3ZWZ | Genus

Total Genus 86

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	86
sequence length	334
structure length	297
Chain Sequence	NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCNKDESKRNSMFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVEAAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 297 atoms

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297 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system
source organism	Plasmodium falciparum
publication title	Structural and Functional Insight Into the Malaria Parasite Moving Junction Complex pubmed doi rcsb
molecule keywords	APICAL MEMBRANE ANTIGEN 1, AMA1
total genus	86
structure length	297
sequence length	334
ec nomenclature
pdb deposition date	2011-08-03

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.50.4.10	Alpha Beta	3-Layer(bba) Sandwich	Hepatocyte Growth Factor	Hepatocyte Growth Factor	3zwzA01

2HGFA 2Z8VA 3HMRA 5CT2A 3MKPA 4A5TS 5I25A 5COEA 4Z0EA 1NK1A 3ZWZA 4Z09A 1HKYA 2YIPA 5CS3A 1W81A 4R1AA 4UAOA 2K13X 4Z0DA 5EOKA 4UV6A 4DURA 2F83A 4R1CA 4APMA 1W8KA 5EODA 1GMOA 2LL3A 4R1BA 4Z0FA 5CS9A 2QJ2A 4APLA 3ZLEA 1Z40A 3HMTA 5CS1A 2Z8WA 1YXEA 1I8NA 4IUAA 5CSQA 2Q8AA 2YILA 3HN4A 2YIOA 2LL4M 3SP8A 5CT1A 2Y8RA 2J8LA 1BHTA 2X2ZA 5CS5A 3SRJA 5CT3A 5CP9A 2J8JA 2QJ4A 1GP9A 2Q8BA 3SRIA 1GMNA 3HMSA 4R19A
chains in the Genus database with same CATH superfamily

2HGFA 2Z8VA 3HMRA 5CT2A 3MKPA 4A5TS 5I25A 5COEA 4Z0EA 1NK1A 4YIZA 4Z09A 3ZWZA 1HKYA 2YIPA 5CS3A 1W81A 4R1AA 4UAOA 2K13X 4Z0DA 5EOKA 4UV6A 4DURA 2F83A 4R1CA 4APMA 1W8KA 5EODA 1GMOA 4YIVA 2LL3A 4R1BA 4Z0FA 5CS9A 2QJ2A 4APLA 3ZLEA 1Z40A 3HMTA 5CS1A 2Z8WA 1YXEA 1I8NA 4IUAA 5CSQA 2Q8AA 2YILA 3HN4A 2YIOA 2LL4M 3SP8A 5CT1A 2Y8RA 2J8LA 1BHTA 2KL5A 2X2ZA 5CS5A 3SRJA 5CT3A 5CP9A 2J8JA 2QJ4A 1GP9A 2Q8BA 3SRIA 1GMNA 3HMSA 4R19A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2HGF A;  2Z8V A;  3HMR A;  5CT2 A;  3MKP A;  4A5T S;  5I25 A;  5COE A;  4Z0E A;  1NK1 A;  3ZWZ A;  4Z09 A;  1HKY A;  2YIP A;  5CS3 A;  1W81 A;  4R1A A;  4UAO A;  2K13 X;  4Z0D A;  5EOK A;  4UV6 A;  4DUR A;  2F83 A;  4R1C A;  4APM A;  1W8K A;  5EOD A;  1GMO A;  2LL3 A;  4R1B A;  4Z0F A;  5CS9 A;  2QJ2 A;  4APL A;  3ZLE A;  1Z40 A;  3HMT A;  5CS1 A;  2Z8W A;  1YXE A;  1I8N A;  4IUA A;  5CSQ A;  2Q8A A;  2YIL A;  3HN4 A;  2YIO A;  2LL4 M;  3SP8 A;  5CT1 A;  2Y8R A;  2J8L A;  1BHT A;  2X2Z A;  5CS5 A;  3SRJ A;  5CT3 A;  5CP9 A;  2J8J A;  2QJ4 A;  1GP9 A;  2Q8B A;  3SRI A;  1GMN A;  3HMS A;  4R19 A; 
#chains in the Genus database with same CATH topology
 2HGF A;  2Z8V A;  3HMR A;  5CT2 A;  3MKP A;  4A5T S;  5I25 A;  5COE A;  4Z0E A;  1NK1 A;  4YIZ A;  4Z09 A;  3ZWZ A;  1HKY A;  2YIP A;  5CS3 A;  1W81 A;  4R1A A;  4UAO A;  2K13 X;  4Z0D A;  5EOK A;  4UV6 A;  4DUR A;  2F83 A;  4R1C A;  4APM A;  1W8K A;  5EOD A;  1GMO A;  4YIV A;  2LL3 A;  4R1B A;  4Z0F A;  5CS9 A;  2QJ2 A;  4APL A;  3ZLE A;  1Z40 A;  3HMT A;  5CS1 A;  2Z8W A;  1YXE A;  1I8N A;  4IUA A;  5CSQ A;  2Q8A A;  2YIL A;  3HN4 A;  2YIO A;  2LL4 M;  3SP8 A;  5CT1 A;  2Y8R A;  2J8L A;  1BHT A;  2KL5 A;  2X2Z A;  5CS5 A;  3SRJ A;  5CT3 A;  5CP9 A;  2J8J A;  2QJ4 A;  1GP9 A;  2Q8B A;  3SRI A;  1GMN A;  3HMS A;  4R19 A; 
#chains in the Genus database with same CATH homology
 2HGF A;  2Z8V A;  3HMR A;  5CT2 A;  3MKP A;  4A5T S;  5I25 A;  5COE A;  4Z0E A;  1NK1 A;  4YIZ A;  4Z09 A;  3ZWZ A;  1HKY A;  2YIP A;  5CS3 A;  1W81 A;  4R1A A;  4UAO A;  2K13 X;  4Z0D A;  5EOK A;  4UV6 A;  4DUR A;  2F83 A;  4R1C A;  4APM A;  1W8K A;  5EOD A;  1GMO A;  4YIV A;  2LL3 A;  4R1B A;  4Z0F A;  5CS9 A;  2QJ2 A;  4APL A;  3ZLE A;  1Z40 A;  3HMT A;  5CS1 A;  2Z8W A;  1YXE A;  1I8N A;  4IUA A;  5CSQ A;  2Q8A A;  2YIL A;  3HN4 A;  2YIO A;  2LL4 M;  3SP8 A;  5CT1 A;  2Y8R A;  2J8L A;  1BHT A;  2KL5 A;  2X2Z A;  5CS5 A;  3SRJ A;  5CT3 A;  5CP9 A;  2J8J A;  2QJ4 A;  1GP9 A;  2Q8B A;  3SRI A;  1GMN A;  3HMS A;  4R19 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3ZWZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN