3FPT | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	88
structure length	88
Chain Sequence	DLGGCPFLVAENKTGYPTIVACKQDCNGTTETAPNGTRCFSIGDEGLRRMTANLPYDCPLGQCSNGDCIPKETYEVCYRRNWRDKKNH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfee7651d4146eecc7bf718/pdb.gz): 1058 ms

reading 88 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

88 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

Adding embedded #jmolscript: select ({0:87});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system
source organism	Rhipicephalus sanguineus
publication title	Structural basis of chemokine sequestration by a tick chemokine binding protein: the crystal structure of the complex between Evasin-1 and CCL3 pubmed doi rcsb
molecule keywords	Evasin-1
total genus	16
structure length	88
sequence length	88
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2009-01-06

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.330.50	Alpha Beta	Roll	Vcp-like ATPase; Chain A, domain 2	Vcp-like ATPase; Chain A, domain 2	3fptA00

3FPTA 3FPRA 3FPUA
chains in the Genus database with same CATH superfamily

2YUJA 4RV0A 1CZ5A 5CD1A 3ZJUA 1QCSA 1E32A 2YVLA 2PJHB 5D6XA 5EPPA 5FTJA 1CR5A 3QWZA 3FPUA 4KDIA 2QQRA 4KODA 3TIWA 1R7RA 4AQ7A 2LW6A 5C18A 3LHDA 4KLNA 5C1BA 3QQ8A 1QDNA 4UC4A 5DYIA 2Q1AX 3FPRA 2MM2A 1I9GA 5DYGA 4ARCA 3ZJVA 5B6CA 3FPTA 2PWYA 5CCBA 4KDLA 5D6YA 4ARIA 5FTLA 3ZGZA 1WLFA 5EQJB 4CQNA 2JV2A 2KY9A 1CZ4A 5FTNA 5CCXA 5FTMA 2GF7A 2Q1CX 3QC8A 4FIBA 3HU1A 4AS1A 2XDPA 4KO8A 1O54A 2GFAA 3QQ7A 3CF2A 3HU3A 5ERGB 5FTKA 2MM0A 2Q19X 2Q18X 3ZJTA 3HU2A 1S3SA 3LGAA 1ZC1A 3BQBA 2B25A 3MB5A 5GLFA 5D6WA 2Q1DX 2QQSA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3FPT A;  3FPR A;  3FPU A; 
#chains in the Genus database with same CATH topology
 2YUJ A;  4RV0 A;  1CZ5 A;  5CD1 A;  3ZJU A;  1QCS A;  1E32 A;  2YVL A;  2PJH B;  5D6X A;  5EPP A;  5FTJ A;  1CR5 A;  3QWZ A;  3FPU A;  4KDI A;  2QQR A;  4KOD A;  3TIW A;  1R7R A;  4AQ7 A;  2LW6 A;  5C18 A;  3LHD A;  4KLN A;  5C1B A;  3QQ8 A;  1QDN A;  4UC4 A;  5DYI A;  2Q1A X;  3FPR A;  2MM2 A;  1I9G A;  5DYG A;  4ARC A;  3ZJV A;  5B6C A;  3FPT A;  2PWY A;  5CCB A;  4KDL A;  5D6Y A;  4ARI A;  5FTL A;  3ZGZ A;  1WLF A;  5EQJ B;  4CQN A;  2JV2 A;  2KY9 A;  1CZ4 A;  5FTN A;  5CCX A;  5FTM A;  2GF7 A;  2Q1C X;  3QC8 A;  4FIB A;  3HU1 A;  4AS1 A;  2XDP A;  4KO8 A;  1O54 A;  2GFA A;  3QQ7 A;  3CF2 A;  3HU3 A;  5ERG B;  5FTK A;  2MM0 A;  2Q19 X;  2Q18 X;  3ZJT A;  3HU2 A;  1S3S A;  3LGA A;  1ZC1 A;  3BQB A;  2B25 A;  3MB5 A;  5GLF A;  5D6W A;  2Q1D X;  2QQS A; 
#chains in the Genus database with same CATH homology
 2YUJ A;  4RV0 A;  1CZ5 A;  5CD1 A;  3ZJU A;  1QCS A;  1E32 A;  2YVL A;  2PJH B;  5D6X A;  5EPP A;  5FTJ A;  1CR5 A;  3QWZ A;  3FPU A;  4KDI A;  2QQR A;  4KOD A;  3TIW A;  1R7R A;  4AQ7 A;  2LW6 A;  5C18 A;  3LHD A;  4KLN A;  5C1B A;  3QQ8 A;  1QDN A;  4UC4 A;  5DYI A;  2Q1A X;  3FPR A;  2MM2 A;  1I9G A;  5DYG A;  4ARC A;  3ZJV A;  5B6C A;  3FPT A;  2PWY A;  5CCB A;  4KDL A;  5D6Y A;  4ARI A;  5FTL A;  3ZGZ A;  1WLF A;  5EQJ B;  4CQN A;  2JV2 A;  2KY9 A;  1CZ4 A;  5FTN A;  5CCX A;  5FTM A;  2GF7 A;  2Q1C X;  3QC8 A;  4FIB A;  3HU1 A;  4AS1 A;  2XDP A;  4KO8 A;  1O54 A;  2GFA A;  3QQ7 A;  3CF2 A;  3HU3 A;  5ERG B;  5FTK A;  2MM0 A;  2Q19 X;  2Q18 X;  3ZJT A;  3HU2 A;  1S3S A;  3LGA A;  1ZC1 A;  3BQB A;  2B25 A;  3MB5 A;  5GLF A;  5D6W A;  2Q1D X;  2QQS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3FPTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN