3SRI | Genus

Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	82
sequence length	335
structure length	286
Chain Sequence	NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSKTTFLKPVATGNQDLKDGGFAFPPTEPLISPMTLNGMRDFYKNNEYVKNLDELTLCSRHAGNMNPDKDENSNYKYPAVYDDKDKKCHILYIAAQENNGPMFCFRPAKDKSFQNYVYLSKNVVDNWEKVCPRKNLENAKFGLWVDGNCEDIPHVNEFSANDLFECNKLVFELSASDQPDRYKSHGKGYNWGNYNRKTHKCEIFNVKPTCLINDKSYIATTALSHPIEVENNFP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell invasion
source organism	Plasmodium falciparum
publication title	Structural and functional insights into the malaria parasite moving junction complex. pubmed doi rcsb
molecule keywords	Apical membrane antigen 1
total genus	82
structure length	286
sequence length	335
ec nomenclature
pdb deposition date	2011-07-07

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.50.4.10	Alpha Beta	3-Layer(bba) Sandwich	Hepatocyte Growth Factor	Hepatocyte Growth Factor	3sriA01

1GMOA 1NK1A 2LL3A 2LL4M 2Y8RA 4A5TS 3SP8A 4APLA 3ZWZA 3HMTA 5CT3A 2Q8AA 4IUAA 4Z0DA 3HMSA 5CS9A 1HKYA 1I8NA 3ZLEA 5CSQA 2Z8WA 2HGFA 5CS3A 4Z09A 1W8KA 5I25A 4R1CA 1GMNA 1YXEA 5CT1A 2QJ4A 2K13X 5COEA 5CT2A 5EOKA 3SRIA 4APMA 2J8JA 3MKPA 5CS1A 5CS5A 4Z0EA 2X2ZA 4UV6A 1BHTA 2YILA 4DURA 1W81A 4UAOA 2F83A 5CP9A 2QJ2A 4R19A 1GP9A 2J8LA 2YIPA 3HN4A 3HMRA 4Z0FA 1Z40A 5EODA 2Z8VA 4R1BA 3SRJA 2Q8BA 2YIOA 4R1AA
chains in the Genus database with same CATH superfamily

1GMOA 1NK1A 2LL3A 2LL4M 2Y8RA 4YIVA 4A5TS 3SP8A 4APLA 3ZWZA 3HMTA 2KL5A 5CT3A 2Q8AA 4IUAA 4Z0DA 3HMSA 5CS9A 1HKYA 1I8NA 3ZLEA 5CSQA 2Z8WA 2HGFA 5CS3A 4YIZA 4Z09A 1W8KA 5I25A 4R1CA 1GMNA 1YXEA 5CT1A 2QJ4A 2K13X 5COEA 5CT2A 5EOKA 3SRIA 4APMA 2J8JA 3MKPA 5CS1A 5CS5A 4Z0EA 2X2ZA 4UV6A 1BHTA 2YILA 4DURA 1W81A 4UAOA 2F83A 5CP9A 2QJ2A 4R19A 1GP9A 2J8LA 2YIPA 3HN4A 3HMRA 4Z0FA 1Z40A 5EODA 2Z8VA 4R1BA 3SRJA 2Q8BA 2YIOA 4R1AA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1GMO A;  1NK1 A;  2LL3 A;  2LL4 M;  2Y8R A;  4A5T S;  3SP8 A;  4APL A;  3ZWZ A;  3HMT A;  5CT3 A;  2Q8A A;  4IUA A;  4Z0D A;  3HMS A;  5CS9 A;  1HKY A;  1I8N A;  3ZLE A;  5CSQ A;  2Z8W A;  2HGF A;  5CS3 A;  4Z09 A;  1W8K A;  5I25 A;  4R1C A;  1GMN A;  1YXE A;  5CT1 A;  2QJ4 A;  2K13 X;  5COE A;  5CT2 A;  5EOK A;  3SRI A;  4APM A;  2J8J A;  3MKP A;  5CS1 A;  5CS5 A;  4Z0E A;  2X2Z A;  4UV6 A;  1BHT A;  2YIL A;  4DUR A;  1W81 A;  4UAO A;  2F83 A;  5CP9 A;  2QJ2 A;  4R19 A;  1GP9 A;  2J8L A;  2YIP A;  3HN4 A;  3HMR A;  4Z0F A;  1Z40 A;  5EOD A;  2Z8V A;  4R1B A;  3SRJ A;  2Q8B A;  2YIO A;  4R1A A; 
#chains in the Genus database with same CATH topology
 1GMO A;  1NK1 A;  2LL3 A;  2LL4 M;  2Y8R A;  4YIV A;  4A5T S;  3SP8 A;  4APL A;  3ZWZ A;  3HMT A;  2KL5 A;  5CT3 A;  2Q8A A;  4IUA A;  4Z0D A;  3HMS A;  5CS9 A;  1HKY A;  1I8N A;  3ZLE A;  5CSQ A;  2Z8W A;  2HGF A;  5CS3 A;  4YIZ A;  4Z09 A;  1W8K A;  5I25 A;  4R1C A;  1GMN A;  1YXE A;  5CT1 A;  2QJ4 A;  2K13 X;  5COE A;  5CT2 A;  5EOK A;  3SRI A;  4APM A;  2J8J A;  3MKP A;  5CS1 A;  5CS5 A;  4Z0E A;  2X2Z A;  4UV6 A;  1BHT A;  2YIL A;  4DUR A;  1W81 A;  4UAO A;  2F83 A;  5CP9 A;  2QJ2 A;  4R19 A;  1GP9 A;  2J8L A;  2YIP A;  3HN4 A;  3HMR A;  4Z0F A;  1Z40 A;  5EOD A;  2Z8V A;  4R1B A;  3SRJ A;  2Q8B A;  2YIO A;  4R1A A; 
#chains in the Genus database with same CATH homology
 1GMO A;  1NK1 A;  2LL3 A;  2LL4 M;  2Y8R A;  4YIV A;  4A5T S;  3SP8 A;  4APL A;  3ZWZ A;  3HMT A;  2KL5 A;  5CT3 A;  2Q8A A;  4IUA A;  4Z0D A;  3HMS A;  5CS9 A;  1HKY A;  1I8N A;  3ZLE A;  5CSQ A;  2Z8W A;  2HGF A;  5CS3 A;  4YIZ A;  4Z09 A;  1W8K A;  5I25 A;  4R1C A;  1GMN A;  1YXE A;  5CT1 A;  2QJ4 A;  2K13 X;  5COE A;  5CT2 A;  5EOK A;  3SRI A;  4APM A;  2J8J A;  3MKP A;  5CS1 A;  5CS5 A;  4Z0E A;  2X2Z A;  4UV6 A;  1BHT A;  2YIL A;  4DUR A;  1W81 A;  4UAO A;  2F83 A;  5CP9 A;  2QJ2 A;  4R19 A;  1GP9 A;  2J8L A;  2YIP A;  3HN4 A;  3HMR A;  4Z0F A;  1Z40 A;  5EOD A;  2Z8V A;  4R1B A;  3SRJ A;  2Q8B A;  2YIO A;  4R1A A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3SRIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN