3FPR | Genus

Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	85
structure length	85
Chain Sequence	GDLGGCPFLVAENKTGYPTIVACKQDCNGTTETAPNGTRCFSIGDEGLRRMTANLPYDCPLGQCSNGDCIPKETYEVCYRRNWRD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system
source organism	Rhipicephalus sanguineus
publication title	Structural basis of chemokine sequestration by a tick chemokine binding protein: the crystal structure of the complex between Evasin-1 and CCL3 pubmed doi rcsb
molecule keywords	Evasin-1
total genus	15
structure length	85
sequence length	85
chains with identical sequence	D
ec nomenclature
pdb deposition date	2009-01-06

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.330.50	Alpha Beta	Roll	Vcp-like ATPase; Chain A, domain 2	Vcp-like ATPase; Chain A, domain 2	3fprA00

3FPRA 3FPUA 3FPTA
chains in the Genus database with same CATH superfamily

2QQSA 5EPPA 3FPRA 2LW6A 3FPTA 3ZJVA 1R7RA 5D6YA 2GF7A 1S3SA 5C18A 2XDPA 1O54A 3HU3A 3FPUA 5FTJA 1QDNA 2JV2A 5FTMA 3ZJTA 3ZGZA 5D6XA 3HU1A 5DYIA 3LGAA 5FTLA 5CCBA 2PJHB 5FTNA 4FIBA 4KDLA 3HU2A 4KO8A 5EQJB 2KY9A 4ARCA 4AQ7A 2YVLA 3MB5A 5GLFA 2MM2A 2Q18X 2Q1DX 3ZJUA 1CZ5A 2MM0A 2Q19X 2QQRA 5DYGA 2Q1CX 4KODA 4AS1A 3QWZA 5CCXA 3QQ8A 5ERGB 2Q1AX 2B25A 5FTKA 3QC8A 5B6CA 5C1BA 4CQNA 3LHDA 2GFAA 4KLNA 2PWYA 1QCSA 3QQ7A 1E32A 1I9GA 3TIWA 2YUJA 1CZ4A 1CR5A 1ZC1A 1WLFA 4UC4A 3BQBA 5D6WA 4ARIA 5CD1A 3CF2A 4RV0A 4KDIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3FPR A;  3FPU A;  3FPT A; 
#chains in the Genus database with same CATH topology
 2QQS A;  5EPP A;  3FPR A;  2LW6 A;  3FPT A;  3ZJV A;  1R7R A;  5D6Y A;  2GF7 A;  1S3S A;  5C18 A;  2XDP A;  1O54 A;  3HU3 A;  3FPU A;  5FTJ A;  1QDN A;  2JV2 A;  5FTM A;  3ZJT A;  3ZGZ A;  5D6X A;  3HU1 A;  5DYI A;  3LGA A;  5FTL A;  5CCB A;  2PJH B;  5FTN A;  4FIB A;  4KDL A;  3HU2 A;  4KO8 A;  5EQJ B;  2KY9 A;  4ARC A;  4AQ7 A;  2YVL A;  3MB5 A;  5GLF A;  2MM2 A;  2Q18 X;  2Q1D X;  3ZJU A;  1CZ5 A;  2MM0 A;  2Q19 X;  2QQR A;  5DYG A;  2Q1C X;  4KOD A;  4AS1 A;  3QWZ A;  5CCX A;  3QQ8 A;  5ERG B;  2Q1A X;  2B25 A;  5FTK A;  3QC8 A;  5B6C A;  5C1B A;  4CQN A;  3LHD A;  2GFA A;  4KLN A;  2PWY A;  1QCS A;  3QQ7 A;  1E32 A;  1I9G A;  3TIW A;  2YUJ A;  1CZ4 A;  1CR5 A;  1ZC1 A;  1WLF A;  4UC4 A;  3BQB A;  5D6W A;  4ARI A;  5CD1 A;  3CF2 A;  4RV0 A;  4KDI A; 
#chains in the Genus database with same CATH homology
 2QQS A;  5EPP A;  3FPR A;  2LW6 A;  3FPT A;  3ZJV A;  1R7R A;  5D6Y A;  2GF7 A;  1S3S A;  5C18 A;  2XDP A;  1O54 A;  3HU3 A;  3FPU A;  5FTJ A;  1QDN A;  2JV2 A;  5FTM A;  3ZJT A;  3ZGZ A;  5D6X A;  3HU1 A;  5DYI A;  3LGA A;  5FTL A;  5CCB A;  2PJH B;  5FTN A;  4FIB A;  4KDL A;  3HU2 A;  4KO8 A;  5EQJ B;  2KY9 A;  4ARC A;  4AQ7 A;  2YVL A;  3MB5 A;  5GLF A;  2MM2 A;  2Q18 X;  2Q1D X;  3ZJU A;  1CZ5 A;  2MM0 A;  2Q19 X;  2QQR A;  5DYG A;  2Q1C X;  4KOD A;  4AS1 A;  3QWZ A;  5CCX A;  3QQ8 A;  5ERG B;  2Q1A X;  2B25 A;  5FTK A;  3QC8 A;  5B6C A;  5C1B A;  4CQN A;  3LHD A;  2GFA A;  4KLN A;  2PWY A;  1QCS A;  3QQ7 A;  1E32 A;  1I9G A;  3TIW A;  2YUJ A;  1CZ4 A;  1CR5 A;  1ZC1 A;  1WLF A;  4UC4 A;  3BQB A;  5D6W A;  4ARI A;  5CD1 A;  3CF2 A;  4RV0 A;  4KDI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3FPRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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