3SRJA

Pfama1 in complex with invasion-inhibitory peptide r1
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
340
structure length
298
Chain Sequence
MGNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSKTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCNSMFCFRPAKDISFQNYVYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINDKSYIATTALSHPIEVENNFPSVP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional insights into the malaria parasite moving junction complex.
pubmed doi rcsb
molecule tags Cell invasion/inhibitor
source organism Plasmodium falciparum
molecule keywords Apical membrane antigen 1, AMA1
total genus 84
structure length 298
sequence length 340
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-07-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 3srjA01
3ZWZA 4Z09A 1YXEA 2QJ2A 5CS5A 4R19A 2J8JA 3SRJA 4APMA 3SRIA 3HN4A 4APLA 2X2ZA 3HMSA 4R1BA 4Z0DA 5CT1A 2Q8AA 2HGFA 5CS1A 2J8LA 1HKYA 2Q8BA 5CS9A 1Z40A 3ZLEA 1GP9A 4R1CA 2LL3A 2K13X 1W8KA 4IUAA 2F83A 3HMRA 1NK1A 5CS3A 2Z8WA 4UAOA 4A5TS 4DURA 1GMOA 5CSQA 1I8NA 1BHTA 5CT3A 2YIPA 3HMTA 2LL4M 5I25A 3MKPA 2Y8RA 1W81A 2Z8VA 1GMNA 2YIOA 4UV6A 4Z0FA 5CP9A 5COEA 2QJ4A 4R1AA 5EOKA 3SP8A 2YILA 5EODA 4Z0EA 5CT2A
chains in the Genus database with same CATH superfamily
3ZWZA 4Z09A 1YXEA 2QJ2A 5CS5A 4R19A 2J8JA 3SRJA 4APMA 3SRIA 3HN4A 4APLA 4YIVA 2X2ZA 3HMSA 4R1BA 4Z0DA 5CT1A 2Q8AA 2HGFA 5CS1A 2J8LA 1HKYA 2Q8BA 5CS9A 1Z40A 3ZLEA 1GP9A 4R1CA 2LL3A 2K13X 1W8KA 4IUAA 2F83A 3HMRA 1NK1A 5CS3A 2Z8WA 4UAOA 4A5TS 4DURA 1GMOA 5CSQA 1I8NA 1BHTA 5CT3A 2YIPA 3HMTA 2LL4M 5I25A 3MKPA 2KL5A 2Y8RA 1W81A 2Z8VA 1GMNA 2YIOA 4UV6A 4YIZA 4Z0FA 5CP9A 5COEA 2QJ4A 4R1AA 5EOKA 3SP8A 2YILA 5EODA 4Z0EA 5CT2A
chains in the Genus database with same CATH topology
3ZWZA 4Z09A 1YXEA 2QJ2A 5CS5A 4R19A 2J8JA 3SRJA 4APMA 3SRIA 3HN4A 4APLA 4YIVA 2X2ZA 3HMSA 4R1BA 4Z0DA 5CT1A 2Q8AA 2HGFA 5CS1A 2J8LA 1HKYA 2Q8BA 5CS9A 1Z40A 3ZLEA 1GP9A 4R1CA 2LL3A 2K13X 1W8KA 4IUAA 2F83A 3HMRA 1NK1A 5CS3A 2Z8WA 4UAOA 4A5TS 4DURA 1GMOA 5CSQA 1I8NA 1BHTA 5CT3A 2YIPA 3HMTA 2LL4M 5I25A 3MKPA 2KL5A 2Y8RA 1W81A 2Z8VA 1GMNA 2YIOA 4UV6A 4YIZA 4Z0FA 5CP9A 5COEA 2QJ4A 4R1AA 5EOKA 3SP8A 2YILA 5EODA 4Z0EA 5CT2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZWZ A;  4Z09 A;  1YXE A;  2QJ2 A;  5CS5 A;  4R19 A;  2J8J A;  3SRJ A;  4APM A;  3SRI A;  3HN4 A;  4APL A;  2X2Z A;  3HMS A;  4R1B A;  4Z0D A;  5CT1 A;  2Q8A A;  2HGF A;  5CS1 A;  2J8L A;  1HKY A;  2Q8B A;  5CS9 A;  1Z40 A;  3ZLE A;  1GP9 A;  4R1C A;  2LL3 A;  2K13 X;  1W8K A;  4IUA A;  2F83 A;  3HMR A;  1NK1 A;  5CS3 A;  2Z8W A;  4UAO A;  4A5T S;  4DUR A;  1GMO A;  5CSQ A;  1I8N A;  1BHT A;  5CT3 A;  2YIP A;  3HMT A;  2LL4 M;  5I25 A;  3MKP A;  2Y8R A;  1W81 A;  2Z8V A;  1GMN A;  2YIO A;  4UV6 A;  4Z0F A;  5CP9 A;  5COE A;  2QJ4 A;  4R1A A;  5EOK A;  3SP8 A;  2YIL A;  5EOD A;  4Z0E A;  5CT2 A; 
#chains in the Genus database with same CATH topology
 3ZWZ A;  4Z09 A;  1YXE A;  2QJ2 A;  5CS5 A;  4R19 A;  2J8J A;  3SRJ A;  4APM A;  3SRI A;  3HN4 A;  4APL A;  4YIV A;  2X2Z A;  3HMS A;  4R1B A;  4Z0D A;  5CT1 A;  2Q8A A;  2HGF A;  5CS1 A;  2J8L A;  1HKY A;  2Q8B A;  5CS9 A;  1Z40 A;  3ZLE A;  1GP9 A;  4R1C A;  2LL3 A;  2K13 X;  1W8K A;  4IUA A;  2F83 A;  3HMR A;  1NK1 A;  5CS3 A;  2Z8W A;  4UAO A;  4A5T S;  4DUR A;  1GMO A;  5CSQ A;  1I8N A;  1BHT A;  5CT3 A;  2YIP A;  3HMT A;  2LL4 M;  5I25 A;  3MKP A;  2KL5 A;  2Y8R A;  1W81 A;  2Z8V A;  1GMN A;  2YIO A;  4UV6 A;  4YIZ A;  4Z0F A;  5CP9 A;  5COE A;  2QJ4 A;  4R1A A;  5EOK A;  3SP8 A;  2YIL A;  5EOD A;  4Z0E A;  5CT2 A; 
#chains in the Genus database with same CATH homology
 3ZWZ A;  4Z09 A;  1YXE A;  2QJ2 A;  5CS5 A;  4R19 A;  2J8J A;  3SRJ A;  4APM A;  3SRI A;  3HN4 A;  4APL A;  4YIV A;  2X2Z A;  3HMS A;  4R1B A;  4Z0D A;  5CT1 A;  2Q8A A;  2HGF A;  5CS1 A;  2J8L A;  1HKY A;  2Q8B A;  5CS9 A;  1Z40 A;  3ZLE A;  1GP9 A;  4R1C A;  2LL3 A;  2K13 X;  1W8K A;  4IUA A;  2F83 A;  3HMR A;  1NK1 A;  5CS3 A;  2Z8W A;  4UAO A;  4A5T S;  4DUR A;  1GMO A;  5CSQ A;  1I8N A;  1BHT A;  5CT3 A;  2YIP A;  3HMT A;  2LL4 M;  5I25 A;  3MKP A;  2KL5 A;  2Y8R A;  1W81 A;  2Z8V A;  1GMN A;  2YIO A;  4UV6 A;  4YIZ A;  4Z0F A;  5CP9 A;  5COE A;  2QJ4 A;  4R1A A;  5EOK A;  3SP8 A;  2YIL A;  5EOD A;  4Z0E A;  5CT2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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