3SRJA

Pfama1 in complex with invasion-inhibitory peptide r1
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
340
structure length
298
Chain Sequence
MGNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSKTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCNSMFCFRPAKDISFQNYVYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINDKSYIATTALSHPIEVENNFPSVP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional insights into the malaria parasite moving junction complex.
pubmed doi rcsb
molecule tags Cell invasion/inhibitor
source organism Plasmodium falciparum
molecule keywords Apical membrane antigen 1, AMA1
total genus 84
structure length 298
sequence length 340
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-07-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 3srjA01
5EOKA 2J8LA 2LL4M 3HMRA 1NK1A 4R1BA 1W81A 3HN4A 1GMOA 1Z40A 5CS5A 3SRJA 5I25A 5CS3A 2Q8AA 2YIOA 1GP9A 5CT1A 3HMSA 3ZWZA 2LL3A 4R1CA 2Y8RA 1W8KA 5CS1A 5CT2A 4DURA 4Z0FA 1I8NA 4R19A 4IUAA 2YILA 3SP8A 2HGFA 5CSQA 4APMA 4A5TS 2F83A 2X2ZA 5CS9A 4Z0EA 4APLA 4UV6A 2YIPA 5COEA 5CP9A 5EODA 4Z0DA 4Z09A 1GMNA 3SRIA 2Z8VA 2Z8WA 2QJ2A 4UAOA 1YXEA 3HMTA 5CT3A 3MKPA 2Q8BA 3ZLEA 4R1AA 2QJ4A 2K13X 1HKYA 2J8JA 1BHTA
chains in the Genus database with same CATH superfamily
5EOKA 2J8LA 2LL4M 3HMRA 1NK1A 4R1BA 1W81A 3HN4A 1GMOA 1Z40A 5CS5A 3SRJA 5I25A 5CS3A 2Q8AA 2YIOA 1GP9A 4YIZA 5CT1A 3HMSA 3ZWZA 2LL3A 4R1CA 2Y8RA 1W8KA 5CS1A 5CT2A 4DURA 4Z0FA 1I8NA 4R19A 4YIVA 4IUAA 2YILA 3SP8A 2HGFA 5CSQA 4APMA 4A5TS 2F83A 2X2ZA 5CS9A 4Z0EA 4APLA 4UV6A 2YIPA 5COEA 5CP9A 5EODA 4Z0DA 4Z09A 1GMNA 3SRIA 2Z8VA 2Z8WA 2QJ2A 4UAOA 1YXEA 3HMTA 5CT3A 3MKPA 2Q8BA 3ZLEA 4R1AA 2KL5A 2K13X 2QJ4A 1HKYA 2J8JA 1BHTA
chains in the Genus database with same CATH topology
5EOKA 2J8LA 2LL4M 3HMRA 1NK1A 4R1BA 1W81A 3HN4A 1GMOA 1Z40A 5CS5A 3SRJA 5I25A 5CS3A 2Q8AA 2YIOA 1GP9A 4YIZA 5CT1A 3HMSA 3ZWZA 2LL3A 4R1CA 2Y8RA 1W8KA 5CS1A 5CT2A 4DURA 4Z0FA 1I8NA 4R19A 4YIVA 4IUAA 2YILA 3SP8A 2HGFA 5CSQA 4APMA 4A5TS 2F83A 2X2ZA 5CS9A 4Z0EA 4APLA 4UV6A 2YIPA 5COEA 5CP9A 5EODA 4Z0DA 4Z09A 1GMNA 3SRIA 2Z8VA 2Z8WA 2QJ2A 4UAOA 1YXEA 3HMTA 5CT3A 3MKPA 2Q8BA 3ZLEA 4R1AA 2KL5A 2K13X 2QJ4A 1HKYA 2J8JA 1BHTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EOK A;  2J8L A;  2LL4 M;  3HMR A;  1NK1 A;  4R1B A;  1W81 A;  3HN4 A;  1GMO A;  1Z40 A;  5CS5 A;  3SRJ A;  5I25 A;  5CS3 A;  2Q8A A;  2YIO A;  1GP9 A;  5CT1 A;  3HMS A;  3ZWZ A;  2LL3 A;  4R1C A;  2Y8R A;  1W8K A;  5CS1 A;  5CT2 A;  4DUR A;  4Z0F A;  1I8N A;  4R19 A;  4IUA A;  2YIL A;  3SP8 A;  2HGF A;  5CSQ A;  4APM A;  4A5T S;  2F83 A;  2X2Z A;  5CS9 A;  4Z0E A;  4APL A;  4UV6 A;  2YIP A;  5COE A;  5CP9 A;  5EOD A;  4Z0D A;  4Z09 A;  1GMN A;  3SRI A;  2Z8V A;  2Z8W A;  2QJ2 A;  4UAO A;  1YXE A;  3HMT A;  5CT3 A;  3MKP A;  2Q8B A;  3ZLE A;  4R1A A;  2QJ4 A;  2K13 X;  1HKY A;  2J8J A;  1BHT A; 
#chains in the Genus database with same CATH topology
 5EOK A;  2J8L A;  2LL4 M;  3HMR A;  1NK1 A;  4R1B A;  1W81 A;  3HN4 A;  1GMO A;  1Z40 A;  5CS5 A;  3SRJ A;  5I25 A;  5CS3 A;  2Q8A A;  2YIO A;  1GP9 A;  4YIZ A;  5CT1 A;  3HMS A;  3ZWZ A;  2LL3 A;  4R1C A;  2Y8R A;  1W8K A;  5CS1 A;  5CT2 A;  4DUR A;  4Z0F A;  1I8N A;  4R19 A;  4YIV A;  4IUA A;  2YIL A;  3SP8 A;  2HGF A;  5CSQ A;  4APM A;  4A5T S;  2F83 A;  2X2Z A;  5CS9 A;  4Z0E A;  4APL A;  4UV6 A;  2YIP A;  5COE A;  5CP9 A;  5EOD A;  4Z0D A;  4Z09 A;  1GMN A;  3SRI A;  2Z8V A;  2Z8W A;  2QJ2 A;  4UAO A;  1YXE A;  3HMT A;  5CT3 A;  3MKP A;  2Q8B A;  3ZLE A;  4R1A A;  2KL5 A;  2K13 X;  2QJ4 A;  1HKY A;  2J8J A;  1BHT A; 
#chains in the Genus database with same CATH homology
 5EOK A;  2J8L A;  2LL4 M;  3HMR A;  1NK1 A;  4R1B A;  1W81 A;  3HN4 A;  1GMO A;  1Z40 A;  5CS5 A;  3SRJ A;  5I25 A;  5CS3 A;  2Q8A A;  2YIO A;  1GP9 A;  4YIZ A;  5CT1 A;  3HMS A;  3ZWZ A;  2LL3 A;  4R1C A;  2Y8R A;  1W8K A;  5CS1 A;  5CT2 A;  4DUR A;  4Z0F A;  1I8N A;  4R19 A;  4YIV A;  4IUA A;  2YIL A;  3SP8 A;  2HGF A;  5CSQ A;  4APM A;  4A5T S;  2F83 A;  2X2Z A;  5CS9 A;  4Z0E A;  4APL A;  4UV6 A;  2YIP A;  5COE A;  5CP9 A;  5EOD A;  4Z0D A;  4Z09 A;  1GMN A;  3SRI A;  2Z8V A;  2Z8W A;  2QJ2 A;  4UAO A;  1YXE A;  3HMT A;  5CT3 A;  3MKP A;  2Q8B A;  3ZLE A;  4R1A A;  2KL5 A;  2K13 X;  2QJ4 A;  1HKY A;  2J8J A;  1BHT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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