sapiens
|
| molecule keywords |
Interferon regulatory factor 3
|
| total genus |
61
|
| structure length |
230
|
| sequence length |
239
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2009-09-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10401 | IRF-3 | Interferon-regulatory factor 3 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 1U7F B; 1ZOQ A; 3A77 A; 1G88 A; 1U7V A; 1MK2 A; 3DIT A; 1QWT A; 1KHX A; 3DSH A; 1DD1 A; 3GMJ A; 4R9P A; 5JEL A; 5C4V A; 1U7V B; 1KHU A; 1YGS A; 1MJS A; 5JEK A; 5JEM A; 1U7F A; 1J2F A; 1MR1 A; 1DEV A; 5JEO A; 5JER A; 5JEJ A; 5BVI A; #chains in the Genus database with same CATH topology 2LC1 A; 1GXC A; 3UNN A; 1Z0S A; 1Y3I A; 3HUF A; 4JIW D; 3DIT A; 1QWT A; 3GQS A; 4G2S A; 3FM8 A; 1DD1 A; 1R21 A; 2G1L A; 3GMJ A; 4KU0 D; 3V8R A; 1SUW A; 2BON A; 2I29 A; 1Y3H A; 3VA4 A; 3V7U A; 1MJS A; 2I1W A; 2JKD A; 4WER A; 5EJG A; 1QU5 A; 3V7W A; 3V8P A; 3I6U A; 4L02 A; 3MDB A; 2Q5F A; 5JEK A; 1K2N A; 3OUN A; 5DHS A; 5EJH A; 1WLN A; 3V80 A; 3KT9 A; 1MR1 A; 1J4K A; 1J4O A; 4V24 A; 3VA1 A; 3HX1 A; 5EJI A; 4A0E A; 3PO8 A; 3UOT A; 2AFF A; 5JEJ A; 2KB4 A; 5BVI A; 1U7F B; 1ZOQ A; 1G88 A; 1G3G A; 1K3J A; 1DMZ A; 1J4L A; 3AFO A; 5DHT A; 3PFN A; 1G6G A; 5DHR A; 4QCJ A; 1FHR A; 1J4Q A; 2QVL A; 3UV0 A; 1J4P A; 2AN1 A; 4R9P A; 3T5P A; 3POA A; 4H87 A; 4WRR A; 1KHU A; 2JGR A; 2KB3 A; 5DHU A; 5JEM A; 1U7F A; 2I2D A; 2I2A A; 4JIV D; 1J2F A; 3UMZ A; 3ELS A; 2FF4 A; 3V8M A; 2JPE A; 1FHQ A; 3UN0 A; 4JON A; 4EJQ A; 2PIE A; 4EGX A; 3V8Q A; 3VZD A; 1K3Q A; 3UNM A; 5E50 A; 3VZC A; 1MK2 A; 4DY6 A; 5JEL A; 1YJ5 C; 5DHP A; 1U0R A; 1U7V B; 3I0N A; 5C4V A; 1YGS A; 3HUE A; 1LGQ A; 1UHT A; 1Z0Z A; 4D9V A; 2JQL A; 5EJF A; 1WV3 A; 2FEZ A; 3V7Y A; 1YT5 A; 5A8I A; 5JER A; 2JQI A; 2JQJ A; 4HAO A; 3A77 A; 3ELV A; 2XXS A; 1U0T A; 3V8N A; 2KKL A; 1U7V A; 5DHQ A; 4A4Y A; 1UJX A; 1KHX A; 3VZB A; 2A0T A; 2W3O A; 3DSH A; 2CSW A; 1Z0U A; 3I6W A; 1MZK A; 5DJO A; 2XT9 B; 3I0M A; 3S40 A; 1YJM A; 2P1R A; 2EH0 A; 3VPY A; 1K3N A; 2QV7 A; 2I2C A; 1DEV A; 5JEO A; 2I2B A; 2I2F A; 2KFU A; 2BRF A; 1LGP A; 1K2M A; #chains in the Genus database with same CATH homology 2LC1 A; 1GXC A; 3UNN A; 3HUF A; 4JIW D; 3DIT A; 1QWT A; 3GQS A; 4G2S A; 3FM8 A; 1DD1 A; 1R21 A; 2G1L A; 3GMJ A; 4KU0 D; 2BON A; 3VA4 A; 1MJS A; 2JKD A; 4WER A; 1K2N A; 1QU5 A; 5JEK A; 3I6U A; 4L02 A; 3MDB A; 3OUN A; 1WLN A; 3KT9 A; 1MR1 A; 1J4K A; 1J4O A; 4V24 A; 3VA1 A; 3HX1 A; 4A0E A; 3PO8 A; 3UOT A; 2AFF A; 5JEJ A; 2KB4 A; 5BVI A; 1U7F B; 1ZOQ A; 1G88 A; 1G3G A; 1K3J A; 1DMZ A; 1J4L A; 1G6G A; 1FHR A; 4QCJ A; 1J4Q A; 2QVL A; 3UV0 A; 1J4P A; 4R9P A; 3T5P A; 3POA A; 4H87 A; 4WRR A; 1KHU A; 2JGR A; 2KB3 A; 5JEM A; 1U7F A; 4JIV D; 1J2F A; 3UMZ A; 3ELS A; 2FF4 A; 2JPE A; 1FHQ A; 3UN0 A; 4JON A; 4EJQ A; 2PIE A; 4EGX A; 3VZD A; 1K3Q A; 3UNM A; 5E50 A; 3VZC A; 1MK2 A; 5JEL A; 1YJ5 C; 5C4V A; 1U7V B; 3I0N A; 1YGS A; 3HUE A; 1LGQ A; 1UHT A; 4D9V A; 2JQL A; 1WV3 A; 2FEZ A; 5A8I A; 5JER A; 2JQI A; 2JQJ A; 3A77 A; 3ELV A; 2XXS A; 2KKL A; 1U7V A; 4A4Y A; 1UJX A; 1KHX A; 3VZB A; 2A0T A; 2W3O A; 3DSH A; 2CSW A; 3I6W A; 1MZK A; 5DJO A; 2XT9 B; 3I0M A; 3S40 A; 1YJM A; 2P1R A; 2EH0 A; 3VPY A; 1K3N A; 2QV7 A; 1DEV A; 5JEO A; 2KFU A; 2BRF A; 1LGP A; 1K2M A;
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